RNA–Protein interactions for RNA: ENST00000641996.1

SCN1A-221, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

Gene SCN1A, Length 12,903 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-221ENST00000641996 HIST1H1AQ02539 215 aaPredicted RBP3.29□□□□□ -1.88
SCN1A-221ENST00000641996 ZNF542PQ5EBM4 170 aa3.29□□□□□ -1.88
SCN1A-221ENST00000641996 LANCL3Q6ZV70 420 aa3.29□□□□□ -1.88
SCN1A-221ENST00000641996 OR14L1PQ8NHC6 308 aa3.29□□□□□ -1.88
SCN1A-221ENST00000641996 TMEM176AQ96HP8 235 aa3.29□□□□□ -1.88
SCN1A-221ENST00000641996 PIGMQ9H3S5 423 aa3.29□□□□□ -1.88
SCN1A-221ENST00000641996 ABHD10Q9NUJ1 306 aa3.29□□□□□ -1.88
SCN1A-221ENST00000641996 VNN3Q9NY84 501 aa3.29□□□□□ -1.88
SCN1A-221ENST00000641996 DTX4Q9Y2E6 619 aa3.29□□□□□ -1.88
SCN1A-221ENST00000641996 SPTBN4Q9H254 2564 aa3.29□□□□□ -1.88
SCN1A-221ENST00000641996 A0A0U1RRA0 63 aa3.29□□□□□ -1.88
SCN1A-221ENST00000641996 FAM183AA6NL82 134 aa3.29□□□□□ -1.88
SCN1A-221ENST00000641996 NUDT17P0C025 328 aa3.29□□□□□ -1.88
SCN1A-221ENST00000641996 KDELR1P24390 212 aa3.29□□□□□ -1.88
SCN1A-221ENST00000641996 PTPN7P35236 360 aa3.29□□□□□ -1.88
SCN1A-221ENST00000641996 DAOAP59103 153 aa3.29□□□□□ -1.88
SCN1A-221ENST00000641996 FAM78BQ5VT40 261 aa3.29□□□□□ -1.88
SCN1A-221ENST00000641996 MFSD4AQ8N468 514 aa3.29□□□□□ -1.88
SCN1A-221ENST00000641996 OR4A4PQ8NGN8 299 aa3.29□□□□□ -1.88
SCN1A-221ENST00000641996 GGHQ92820 318 aa3.29□□□□□ -1.88
SCN1A-221ENST00000641996 FAM136AQ96C01 138 aa3.29□□□□□ -1.88
SCN1A-221ENST00000641996 PLEK2Q9NYT0 353 aa3.29□□□□□ -1.88
SCN1A-221ENST00000641996 GNG13Q9P2W3 67 aa3.29□□□□□ -1.88
SCN1A-221ENST00000641996 ARHGAP31Q2M1Z3 1444 aa3.29□□□□□ -1.88
SCN1A-221ENST00000641996 HELZP42694 1942 aaKnown RBP3.29□□□□□ -1.88
SCN1A-221ENST00000641996 CCDC168Q8NDH2 2452 aa3.29□□□□□ -1.88
SCN1A-221ENST00000641996 XDHP47989 1333 aa3.29□□□□□ -1.88
SCN1A-221ENST00000641996 TMEM189A5PLL7 270 aa3.29□□□□□ -1.88
SCN1A-221ENST00000641996 B4GALT5O43286 388 aa3.29□□□□□ -1.88
SCN1A-221ENST00000641996 OR2T1O43869 369 aa3.29□□□□□ -1.88
SCN1A-221ENST00000641996 ZNF432O94892 652 aa3.29□□□□□ -1.88
SCN1A-221ENST00000641996 SYNGR4O95473 234 aa3.29□□□□□ -1.88
SCN1A-221ENST00000641996 MANFP55145 182 aaKnown RBP3.29□□□□□ -1.88
SCN1A-221ENST00000641996 ELLP55199 621 aaPredicted RBP3.29□□□□□ -1.88
SCN1A-221ENST00000641996 PRR5P85299 388 aa3.29□□□□□ -1.88
SCN1A-221ENST00000641996 SLC36A2Q495M3 483 aa3.29□□□□□ -1.88
SCN1A-221ENST00000641996 FAM126BQ8IXS8 530 aa3.29□□□□□ -1.88
SCN1A-221ENST00000641996 LINC00301Q8NCQ3 95 aa3.29□□□□□ -1.88
SCN1A-221ENST00000641996 PIK3IP1Q96FE7 263 aa3.29□□□□□ -1.88
SCN1A-221ENST00000641996 TSSK3Q96PN8 268 aa3.29□□□□□ -1.88
SCN1A-221ENST00000641996 ATP5SQ99766 215 aa3.29□□□□□ -1.88
SCN1A-221ENST00000641996 GINS3Q9BRX5 216 aa3.29□□□□□ -1.88
SCN1A-221ENST00000641996 CRISPLD1Q9H336 500 aa3.29□□□□□ -1.88
SCN1A-221ENST00000641996 SLC5A6Q9Y289 635 aa3.29□□□□□ -1.88
SCN1A-221ENST00000641996 PAM16Q9Y3D7 125 aa3.29□□□□□ -1.88
SCN1A-221ENST00000641996 PLEKHH2Q8IVE3 1493 aa3.29□□□□□ -1.88
SCN1A-221ENST00000641996 MMP1P03956 469 aa3.29□□□□□ -1.88
SCN1A-221ENST00000641996 LAMP2P13473 410 aa3.29□□□□□ -1.88
SCN1A-221ENST00000641996 CAV2P51636 162 aa3.29□□□□□ -1.88
SCN1A-221ENST00000641996 ZNF239Q16600 458 aaKnown RBP3.29□□□□□ -1.88
SCN1A-221ENST00000641996 TMPRSS11AQ6ZMR5 421 aa3.29□□□□□ -1.88
SCN1A-221ENST00000641996 PARS2Q7L3T8 475 aaKnown RBP3.29□□□□□ -1.88
SCN1A-221ENST00000641996 VAMP8Q9BV40 100 aa3.29□□□□□ -1.88
SCN1A-221ENST00000641996 LMAN1LQ9HAT1 526 aa3.29□□□□□ -1.88
SCN1A-221ENST00000641996 FAM198AQ9UFP1 575 aa3.29□□□□□ -1.88
SCN1A-221ENST00000641996 FBXO5Q9UKT4 447 aa3.29□□□□□ -1.88
SCN1A-221ENST00000641996 FBXO4Q9UKT5 387 aa3.29□□□□□ -1.88
SCN1A-221ENST00000641996 ASB1Q9Y576 335 aa3.29□□□□□ -1.88
SCN1A-221ENST00000641996 SCRIBQ14160 1630 aa3.29□□□□□ -1.88
SCN1A-221ENST00000641996 ASXL2Q76L83 1435 aa3.29□□□□□ -1.88
SCN1A-221ENST00000641996 SMARCA4P51532 1647 aa3.29□□□□□ -1.88
SCN1A-221ENST00000641996 NRCAMQ92823 1304 aa3.29□□□□□ -1.88
SCN1A-221ENST00000641996 KIF26AQ9ULI4 1882 aaPredicted RBP3.29□□□□□ -1.88
SCN1A-221ENST00000641996 KIR2DS1A0A191URI9 304 aa3.29□□□□□ -1.88
SCN1A-221ENST00000641996 C2orf72A6NCS6 295 aa3.29□□□□□ -1.88
SCN1A-221ENST00000641996 JUNP05412 331 aaKnown RBP3.29□□□□□ -1.88
SCN1A-221ENST00000641996 ZNF30P17039 623 aa3.29□□□□□ -1.88
SCN1A-221ENST00000641996 CELP19835 753 aa3.29□□□□□ -1.88
SCN1A-221ENST00000641996 RARRES1P49788 294 aa3.29□□□□□ -1.88
SCN1A-221ENST00000641996 PPP3CAQ08209 521 aa3.29□□□□□ -1.88
SCN1A-221ENST00000641996 KIR2DS1Q14954 304 aa3.29□□□□□ -1.88
SCN1A-221ENST00000641996 PDCD1Q15116 288 aa3.29□□□□□ -1.88
SCN1A-221ENST00000641996 RPE65Q16518 533 aa3.29□□□□□ -1.88
SCN1A-221ENST00000641996 SYT6Q5T7P8 510 aaPredicted RBP3.29□□□□□ -1.88
SCN1A-221ENST00000641996 PSAPL1Q6NUJ1 521 aa3.29□□□□□ -1.88
SCN1A-221ENST00000641996 C1orf216Q8TAB5 229 aa3.29□□□□□ -1.88
SCN1A-221ENST00000641996 RXFP4Q8TDU9 374 aa3.29□□□□□ -1.88
SCN1A-221ENST00000641996 ZNF385AQ96PM9 386 aaKnown RBP3.29□□□□□ -1.88
SCN1A-221ENST00000641996 SAMD10Q9BYL1 202 aa3.29□□□□□ -1.88
SCN1A-221ENST00000641996 ZDHHC18Q9NUE0 388 aa3.29□□□□□ -1.88
SCN1A-221ENST00000641996 PAK1IP1Q9NWT1 392 aaPredicted RBP3.29□□□□□ -1.88
SCN1A-221ENST00000641996 TMEM59LQ9UK28 342 aa3.29□□□□□ -1.88
SCN1A-221ENST00000641996 UHRF1BP1LA0JNW5 1464 aa3.29□□□□□ -1.88
SCN1A-221ENST00000641996 PLCH2O75038 1416 aa3.29□□□□□ -1.88
SCN1A-221ENST00000641996 NAV2Q8IVL1 2488 aa3.29□□□□□ -1.88
SCN1A-221ENST00000641996 J3KR12 359 aa3.29□□□□□ -1.88
SCN1A-221ENST00000641996 MBTPS2O43462 519 aa3.29□□□□□ -1.88
SCN1A-221ENST00000641996 SNNO75324 88 aaPredicted RBP3.29□□□□□ -1.88
SCN1A-221ENST00000641996 GLRXP35754 106 aa3.29□□□□□ -1.88
SCN1A-221ENST00000641996 JAK3P52333 1124 aa3.29□□□□□ -1.88
SCN1A-221ENST00000641996 EMP3P54852 163 aa3.29□□□□□ -1.88
SCN1A-221ENST00000641996 GNG3P63215 75 aa3.29□□□□□ -1.88
SCN1A-221ENST00000641996 CRHR2Q13324 411 aa3.29□□□□□ -1.88
SCN1A-221ENST00000641996 GPR18Q14330 331 aa3.29□□□□□ -1.88
SCN1A-221ENST00000641996 RPEL1Q2QD12 228 aa3.29□□□□□ -1.88
SCN1A-221ENST00000641996 ARRDC1Q8N5I2 433 aa3.29□□□□□ -1.88
SCN1A-221ENST00000641996 TCEANCQ8N8B7 351 aa3.29□□□□□ -1.88
SCN1A-221ENST00000641996 LPAR1Q92633 364 aa3.29□□□□□ -1.88
SCN1A-221ENST00000641996 PTH2Q96A98 100 aa3.29□□□□□ -1.88
SCN1A-221ENST00000641996 PYCR2Q96C36 320 aa3.29□□□□□ -1.88
Retrieved 100 of 20,778 RNA–protein pairs in 36.6 ms