RNA–Protein interactions for RNA: ENST00000635578.1

SMARCB1-209, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1, humanhuman

TSL 1 (best)

Gene SMARCB1, Length 242 nt, Biotype protein coding, Subcellular localisation Cytosol, Exosome, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCB1-209ENST00000635578 ACTR8Q9H981 624 aa0.75□□□□□ -2.29
SMARCB1-209ENST00000635578 ROPN1Q9HAT0 212 aaPredicted RBP0.75□□□□□ -2.29
SMARCB1-209ENST00000635578 SAMSN1Q9NSI8 373 aaKnown RBP0.75□□□□□ -2.29
SMARCB1-209ENST00000635578 AGPAT5Q9NUQ2 364 aa0.75□□□□□ -2.29
SMARCB1-209ENST00000635578 ANO10Q9NW15 660 aa0.75□□□□□ -2.29
SMARCB1-209ENST00000635578 TREM2Q9NZC2 230 aa0.75□□□□□ -2.29
SMARCB1-209ENST00000635578 EHFQ9NZC4 300 aa0.75□□□□□ -2.29
SMARCB1-209ENST00000635578 CNOT2Q9NZN8 540 aaKnown RBP0.75□□□□□ -2.29
SMARCB1-209ENST00000635578 OR1A1Q9P1Q5 309 aa0.75□□□□□ -2.29
SMARCB1-209ENST00000635578 TRIM10Q9UDY6 481 aa0.75□□□□□ -2.29
SMARCB1-209ENST00000635578 IL20RAQ9UHF4 553 aa0.75□□□□□ -2.29
SMARCB1-209ENST00000635578 HOOK1Q9UJC3 728 aaKnown RBP0.75□□□□□ -2.29
SMARCB1-209ENST00000635578 ZNF221Q9UK13 617 aa0.75□□□□□ -2.29
SMARCB1-209ENST00000635578 ANGPTL2Q9UKU9 493 aa0.75□□□□□ -2.29
SMARCB1-209ENST00000635578 DDX19BQ9UMR2 479 aa0.75□□□□□ -2.29
SMARCB1-209ENST00000635578 PRPF19Q9UMS4 504 aaKnown RBP0.75□□□□□ -2.29
SMARCB1-209ENST00000635578 CHMP2BQ9UQN3 213 aa0.75□□□□□ -2.29
SMARCB1-209ENST00000635578 TRAF3IP3Q9Y228 551 aa0.75□□□□□ -2.29
SMARCB1-209ENST00000635578 RPH3AQ9Y2J0 694 aaPredicted RBP0.75□□□□□ -2.29
SMARCB1-209ENST00000635578 L3MBTL1Q9Y468 752 aa0.75□□□□□ -2.29
SMARCB1-209ENST00000635578 GMPPBQ9Y5P6 360 aa0.75□□□□□ -2.29
SMARCB1-209ENST00000635578 UBIAD1Q9Y5Z9 338 aa0.75□□□□□ -2.29
SMARCB1-209ENST00000635578 CACNG2Q9Y698 323 aa0.75□□□□□ -2.29
SMARCB1-209ENST00000635578 MAD1L1Q9Y6D9 718 aa0.75□□□□□ -2.29
SMARCB1-209ENST00000635578 MAST4O15021 2626 aa0.75□□□□□ -2.29
SMARCB1-209ENST00000635578 CELSR3Q9NYQ7 3312 aa0.75□□□□□ -2.29
SMARCB1-209ENST00000635578 BSNQ9UPA5 3926 aa0.75□□□□□ -2.29
SMARCB1-209ENST00000635578 DOPEY1Q5JWR5 2465 aa0.75□□□□□ -2.29
SMARCB1-209ENST00000635578 DSPP15924 2871 aaKnown RBP0.75□□□□□ -2.29
SMARCB1-209ENST00000635578 ARFGEF3Q5TH69 2177 aa0.74□□□□□ -2.29
SMARCB1-209ENST00000635578 CFAP46Q8IYW2 2715 aa0.74□□□□□ -2.29
SMARCB1-209ENST00000635578 USP9XQ93008 2570 aaPredicted RBP0.74□□□□□ -2.29
SMARCB1-209ENST00000635578 TLN1Q9Y490 2541 aaKnown RBP0.74□□□□□ -2.29
SMARCB1-209ENST00000635578 ATMQ13315 3056 aa0.74□□□□□ -2.29
SMARCB1-209ENST00000635578 ZZEF1O43149 2961 aa0.74□□□□□ -2.29
SMARCB1-209ENST00000635578 SPG11Q96JI7 2443 aa0.74□□□□□ -2.29
SMARCB1-209ENST00000635578 SF3B1O75533 1304 aaKnown RBP eCLIP0.74□□□□□ -2.29
SMARCB1-209ENST00000635578 NFASCO94856 1347 aa0.74□□□□□ -2.29
SMARCB1-209ENST00000635578 PHLPP2Q6ZVD8 1323 aa0.74□□□□□ -2.29
SMARCB1-209ENST00000635578 RNF103-CHMP3A0A140T963 221 aa0.74□□□□□ -2.29
SMARCB1-209ENST00000635578 A0A1B0GUA9 196 aa0.74□□□□□ -2.29
SMARCB1-209ENST00000635578 FAM230AA0A1W2PPH8 454 aa0.74□□□□□ -2.29
SMARCB1-209ENST00000635578 WI2-2373I1.2A0A1W2PRP0 233 aa0.74□□□□□ -2.29
SMARCB1-209ENST00000635578 PINLYPA6NC86 204 aa0.74□□□□□ -2.29
SMARCB1-209ENST00000635578 HELTA6NFD8 242 aa0.74□□□□□ -2.29
SMARCB1-209ENST00000635578 ARL5CA6NH57 179 aa0.74□□□□□ -2.29
SMARCB1-209ENST00000635578 SLC9B1P1A6NJY1 282 aa0.74□□□□□ -2.29
SMARCB1-209ENST00000635578 USP27XA6NNY8 438 aa0.74□□□□□ -2.29
SMARCB1-209ENST00000635578 E9PMD0 336 aa0.74□□□□□ -2.29
SMARCB1-209ENST00000635578 SPECC1L-ADORA2AF8WAN1 911 aa0.74□□□□□ -2.29
SMARCB1-209ENST00000635578 H3BMQ9 156 aa0.74□□□□□ -2.29
SMARCB1-209ENST00000635578 TMX2-CTNND1H3BSU7 103 aa0.74□□□□□ -2.29
SMARCB1-209ENST00000635578 SGK1O00141 431 aa0.74□□□□□ -2.29
SMARCB1-209ENST00000635578 SULT2B1O00204 365 aa0.74□□□□□ -2.29
SMARCB1-209ENST00000635578 HIP1O00291 1037 aa0.74□□□□□ -2.29
SMARCB1-209ENST00000635578 CLDN5O00501 218 aa0.74□□□□□ -2.29
SMARCB1-209ENST00000635578 PRRG1O14668 218 aa0.74□□□□□ -2.29
SMARCB1-209ENST00000635578 TRDMT1O14717 391 aaKnown RBP0.74□□□□□ -2.29
SMARCB1-209ENST00000635578 DUX1O43812 170 aa0.74□□□□□ -2.29
SMARCB1-209ENST00000635578 ZNF861PO60384 105 aa0.74□□□□□ -2.29
SMARCB1-209ENST00000635578 HMMRO75330 724 aa0.74□□□□□ -2.29
SMARCB1-209ENST00000635578 ALOX12BO75342 701 aa0.74□□□□□ -2.29
SMARCB1-209ENST00000635578 VPS26AO75436 327 aa0.74□□□□□ -2.29
SMARCB1-209ENST00000635578 SCGB2A1O75556 95 aa0.74□□□□□ -2.29
SMARCB1-209ENST00000635578 LYPLA1O75608 230 aaPredicted RBP0.74□□□□□ -2.29
SMARCB1-209ENST00000635578 ERLIN2O94905 339 aa0.74□□□□□ -2.29
SMARCB1-209ENST00000635578 MBD3O95983 291 aa0.74□□□□□ -2.29
SMARCB1-209ENST00000635578 IGHV3-23P01764 117 aa0.74□□□□□ -2.29
SMARCB1-209ENST00000635578 MT-ND3P03897 115 aa0.74□□□□□ -2.29
SMARCB1-209ENST00000635578 CSF2P04141 144 aa0.74□□□□□ -2.29
SMARCB1-209ENST00000635578 P04436 131 aa0.74□□□□□ -2.29
SMARCB1-209ENST00000635578 STSP08842 583 aa0.74□□□□□ -2.29
SMARCB1-209ENST00000635578 HOXC4P09017 264 aaPredicted RBP0.74□□□□□ -2.29
SMARCB1-209ENST00000635578 HBQ1P09105 142 aa0.74□□□□□ -2.29
SMARCB1-209ENST00000635578 ALOX5P09917 674 aa0.74□□□□□ -2.29
SMARCB1-209ENST00000635578 THRBP10828 461 aa0.74□□□□□ -2.29
SMARCB1-209ENST00000635578 NR2C1P13056 603 aa0.74□□□□□ -2.29
SMARCB1-209ENST00000635578 CCDC130P13994 396 aa0.74□□□□□ -2.29
SMARCB1-209ENST00000635578 STMN1P16949 149 aa0.74□□□□□ -2.29
SMARCB1-209ENST00000635578 GABRG2P18507 467 aa0.74□□□□□ -2.29
SMARCB1-209ENST00000635578 TNNI3P19429 210 aa0.74□□□□□ -2.29
SMARCB1-209ENST00000635578 COX7A1P24310 79 aa0.74□□□□□ -2.29
SMARCB1-209ENST00000635578 IGFBP5P24593 272 aa0.74□□□□□ -2.29
SMARCB1-209ENST00000635578 CHMLP26374 656 aa0.74□□□□□ -2.29
SMARCB1-209ENST00000635578 GABRR2P28476 465 aa0.74□□□□□ -2.29
SMARCB1-209ENST00000635578 ADSSP30520 456 aa0.74□□□□□ -2.29
SMARCB1-209ENST00000635578 CYLC1P35663 651 aaPredicted RBP0.74□□□□□ -2.29
SMARCB1-209ENST00000635578 DLSTP36957 453 aa0.74□□□□□ -2.29
SMARCB1-209ENST00000635578 OPRD1P41143 372 aa0.74□□□□□ -2.29
SMARCB1-209ENST00000635578 QARSP47897 775 aaKnown RBP0.74□□□□□ -2.29
SMARCB1-209ENST00000635578 APOC4P55056 127 aa0.74□□□□□ -2.29
SMARCB1-209ENST00000635578 LIM2P55344 173 aa0.74□□□□□ -2.29
SMARCB1-209ENST00000635578 PRPS1P60891 318 aa0.74□□□□□ -2.29
SMARCB1-209ENST00000635578 RND3P61587 244 aa0.74□□□□□ -2.29
SMARCB1-209ENST00000635578 GNB2P62879 340 aa0.74□□□□□ -2.29
SMARCB1-209ENST00000635578 RPL10AP62906 217 aaKnown RBP0.74□□□□□ -2.29
SMARCB1-209ENST00000635578 RPL8P62917 257 aaKnown RBP0.74□□□□□ -2.29
SMARCB1-209ENST00000635578 CSNK1G2P78368 415 aa0.74□□□□□ -2.29
SMARCB1-209ENST00000635578 SEMG2Q02383 582 aa0.74□□□□□ -2.29
SMARCB1-209ENST00000635578 OC90Q02509 493 aaPredicted RBP0.74□□□□□ -2.29
Retrieved 100 of 20,778 RNA–protein pairs in 61.7 ms