RNA–Protein interactions for RNA: ENST00000636351.1

CLN3-247, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,292 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-247ENST00000636351 SAGP10523 405 aaPredicted RBP15.73■□□□□ 0.11
CLN3-247ENST00000636351 EDNRAP25101 427 aa15.73■□□□□ 0.11
CLN3-247ENST00000636351 POU3F1Q03052 451 aaPredicted RBP15.73■□□□□ 0.11
CLN3-247ENST00000636351 DGCR6Q14129 220 aa15.73■□□□□ 0.11
CLN3-247ENST00000636351 CREB3L2Q70SY1 520 aa15.73■□□□□ 0.11
CLN3-247ENST00000636351 CXorf67Q86X51 503 aaPredicted RBP15.73■□□□□ 0.11
CLN3-247ENST00000636351 MEX3DQ86XN8 651 aaKnown RBP15.73■□□□□ 0.11
CLN3-247ENST00000636351 LRRC17Q8N6Y2 441 aa15.73■□□□□ 0.11
CLN3-247ENST00000636351 TMEM45BQ96B21 275 aa15.73■□□□□ 0.11
CLN3-247ENST00000636351 MAGIXQ9H6Y5 334 aa15.73■□□□□ 0.11
CLN3-247ENST00000636351 B3GAT1Q9P2W7 334 aa15.73■□□□□ 0.11
CLN3-247ENST00000636351 AURKCQ9UQB9 309 aa15.73■□□□□ 0.11
CLN3-247ENST00000636351 POMPQ9Y244 141 aa15.73■□□□□ 0.11
CLN3-247ENST00000636351 FREM1Q5H8C1 2179 aa15.72■□□□□ 0.11
CLN3-247ENST00000636351 A0A087WUU8 490 aa15.72■□□□□ 0.11
CLN3-247ENST00000636351 TRBV4-1A0A0J9YWV2 114 aa15.72■□□□□ 0.11
CLN3-247ENST00000636351 DHRS12A0PJE2 317 aa15.72■□□□□ 0.11
CLN3-247ENST00000636351 AQP12BA6NM10 295 aa15.72■□□□□ 0.11
CLN3-247ENST00000636351 C16orf97H3BN30 126 aa15.72■□□□□ 0.11
CLN3-247ENST00000636351 RNF13O43567 381 aa15.72■□□□□ 0.11
CLN3-247ENST00000636351 AKAP8O43823 692 aaKnown RBP15.72■□□□□ 0.11
CLN3-247ENST00000636351 KRT33AO76009 404 aa15.72■□□□□ 0.11
CLN3-247ENST00000636351 GADD45GO95257 159 aa15.72■□□□□ 0.11
CLN3-247ENST00000636351 IGF2P01344 180 aa15.72■□□□□ 0.11
CLN3-247ENST00000636351 FUT1P19526 365 aa15.72■□□□□ 0.11
CLN3-247ENST00000636351 RRM2P31350 389 aa15.72■□□□□ 0.11
CLN3-247ENST00000636351 ERFP50548 548 aa15.72■□□□□ 0.11
CLN3-247ENST00000636351 CLDN17P56750 224 aa15.72■□□□□ 0.11
CLN3-247ENST00000636351 LSM11P83369 360 aaKnown RBP eCLIP15.72■□□□□ 0.11
CLN3-247ENST00000636351 SHEQ5VZ18 495 aa15.72■□□□□ 0.11
CLN3-247ENST00000636351 NIPAL3Q6P499 406 aa15.72■□□□□ 0.11
CLN3-247ENST00000636351 PODNL1Q6PEZ8 512 aa15.72■□□□□ 0.11
CLN3-247ENST00000636351 MBOAT2Q6ZWT7 520 aa15.72■□□□□ 0.11
CLN3-247ENST00000636351 EPHX4Q8IUS5 362 aa15.72■□□□□ 0.11
CLN3-247ENST00000636351 AQP12AQ8IXF9 295 aa15.72■□□□□ 0.11
CLN3-247ENST00000636351 CDK20Q8IZL9 346 aa15.72■□□□□ 0.11
CLN3-247ENST00000636351 ZIC4Q8N9L1 334 aa15.72■□□□□ 0.11
CLN3-247ENST00000636351 BPIFA2Q96DR5 249 aa15.72■□□□□ 0.11
CLN3-247ENST00000636351 RSRC1Q96IZ7 334 aaKnown RBP15.72■□□□□ 0.11
CLN3-247ENST00000636351 KRCC1Q9NPI7 259 aaPredicted RBP15.72■□□□□ 0.11
CLN3-247ENST00000636351 UPB1Q9UBR1 384 aa15.72■□□□□ 0.11
CLN3-247ENST00000636351 NDRG3Q9UGV2 375 aa15.72■□□□□ 0.11
CLN3-247ENST00000636351 SLC7A8Q9UHI5 535 aa15.72■□□□□ 0.11
CLN3-247ENST00000636351 MS4A18H0YCH9 400 aa15.71■□□□□ 0.11
CLN3-247ENST00000636351 BLOC1S5-TXNDC5H3BN57 136 aa15.71■□□□□ 0.11
CLN3-247ENST00000636351 CIB2O75838 187 aa15.71■□□□□ 0.11
CLN3-247ENST00000636351 HPRP00739 348 aa15.71■□□□□ 0.11
CLN3-247ENST00000636351 ADAP00813 363 aa15.71■□□□□ 0.11
CLN3-247ENST00000636351 ASAH2BP0C7U1 165 aa15.71■□□□□ 0.11
CLN3-247ENST00000636351 HLA-DOBP13765 273 aa15.71■□□□□ 0.11
CLN3-247ENST00000636351 IL32P24001 234 aa15.71■□□□□ 0.11
CLN3-247ENST00000636351 CCKARP32238 428 aa15.71■□□□□ 0.11
CLN3-247ENST00000636351 UGT2B10P36537 528 aa15.71■□□□□ 0.11
CLN3-247ENST00000636351 GPR4P46093 362 aa15.71■□□□□ 0.11
CLN3-247ENST00000636351 MS4A18Q3C1V0 323 aa15.71■□□□□ 0.11
CLN3-247ENST00000636351 Q5PR19 223 aa15.71■□□□□ 0.11
CLN3-247ENST00000636351 TBPL2Q6SJ96 375 aa15.71■□□□□ 0.11
CLN3-247ENST00000636351 STAC2Q6ZMT1 411 aa15.71■□□□□ 0.11
CLN3-247ENST00000636351 Q6ZT83 130 aa15.71■□□□□ 0.11
CLN3-247ENST00000636351 RNF113BQ8IZP6 322 aaKnown RBP15.71■□□□□ 0.11
CLN3-247ENST00000636351 ANKK1Q8NFD2 765 aa15.71■□□□□ 0.11
CLN3-247ENST00000636351 SLC7A13Q8TCU3 470 aa15.71■□□□□ 0.11
CLN3-247ENST00000636351 DHRS1Q96LJ7 313 aa15.71■□□□□ 0.11
CLN3-247ENST00000636351 MMADHCQ9H3L0 296 aaPredicted RBP15.71■□□□□ 0.11
CLN3-247ENST00000636351 TMCC3Q9ULS5 477 aa15.71■□□□□ 0.11
CLN3-247ENST00000636351 TMEM5Q9Y2B1 443 aa15.71■□□□□ 0.11
CLN3-247ENST00000636351 NOX1Q9Y5S8 564 aa15.71■□□□□ 0.11
CLN3-247ENST00000636351 HTR3EA5X5Y0 456 aa15.7■□□□□ 0.1
CLN3-247ENST00000636351 EFCAB9A8MZ26 197 aa15.7■□□□□ 0.1
CLN3-247ENST00000636351 ARHGEF9O43307 516 aa15.7■□□□□ 0.1
CLN3-247ENST00000636351 TRAF3IP2O43734 574 aaPredicted RBP15.7■□□□□ 0.1
CLN3-247ENST00000636351 HEXAP06865 529 aa15.7■□□□□ 0.1
CLN3-247ENST00000636351 RAP2AP10114 183 aa15.7■□□□□ 0.1
CLN3-247ENST00000636351 NTF4P34130 210 aa15.7■□□□□ 0.1
CLN3-247ENST00000636351 SELENOPP49908 381 aa15.7■□□□□ 0.1
CLN3-247ENST00000636351 FAPQ12884 760 aa15.7■□□□□ 0.1
CLN3-247ENST00000636351 IQCCQ4KMZ1 466 aa15.7■□□□□ 0.1
CLN3-247ENST00000636351 C1orf146Q5VVC0 180 aa15.7■□□□□ 0.1
CLN3-247ENST00000636351 CARD17Q5XLA6 110 aa15.7■□□□□ 0.1
CLN3-247ENST00000636351 FBXW9Q5XUX1 488 aa15.7■□□□□ 0.1
CLN3-247ENST00000636351 ANKRD34AQ69YU3 496 aa15.7■□□□□ 0.1
CLN3-247ENST00000636351 PIWIL3Q7Z3Z3 882 aaKnown RBP15.7■□□□□ 0.1
CLN3-247ENST00000636351 ADGRG5Q8IZF4 528 aa15.7■□□□□ 0.1
CLN3-247ENST00000636351 GABRG1Q8N1C3 465 aa15.7■□□□□ 0.1
CLN3-247ENST00000636351 KISS1RQ969F8 398 aaPredicted RBP15.7■□□□□ 0.1
CLN3-247ENST00000636351 MED18Q9BUE0 208 aa15.7■□□□□ 0.1
CLN3-247ENST00000636351 SLCO5A1Q9H2Y9 848 aa15.7■□□□□ 0.1
CLN3-247ENST00000636351 ASB6Q9NWX5 421 aa15.7■□□□□ 0.1
CLN3-247ENST00000636351 ZKSCAN7Q9P0L1 754 aaPredicted RBP15.7■□□□□ 0.1
CLN3-247ENST00000636351 RCE1Q9Y256 329 aa15.7■□□□□ 0.1
CLN3-247ENST00000636351 SIAH2O43255 324 aa15.69■□□□□ 0.1
CLN3-247ENST00000636351 SMPD2O60906 423 aa15.69■□□□□ 0.1
CLN3-247ENST00000636351 SLC43A1O75387 559 aa15.69■□□□□ 0.1
CLN3-247ENST00000636351 LYZL6O75951 148 aa15.69■□□□□ 0.1
CLN3-247ENST00000636351 CNOT4O95628 575 aaKnown RBP15.69■□□□□ 0.1
CLN3-247ENST00000636351 MAKP20794 623 aa15.69■□□□□ 0.1
CLN3-247ENST00000636351 AQP2P41181 271 aa15.69■□□□□ 0.1
CLN3-247ENST00000636351 MAGEA2P43356 314 aa15.69■□□□□ 0.1
CLN3-247ENST00000636351 PRKCDQ05655 676 aa15.69■□□□□ 0.1
CLN3-247ENST00000636351 RPL18Q07020 188 aaKnown RBP15.69■□□□□ 0.1
Retrieved 100 of 20,778 RNA–protein pairs in 58.5 ms