RNA–Protein interactions for RNA: ENST00000003302.8

USP28-201, Transcript of ubiquitin specific peptidase 28, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP28, Length 4,669 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-201ENST00000003302 AIPO00170 330 aa9.7□□□□□ -0.86
USP28-201ENST00000003302 OR2T7P0C7T2 308 aa9.7□□□□□ -0.86
USP28-201ENST00000003302 PTBP1P26599 531 aaKnown RBP eCLIP9.7□□□□□ -0.86
USP28-201ENST00000003302 SLC6A6P31641 620 aa9.7□□□□□ -0.86
USP28-201ENST00000003302 MED25Q71SY5 747 aa9.7□□□□□ -0.86
USP28-201ENST00000003302 OR4C16Q8NGL9 310 aa9.7□□□□□ -0.86
USP28-201ENST00000003302 OR2T27Q8NH04 317 aa9.7□□□□□ -0.86
USP28-201ENST00000003302 COQ8AQ8NI60 647 aa9.7□□□□□ -0.86
USP28-201ENST00000003302 ZDHHC1Q8WTX9 485 aa9.7□□□□□ -0.86
USP28-201ENST00000003302 TSPAN32Q96QS1 320 aa9.7□□□□□ -0.86
USP28-201ENST00000003302 NXF5Q9H1B4 397 aaKnown RBP9.7□□□□□ -0.86
USP28-201ENST00000003302 EXOSC3Q9NQT5 275 aaKnown RBP9.7□□□□□ -0.86
USP28-201ENST00000003302 FBXL3Q9UKT7 428 aa9.7□□□□□ -0.86
USP28-201ENST00000003302 KIR3DL2P43630 455 aa9.7□□□□□ -0.86
USP28-201ENST00000003302 GPR3P46089 330 aa9.7□□□□□ -0.86
USP28-201ENST00000003302 OR1D4P47884 311 aa9.7□□□□□ -0.86
USP28-201ENST00000003302 CTXN1P60606 82 aa9.7□□□□□ -0.86
USP28-201ENST00000003302 MFGE8Q08431 387 aaPredicted RBP9.7□□□□□ -0.86
USP28-201ENST00000003302 ITPRIPL2Q3MIP1 535 aa9.7□□□□□ -0.86
USP28-201ENST00000003302 LSMEM1Q8N8F7 131 aa9.7□□□□□ -0.86
USP28-201ENST00000003302 EXD3Q8N9H8 876 aa9.7□□□□□ -0.86
USP28-201ENST00000003302 LRRC20Q8TCA0 184 aa9.7□□□□□ -0.86
USP28-201ENST00000003302 NXPE2Q96DL1 559 aa9.7□□□□□ -0.86
USP28-201ENST00000003302 WDR92Q96MX6 357 aa9.7□□□□□ -0.86
USP28-201ENST00000003302 A0A1W2PPL8 197 aa9.69□□□□□ -0.86
USP28-201ENST00000003302 ALOX12BO75342 701 aa9.69□□□□□ -0.86
USP28-201ENST00000003302 GBX2P52951 348 aaPredicted RBP9.69□□□□□ -0.86
USP28-201ENST00000003302 RPL18Q07020 188 aaKnown RBP9.69□□□□□ -0.86
USP28-201ENST00000003302 BTN1A1Q13410 526 aa9.69□□□□□ -0.86
USP28-201ENST00000003302 BICRALQ6AI39 1079 aa9.69□□□□□ -0.86
USP28-201ENST00000003302 MUC20Q8N307 709 aaPredicted RBP9.69□□□□□ -0.86
USP28-201ENST00000003302 TAAR8Q969N4 342 aa9.69□□□□□ -0.86
USP28-201ENST00000003302 CGGBP1Q9UFW8 167 aaPredicted RBP9.69□□□□□ -0.86
USP28-201ENST00000003302 IKZF2Q9UKS7 526 aa9.69□□□□□ -0.86
USP28-201ENST00000003302 SLC5A6Q9Y289 635 aa9.69□□□□□ -0.86
USP28-201ENST00000003302 NPTNQ9Y639 398 aa9.69□□□□□ -0.86
USP28-201ENST00000003302 TRIOBPQ9H2D6 2365 aa9.69□□□□□ -0.86
USP28-201ENST00000003302 SHISA7A6NL88 538 aa9.69□□□□□ -0.86
USP28-201ENST00000003302 KHDRBS3O75525 346 aaKnown RBP9.69□□□□□ -0.86
USP28-201ENST00000003302 CD3DP04234 171 aa9.69□□□□□ -0.86
USP28-201ENST00000003302 PRMT2P55345 433 aa9.69□□□□□ -0.86
USP28-201ENST00000003302 RPS4XP62701 263 aaKnown RBP9.69□□□□□ -0.86
USP28-201ENST00000003302 ABHD13Q7L211 337 aa9.69□□□□□ -0.86
USP28-201ENST00000003302 MARCH3Q86UD3 253 aa9.69□□□□□ -0.86
USP28-201ENST00000003302 YAF2Q8IY57 180 aa9.69□□□□□ -0.86
USP28-201ENST00000003302 ZBTB44Q8NCP5 570 aa9.69□□□□□ -0.86
USP28-201ENST00000003302 OR51S1Q8NGJ8 323 aa9.69□□□□□ -0.86
USP28-201ENST00000003302 OR6N2Q8NGY6 317 aa9.69□□□□□ -0.86
USP28-201ENST00000003302 CMBLQ96DG6 245 aa9.69□□□□□ -0.86
USP28-201ENST00000003302 SGTBQ96EQ0 304 aa9.69□□□□□ -0.86
USP28-201ENST00000003302 ADOQ96SZ5 270 aa9.69□□□□□ -0.86
USP28-201ENST00000003302 STACQ99469 402 aa9.69□□□□□ -0.86
USP28-201ENST00000003302 GTF2A1LQ9UNN4 478 aa9.69□□□□□ -0.86
USP28-201ENST00000003302 B9D1Q9UPM9 204 aa9.69□□□□□ -0.86
USP28-201ENST00000003302 A0A087WV62 115 aa9.69□□□□□ -0.86
USP28-201ENST00000003302 GPR89AB7ZAQ6 455 aa9.69□□□□□ -0.86
USP28-201ENST00000003302 M0QYG6 137 aa9.69□□□□□ -0.86
USP28-201ENST00000003302 SHOXO15266 292 aa9.69□□□□□ -0.86
USP28-201ENST00000003302 CSN2P05814 226 aa9.69□□□□□ -0.86
USP28-201ENST00000003302 GPR89BP0CG08 455 aa9.69□□□□□ -0.86
USP28-201ENST00000003302 EIF2B5Q13144 721 aaKnown RBP9.69□□□□□ -0.86
USP28-201ENST00000003302 NR0B2Q15466 257 aa9.69□□□□□ -0.86
USP28-201ENST00000003302 UBE2NLQ5JXB2 153 aa9.69□□□□□ -0.86
USP28-201ENST00000003302 CDCP2Q5VXM1 449 aa9.69□□□□□ -0.86
USP28-201ENST00000003302 LIN54Q6MZP7 749 aa9.69□□□□□ -0.86
USP28-201ENST00000003302 ARHGAP11AQ6P4F7 1023 aa9.69□□□□□ -0.86
USP28-201ENST00000003302 ZNF782Q6ZMW2 699 aaPredicted RBP9.69□□□□□ -0.86
USP28-201ENST00000003302 HERVK_113Q902F9 699 aa9.69□□□□□ -0.86
USP28-201ENST00000003302 TRAF4Q9BUZ4 470 aaPredicted RBP9.69□□□□□ -0.86
USP28-201ENST00000003302 OR11A1Q9GZK7 315 aa9.69□□□□□ -0.86
USP28-201ENST00000003302 PRDM9Q9NQV7 894 aa9.69□□□□□ -0.86
USP28-201ENST00000003302 ATXN7L1Q9ULK2 861 aaPredicted RBP9.69□□□□□ -0.86
USP28-201ENST00000003302 V9GY05 133 aa9.69□□□□□ -0.86
USP28-201ENST00000003302 CCSO14618 274 aa9.68□□□□□ -0.86
USP28-201ENST00000003302 SUSD5O60279 629 aa9.68□□□□□ -0.86
USP28-201ENST00000003302 ZNF35P13682 527 aa9.68□□□□□ -0.86
USP28-201ENST00000003302 CTHP32929 405 aa9.68□□□□□ -0.86
USP28-201ENST00000003302 GAS6Q14393 721 aa9.68□□□□□ -0.86
USP28-201ENST00000003302 KIR2DS3Q14952 304 aa9.68□□□□□ -0.86
USP28-201ENST00000003302 OPCMLQ14982 345 aa9.68□□□□□ -0.86
USP28-201ENST00000003302 FAM69BQ5VUD6 431 aa9.68□□□□□ -0.86
USP28-201ENST00000003302 ULK3Q6PHR2 472 aa9.68□□□□□ -0.86
USP28-201ENST00000003302 SLITRK4Q8IW52 837 aa9.68□□□□□ -0.86
USP28-201ENST00000003302 DND1Q8IYX4 353 aaKnown RBP9.68□□□□□ -0.86
USP28-201ENST00000003302 LRRC75AQ8NAA5 344 aa9.68□□□□□ -0.86
USP28-201ENST00000003302 CAMKVQ8NCB2 501 aa9.68□□□□□ -0.86
USP28-201ENST00000003302 GALNT11Q8NCW6 608 aa9.68□□□□□ -0.86
USP28-201ENST00000003302 OR4S1Q8NGB4 309 aa9.68□□□□□ -0.86
USP28-201ENST00000003302 PHOSPHO1Q8TCT1 267 aa9.68□□□□□ -0.86
USP28-201ENST00000003302 TWSG1Q9GZX9 223 aa9.68□□□□□ -0.86
USP28-201ENST00000003302 RDH8Q9NYR8 311 aa9.68□□□□□ -0.86
USP28-201ENST00000003302 FKBP7Q9Y680 259 aa9.68□□□□□ -0.86
USP28-201ENST00000003302 CPAMD8Q8IZJ3 1885 aa9.68□□□□□ -0.86
USP28-201ENST00000003302 IGKV1D-43A0A0B4J1Z2 117 aa9.68□□□□□ -0.86
USP28-201ENST00000003302 ZNF354AO60765 605 aaPredicted RBP9.68□□□□□ -0.86
USP28-201ENST00000003302 IGHV4-34P06331 123 aa9.68□□□□□ -0.86
USP28-201ENST00000003302 RRASP10301 218 aa9.68□□□□□ -0.86
USP28-201ENST00000003302 PCGF3Q3KNV8 242 aa9.68□□□□□ -0.86
USP28-201ENST00000003302 WDR38Q5JTN6 314 aa9.68□□□□□ -0.86
USP28-201ENST00000003302 RPL22L1Q6P5R6 122 aaKnown RBP9.68□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 49.5 ms