RNA–Protein interactions for RNA: ENST00000636685.1

CLN3-249, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 801 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-249ENST00000636685 CXCR1P25024 350 aa12.27□□□□□ -0.45
CLN3-249ENST00000636685 KLF3P57682 345 aaPredicted RBP12.27□□□□□ -0.45
CLN3-249ENST00000636685 LOXL3P58215 753 aa12.27□□□□□ -0.45
CLN3-249ENST00000636685 SEC61A1P61619 476 aaKnown RBP12.27□□□□□ -0.45
CLN3-249ENST00000636685 HBA1P69905 142 aa12.27□□□□□ -0.45
CLN3-249ENST00000636685 FUT5Q11128 374 aa12.27□□□□□ -0.45
CLN3-249ENST00000636685 RAB39AQ14964 217 aa12.27□□□□□ -0.45
CLN3-249ENST00000636685 DEFB112Q30KQ8 113 aa12.27□□□□□ -0.45
CLN3-249ENST00000636685 FRMD7Q6ZUT3 714 aa12.27□□□□□ -0.45
CLN3-249ENST00000636685 SYNPRQ8TBG9 265 aa12.27□□□□□ -0.45
CLN3-249ENST00000636685 ZDHHC16Q969W1 377 aa12.27□□□□□ -0.45
CLN3-249ENST00000636685 ELMOD3Q96FG2 381 aa12.27□□□□□ -0.45
CLN3-249ENST00000636685 CHIAQ9BZP6 476 aa12.27□□□□□ -0.45
CLN3-249ENST00000636685 OR51B6Q9H340 312 aa12.27□□□□□ -0.45
CLN3-249ENST00000636685 OR51I1Q9H343 314 aa12.27□□□□□ -0.45
CLN3-249ENST00000636685 SLC6A13Q9NSD5 602 aa12.27□□□□□ -0.45
CLN3-249ENST00000636685 EXD2Q9NVH0 621 aa12.27□□□□□ -0.45
CLN3-249ENST00000636685 ZNF224Q9NZL3 707 aa12.27□□□□□ -0.45
CLN3-249ENST00000636685 ASH2LQ9UBL3 628 aa12.27□□□□□ -0.45
CLN3-249ENST00000636685 POLR3KQ9Y2Y1 108 aaPredicted RBP12.27□□□□□ -0.45
CLN3-249ENST00000636685 UTP11Q9Y3A2 253 aaKnown RBP12.27□□□□□ -0.45
CLN3-249ENST00000636685 IGLV3-9A0A075B6K5 115 aa12.26□□□□□ -0.45
CLN3-249ENST00000636685 LOC100653049A0A140TA62 436 aa12.26□□□□□ -0.45
CLN3-249ENST00000636685 AGAP5A6NIR3 686 aa12.26□□□□□ -0.45
CLN3-249ENST00000636685 M0R3G1 203 aa12.26□□□□□ -0.45
CLN3-249ENST00000636685 LSM1O15116 133 aaKnown RBP12.26□□□□□ -0.45
CLN3-249ENST00000636685 KRT34O76011 436 aa12.26□□□□□ -0.45
CLN3-249ENST00000636685 CLPXO76031 633 aa12.26□□□□□ -0.45
CLN3-249ENST00000636685 RAB36O95755 333 aa12.26□□□□□ -0.45
CLN3-249ENST00000636685 PLATP00750 562 aa12.26□□□□□ -0.45
CLN3-249ENST00000636685 LINC00032P0C843 101 aa12.26□□□□□ -0.45
CLN3-249ENST00000636685 ZNF43P17038 809 aa12.26□□□□□ -0.45
CLN3-249ENST00000636685 CD80P33681 288 aa12.26□□□□□ -0.45
CLN3-249ENST00000636685 AQP5P55064 265 aa12.26□□□□□ -0.45
CLN3-249ENST00000636685 SELENOVP59797 346 aa12.26□□□□□ -0.45
CLN3-249ENST00000636685 ERVS71-1P61550 626 aa12.26□□□□□ -0.45
CLN3-249ENST00000636685 GNG11P61952 73 aa12.26□□□□□ -0.45
CLN3-249ENST00000636685 RAB1AP62820 205 aa12.26□□□□□ -0.45
CLN3-249ENST00000636685 GLO1Q04760 184 aa12.26□□□□□ -0.45
CLN3-249ENST00000636685 ZNF813Q6ZN06 617 aa12.26□□□□□ -0.45
CLN3-249ENST00000636685 XAGE5Q8WWM1 108 aa12.26□□□□□ -0.45
CLN3-249ENST00000636685 OIT3Q8WWZ8 545 aa12.26□□□□□ -0.45
CLN3-249ENST00000636685 ROPN1LQ96C74 230 aa12.26□□□□□ -0.45
CLN3-249ENST00000636685 PRPF18Q99633 342 aaKnown RBP12.26□□□□□ -0.45
CLN3-249ENST00000636685 RASSF4Q9H2L5 321 aa12.26□□□□□ -0.45
CLN3-249ENST00000636685 TUBB1Q9H4B7 451 aa12.26□□□□□ -0.45
CLN3-249ENST00000636685 NPHS2Q9NP85 383 aa12.26□□□□□ -0.45
CLN3-249ENST00000636685 SLCO1C1Q9NYB5 712 aa12.26□□□□□ -0.45
CLN3-249ENST00000636685 GIMAP2Q9UG22 337 aa12.26□□□□□ -0.45
CLN3-249ENST00000636685 KLHL21Q9UJP4 597 aa12.26□□□□□ -0.45
CLN3-249ENST00000636685 FIS1Q9Y3D6 152 aa12.26□□□□□ -0.45
CLN3-249ENST00000636685 A8MVM7 634 aa12.25□□□□□ -0.45
CLN3-249ENST00000636685 FAAHO00519 579 aa12.25□□□□□ -0.45
CLN3-249ENST00000636685 OR8G3PP0DMU2 310 aa12.25□□□□□ -0.45
CLN3-249ENST00000636685 PNMTP11086 282 aa12.25□□□□□ -0.45
CLN3-249ENST00000636685 ZNF250P15622 560 aa12.25□□□□□ -0.45
CLN3-249ENST00000636685 LSP1P33241 339 aa12.25□□□□□ -0.45
CLN3-249ENST00000636685 RPL3P39023 403 aaKnown RBP12.25□□□□□ -0.45
CLN3-249ENST00000636685 PROK1P58294 105 aa12.25□□□□□ -0.45
CLN3-249ENST00000636685 PAX8Q06710 450 aa12.25□□□□□ -0.45
CLN3-249ENST00000636685 C2orf54Q08AI8 447 aa12.25□□□□□ -0.45
CLN3-249ENST00000636685 EPS8Q12929 822 aa12.25□□□□□ -0.45
CLN3-249ENST00000636685 C2orf68Q2NKX9 166 aa12.25□□□□□ -0.45
CLN3-249ENST00000636685 C1orf140Q5VVS0 124 aa12.25□□□□□ -0.45
CLN3-249ENST00000636685 C11orf87Q6NUJ2 197 aa12.25□□□□□ -0.45
CLN3-249ENST00000636685 TNFAIP8L2Q6P589 184 aaPredicted RBP12.25□□□□□ -0.45
CLN3-249ENST00000636685 ZNF584Q8IVC4 421 aa12.25□□□□□ -0.45
CLN3-249ENST00000636685 PAQR4Q8N4S7 273 aaPredicted RBP12.25□□□□□ -0.45
CLN3-249ENST00000636685 KRTCAP2Q8N6L1 136 aa12.25□□□□□ -0.45
CLN3-249ENST00000636685 PIK3C3Q8NEB9 887 aa12.25□□□□□ -0.45
CLN3-249ENST00000636685 LINC01006Q8NI28 216 aa12.25□□□□□ -0.45
CLN3-249ENST00000636685 COQ8BQ96D53 544 aa12.25□□□□□ -0.45
CLN3-249ENST00000636685 OR2M2Q96R28 347 aa12.25□□□□□ -0.45
CLN3-249ENST00000636685 SLC30A2Q9BRI3 323 aa12.25□□□□□ -0.45
CLN3-249ENST00000636685 FUT8Q9BYC5 575 aa12.25□□□□□ -0.45
CLN3-249ENST00000636685 POLE3Q9NRF9 147 aa12.25□□□□□ -0.45
CLN3-249ENST00000636685 DCAF16Q9NXF7 216 aa12.25□□□□□ -0.45
CLN3-249ENST00000636685 EGFL7Q9UHF1 273 aa12.25□□□□□ -0.45
CLN3-249ENST00000636685 TMED5Q9Y3A6 229 aa12.25□□□□□ -0.45
CLN3-249ENST00000636685 TRAV40A0A0B4J280 105 aa12.24□□□□□ -0.45
CLN3-249ENST00000636685 RNF103-CHMP3A0A140T963 221 aa12.24□□□□□ -0.45
CLN3-249ENST00000636685 SLC22A23A1A5C7 686 aa12.24□□□□□ -0.45
CLN3-249ENST00000636685 PRAMEF27A3QJZ7 478 aa12.24□□□□□ -0.45
CLN3-249ENST00000636685 CFAP73A6NFT4 308 aa12.24□□□□□ -0.45
CLN3-249ENST00000636685 H3BQF6 201 aa12.24□□□□□ -0.45
CLN3-249ENST00000636685 UBOX5O94941 541 aa12.24□□□□□ -0.45
CLN3-249ENST00000636685 GUSBP08236 651 aa12.24□□□□□ -0.45
CLN3-249ENST00000636685 SNRPAP09012 282 aaKnown RBP12.24□□□□□ -0.45
CLN3-249ENST00000636685 CSF1P09603 554 aa12.24□□□□□ -0.45
CLN3-249ENST00000636685 SBK2P0C263 348 aa12.24□□□□□ -0.45
CLN3-249ENST00000636685 PATE4P0C8F1 98 aa12.24□□□□□ -0.45
CLN3-249ENST00000636685 NEFHP12036 1026 aa12.24□□□□□ -0.45
CLN3-249ENST00000636685 B4GALT1P15291 398 aa12.24□□□□□ -0.45
CLN3-249ENST00000636685 PTGR1Q14914 329 aa12.24□□□□□ -0.45
CLN3-249ENST00000636685 PDCD1Q15116 288 aa12.24□□□□□ -0.45
CLN3-249ENST00000636685 CHI3L2Q15782 390 aa12.24□□□□□ -0.45
CLN3-249ENST00000636685 ATAD3BQ5T9A4 648 aa12.24□□□□□ -0.45
CLN3-249ENST00000636685 CARD17Q5XLA6 110 aa12.24□□□□□ -0.45
CLN3-249ENST00000636685 BRD3OSQ6XYD6 125 aa12.24□□□□□ -0.45
CLN3-249ENST00000636685 TMEM123Q8N131 208 aa12.24□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 35.1 ms