RNA–Protein interactions for RNA: ENST00000251722.10

USP40-201, Transcript of ubiquitin specific peptidase 40, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene USP40, Length 5,692 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-201ENST00000251722 A0A1B0GUL6 1792 aa11.8□□□□□ -0.52
USP40-201ENST00000251722 M0R143 59 aa11.8□□□□□ -0.52
USP40-201ENST00000251722 SPI1P17947 270 aa11.8□□□□□ -0.52
USP40-201ENST00000251722 DLSTP36957 453 aa11.8□□□□□ -0.52
USP40-201ENST00000251722 BCL6P41182 706 aa11.8□□□□□ -0.52
USP40-201ENST00000251722 GZMKP49863 264 aa11.8□□□□□ -0.52
USP40-201ENST00000251722 BTG1P62324 171 aa11.8□□□□□ -0.52
USP40-201ENST00000251722 ADARB1P78563 741 aaKnown RBP11.8□□□□□ -0.52
USP40-201ENST00000251722 MSMO1Q15800 293 aa11.8□□□□□ -0.52
USP40-201ENST00000251722 VAMP3Q15836 100 aa11.8□□□□□ -0.52
USP40-201ENST00000251722 ZNF680Q8NEM1 530 aa11.8□□□□□ -0.52
USP40-201ENST00000251722 FAM71F1Q96KD3 344 aaPredicted RBP11.8□□□□□ -0.52
USP40-201ENST00000251722 TXN2Q99757 166 aa11.8□□□□□ -0.52
USP40-201ENST00000251722 TTTY10Q9BZA0 68 aa11.8□□□□□ -0.52
USP40-201ENST00000251722 APMAPQ9HDC9 416 aa11.8□□□□□ -0.52
USP40-201ENST00000251722 NDRG4Q9ULP0 352 aaKnown RBP11.8□□□□□ -0.52
USP40-201ENST00000251722 SMAD9O15198 467 aaKnown RBP11.8□□□□□ -0.52
USP40-201ENST00000251722 SFTPBP07988 381 aa11.8□□□□□ -0.52
USP40-201ENST00000251722 ARSBP15848 533 aa11.8□□□□□ -0.52
USP40-201ENST00000251722 SGSHP51688 502 aa11.8□□□□□ -0.52
USP40-201ENST00000251722 MAP2K6P52564 334 aa11.8□□□□□ -0.52
USP40-201ENST00000251722 FOXA1P55317 472 aa11.8□□□□□ -0.52
USP40-201ENST00000251722 TBC1D28Q2M2D7 210 aa11.8□□□□□ -0.52
USP40-201ENST00000251722 H3F3CQ6NXT2 135 aa11.8□□□□□ -0.52
USP40-201ENST00000251722 DTD1Q8TEA8 209 aa11.8□□□□□ -0.52
USP40-201ENST00000251722 FBXW5Q969U6 566 aa11.8□□□□□ -0.52
USP40-201ENST00000251722 TM4SF18Q96CE8 201 aa11.8□□□□□ -0.52
USP40-201ENST00000251722 TAAR9Q96RI9 348 aa11.8□□□□□ -0.52
USP40-201ENST00000251722 EDEM2Q9BV94 578 aa11.8□□□□□ -0.52
USP40-201ENST00000251722 SEC14L2O76054 403 aa11.79□□□□□ -0.52
USP40-201ENST00000251722 HOXC4P09017 264 aaPredicted RBP11.79□□□□□ -0.52
USP40-201ENST00000251722 RD3LP0DJH9 198 aa11.79□□□□□ -0.52
USP40-201ENST00000251722 GRPRP30550 384 aa11.79□□□□□ -0.52
USP40-201ENST00000251722 OR1D5P58170 312 aa11.79□□□□□ -0.52
USP40-201ENST00000251722 MBTPS1Q14703 1052 aa11.79□□□□□ -0.52
USP40-201ENST00000251722 TMEM71Q6P5X7 295 aa11.79□□□□□ -0.52
USP40-201ENST00000251722 PLPP5Q8NEB5 264 aa11.79□□□□□ -0.52
USP40-201ENST00000251722 TIMD4Q96H15 378 aa11.79□□□□□ -0.52
USP40-201ENST00000251722 SORBS1Q9BX66 1292 aaKnown RBP11.79□□□□□ -0.52
USP40-201ENST00000251722 CSNK1G3Q9Y6M4 447 aa11.79□□□□□ -0.52
USP40-201ENST00000251722 THBS1P07996 1170 aa11.79□□□□□ -0.52
USP40-201ENST00000251722 CHRM4P08173 479 aa11.79□□□□□ -0.52
USP40-201ENST00000251722 S100A11P31949 105 aa11.79□□□□□ -0.52
USP40-201ENST00000251722 HTR5AP47898 357 aa11.79□□□□□ -0.52
USP40-201ENST00000251722 TAS2R46P59540 309 aa11.79□□□□□ -0.52
USP40-201ENST00000251722 CD276Q5ZPR3 534 aa11.79□□□□□ -0.52
USP40-201ENST00000251722 SBSNQ6UWP8 590 aa11.79□□□□□ -0.52
USP40-201ENST00000251722 ZC3HAV1Q7Z2W4 902 aaKnown RBP11.79□□□□□ -0.52
USP40-201ENST00000251722 CNIH4Q9P003 139 aa11.79□□□□□ -0.52
USP40-201ENST00000251722 ZNF629Q9UEG4 869 aaPredicted RBP11.79□□□□□ -0.52
USP40-201ENST00000251722 LOXHD1Q8IVV2 1947 aa11.79□□□□□ -0.52
USP40-201ENST00000251722 OR6C6A6NF89 314 aa11.79□□□□□ -0.52
USP40-201ENST00000251722 CD1CP29017 333 aa11.79□□□□□ -0.52
USP40-201ENST00000251722 TACR3P29371 465 aa11.79□□□□□ -0.52
USP40-201ENST00000251722 TNFSF8P32971 234 aa11.79□□□□□ -0.52
USP40-201ENST00000251722 CATR1Q13166 79 aa11.79□□□□□ -0.52
USP40-201ENST00000251722 TRNP1Q6NT89 227 aa11.79□□□□□ -0.52
USP40-201ENST00000251722 PODNL1Q6PEZ8 512 aa11.79□□□□□ -0.52
USP40-201ENST00000251722 SHISA6Q6ZSJ9 500 aa11.79□□□□□ -0.52
USP40-201ENST00000251722 OR4N2Q8NGD1 307 aa11.79□□□□□ -0.52
USP40-201ENST00000251722 BAHD1Q8TBE0 780 aaPredicted RBP11.79□□□□□ -0.52
USP40-201ENST00000251722 SLC25A44Q96H78 314 aaPredicted RBP11.79□□□□□ -0.52
USP40-201ENST00000251722 MAN2C1Q9NTJ4 1040 aa11.79□□□□□ -0.52
USP40-201ENST00000251722 P2RX6O15547 441 aa11.79□□□□□ -0.52
USP40-201ENST00000251722 GPR137BO60478 399 aa11.79□□□□□ -0.52
USP40-201ENST00000251722 RGS11O94810 467 aa11.79□□□□□ -0.52
USP40-201ENST00000251722 CRYABP02511 175 aaKnown RBP11.79□□□□□ -0.52
USP40-201ENST00000251722 GLAP06280 429 aa11.79□□□□□ -0.52
USP40-201ENST00000251722 SERPINE2P07093 398 aa11.79□□□□□ -0.52
USP40-201ENST00000251722 GIPRP48546 466 aa11.79□□□□□ -0.52
USP40-201ENST00000251722 NKPD1Q17RQ9 610 aa11.79□□□□□ -0.52
USP40-201ENST00000251722 ZNF695Q8IW36 515 aa11.79□□□□□ -0.52
USP40-201ENST00000251722 KCTD12Q96CX2 325 aaKnown RBP11.79□□□□□ -0.52
USP40-201ENST00000251722 RASD1Q9Y272 281 aa11.79□□□□□ -0.52
USP40-201ENST00000251722 LOXL2Q9Y4K0 774 aa11.79□□□□□ -0.52
USP40-201ENST00000251722 TCRBV3S1A0A5B6 114 aa11.78□□□□□ -0.52
USP40-201ENST00000251722 POM121BA6NF01 834 aa11.78□□□□□ -0.52
USP40-201ENST00000251722 FANCGO15287 622 aa11.78□□□□□ -0.52
USP40-201ENST00000251722 OR2T7P0C7T2 308 aa11.78□□□□□ -0.52
USP40-201ENST00000251722 CD34P28906 385 aa11.78□□□□□ -0.52
USP40-201ENST00000251722 PBX2P40425 430 aa11.78□□□□□ -0.52
USP40-201ENST00000251722 P2RX1P51575 399 aa11.78□□□□□ -0.52
USP40-201ENST00000251722 OR2T27Q8NH04 317 aa11.78□□□□□ -0.52
USP40-201ENST00000251722 ZMYND19Q96E35 227 aaPredicted RBP11.78□□□□□ -0.52
USP40-201ENST00000251722 SGCZQ96LD1 299 aa11.78□□□□□ -0.52
USP40-201ENST00000251722 NUDT9Q9BW91 350 aa11.78□□□□□ -0.52
USP40-201ENST00000251722 SAMD10Q9BYL1 202 aa11.78□□□□□ -0.52
USP40-201ENST00000251722 IL20RAQ9UHF4 553 aa11.78□□□□□ -0.52
USP40-201ENST00000251722 TMEM269A0A1B0GVZ9 245 aa11.78□□□□□ -0.52
USP40-201ENST00000251722 C2CD4DB7Z1M9 353 aa11.78□□□□□ -0.52
USP40-201ENST00000251722 LRRC37A5PQ49AS3 106 aa11.78□□□□□ -0.52
USP40-201ENST00000251722 GTDC1Q4AE62 458 aa11.78□□□□□ -0.52
USP40-201ENST00000251722 FAM71E1Q6IPT2 247 aa11.78□□□□□ -0.52
USP40-201ENST00000251722 LPCAT3Q6P1A2 487 aa11.78□□□□□ -0.52
USP40-201ENST00000251722 SDR9C7Q8NEX9 313 aa11.78□□□□□ -0.52
USP40-201ENST00000251722 R3HDMLQ9H3Y0 253 aa11.78□□□□□ -0.52
USP40-201ENST00000251722 OLAHQ9NV23 265 aa11.78□□□□□ -0.52
USP40-201ENST00000251722 RLIMQ9NVW2 624 aa11.78□□□□□ -0.52
USP40-201ENST00000251722 EMCNQ9ULC0 261 aa11.78□□□□□ -0.52
USP40-201ENST00000251722 GOSR2O14653 212 aa11.78□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 25.2 ms