RNA–Protein interactions for RNA: ENST00000628023.3

CLN3-239, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,183 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-239ENST00000628023 KISS1RQ969F8 398 aaPredicted RBP15.98■□□□□ 0.15
CLN3-239ENST00000628023 FAM46AQ96IP4 442 aaKnown RBP15.98■□□□□ 0.15
CLN3-239ENST00000628023 ALPK1Q96QP1 1244 aa15.98■□□□□ 0.15
CLN3-239ENST00000628023 CHID1Q9BWS9 393 aa15.98■□□□□ 0.15
CLN3-239ENST00000628023 SLCO5A1Q9H2Y9 848 aa15.98■□□□□ 0.15
CLN3-239ENST00000628023 ASB6Q9NWX5 421 aa15.98■□□□□ 0.15
CLN3-239ENST00000628023 NDRG3Q9UGV2 375 aa15.98■□□□□ 0.15
CLN3-239ENST00000628023 AKAP9Q99996 3911 aa15.98■□□□□ 0.15
CLN3-239ENST00000628023 TNFRSF11BO00300 401 aa15.97■□□□□ 0.15
CLN3-239ENST00000628023 TRAF3IP2O43734 574 aaPredicted RBP15.97■□□□□ 0.15
CLN3-239ENST00000628023 OR10H3O60404 316 aa15.97■□□□□ 0.15
CLN3-239ENST00000628023 SLC43A1O75387 559 aa15.97■□□□□ 0.15
CLN3-239ENST00000628023 HLA-DOBP13765 273 aa15.97■□□□□ 0.15
CLN3-239ENST00000628023 DNAJA1P31689 397 aaKnown RBP15.97■□□□□ 0.15
CLN3-239ENST00000628023 CCKARP32238 428 aa15.97■□□□□ 0.15
CLN3-239ENST00000628023 IFNGR2P38484 337 aa15.97■□□□□ 0.15
CLN3-239ENST00000628023 AQP2P41181 271 aa15.97■□□□□ 0.15
CLN3-239ENST00000628023 PCYT1AP49585 367 aa15.97■□□□□ 0.15
CLN3-239ENST00000628023 SELENOPP49908 381 aa15.97■□□□□ 0.15
CLN3-239ENST00000628023 RPL18Q07020 188 aaKnown RBP15.97■□□□□ 0.15
CLN3-239ENST00000628023 FAPQ12884 760 aa15.97■□□□□ 0.15
CLN3-239ENST00000628023 ITGADQ13349 1161 aa15.97■□□□□ 0.15
CLN3-239ENST00000628023 P2RY6Q15077 328 aa15.97■□□□□ 0.15
CLN3-239ENST00000628023 SEC23BQ15437 767 aa15.97■□□□□ 0.15
CLN3-239ENST00000628023 CARD17Q5XLA6 110 aa15.97■□□□□ 0.15
CLN3-239ENST00000628023 STAC2Q6ZMT1 411 aa15.97■□□□□ 0.15
CLN3-239ENST00000628023 ASRGL1Q7L266 308 aa15.97■□□□□ 0.15
CLN3-239ENST00000628023 OAFQ86UD1 273 aa15.97■□□□□ 0.15
CLN3-239ENST00000628023 GABRG1Q8N1C3 465 aa15.97■□□□□ 0.15
CLN3-239ENST00000628023 POMGNT2Q8NAT1 580 aa15.97■□□□□ 0.15
CLN3-239ENST00000628023 OR13C2Q8NGS9 318 aa15.97■□□□□ 0.15
CLN3-239ENST00000628023 LINC01560Q8TB33 94 aa15.97■□□□□ 0.15
CLN3-239ENST00000628023 LIPHQ8WWY8 451 aa15.97■□□□□ 0.15
CLN3-239ENST00000628023 MED18Q9BUE0 208 aa15.97■□□□□ 0.15
CLN3-239ENST00000628023 POLDIP3Q9BY77 421 aaKnown RBP15.97■□□□□ 0.15
CLN3-239ENST00000628023 NDEL1Q9GZM8 345 aa15.97■□□□□ 0.15
CLN3-239ENST00000628023 YY1AP1Q9H869 796 aa15.97■□□□□ 0.15
CLN3-239ENST00000628023 REEP1Q9H902 201 aa15.97■□□□□ 0.15
CLN3-239ENST00000628023 MED29Q9NX70 200 aa15.97■□□□□ 0.15
CLN3-239ENST00000628023 TAS2R5Q9NYW4 299 aa15.97■□□□□ 0.15
CLN3-239ENST00000628023 FREM1Q5H8C1 2179 aa15.97■□□□□ 0.15
CLN3-239ENST00000628023 SETD2Q9BYW2 2564 aaPredicted RBP15.96■□□□□ 0.15
CLN3-239ENST00000628023 TRAV27A0A087WT01 109 aa15.96■□□□□ 0.15
CLN3-239ENST00000628023 A0A1W2PRG6 482 aa15.96■□□□□ 0.15
CLN3-239ENST00000628023 TCRBV3S1A0A5B6 114 aa15.96■□□□□ 0.15
CLN3-239ENST00000628023 SH3PXD2BA1X283 911 aa15.96■□□□□ 0.15
CLN3-239ENST00000628023 SH3D21A4FU49 640 aa15.96■□□□□ 0.15
CLN3-239ENST00000628023 OR6C65A6NJZ3 312 aa15.96■□□□□ 0.15
CLN3-239ENST00000628023 ZNF726A6NNF4 738 aa15.96■□□□□ 0.15
CLN3-239ENST00000628023 MCIDASD6RGH6 385 aa15.96■□□□□ 0.15
CLN3-239ENST00000628023 GNGT2O14610 69 aa15.96■□□□□ 0.15
CLN3-239ENST00000628023 LYZL6O75951 148 aa15.96■□□□□ 0.15
CLN3-239ENST00000628023 IFNGR1P15260 489 aa15.96■□□□□ 0.15
CLN3-239ENST00000628023 PSMB1P20618 241 aaKnown RBP15.96■□□□□ 0.15
CLN3-239ENST00000628023 SLC9A3P48764 834 aa15.96■□□□□ 0.15
CLN3-239ENST00000628023 ZP4Q12836 540 aa15.96■□□□□ 0.15
CLN3-239ENST00000628023 TAF11Q15544 211 aa15.96■□□□□ 0.15
CLN3-239ENST00000628023 TSPO2Q5TGU0 170 aa15.96■□□□□ 0.15
CLN3-239ENST00000628023 OR2T5Q6IEZ7 315 aa15.96■□□□□ 0.15
CLN3-239ENST00000628023 ABHD12BQ7Z5M8 362 aaPredicted RBP15.96■□□□□ 0.15
CLN3-239ENST00000628023 GPR137CQ8N3F9 429 aa15.96■□□□□ 0.15
CLN3-239ENST00000628023 STEAP2Q8NFT2 490 aa15.96■□□□□ 0.15
CLN3-239ENST00000628023 OR2T29Q8NH02 315 aa15.96■□□□□ 0.15
CLN3-239ENST00000628023 OR51A7Q8NH64 312 aa15.96■□□□□ 0.15
CLN3-239ENST00000628023 ALKBH3Q96Q83 286 aaPredicted RBP15.96■□□□□ 0.15
CLN3-239ENST00000628023 EMC6Q9BV81 110 aa15.96■□□□□ 0.15
CLN3-239ENST00000628023 HDHD5Q9BXW7 423 aa15.96■□□□□ 0.15
CLN3-239ENST00000628023 ACTR6Q9GZN1 396 aa15.96■□□□□ 0.15
CLN3-239ENST00000628023 INIPQ9NRY2 104 aa15.96■□□□□ 0.15
CLN3-239ENST00000628023 SLC7A10Q9NS82 523 aa15.96■□□□□ 0.15
CLN3-239ENST00000628023 CRIM1Q9NZV1 1036 aa15.96■□□□□ 0.15
CLN3-239ENST00000628023 MALT1Q9UDY8 824 aa15.96■□□□□ 0.15
CLN3-239ENST00000628023 GPR52Q9Y2T5 361 aa15.96■□□□□ 0.15
CLN3-239ENST00000628023 SAMHD1Q9Y3Z3 626 aaKnown RBP15.96■□□□□ 0.15
CLN3-239ENST00000628023 ANKHD1Q8IWZ3 2542 aaKnown RBP15.96■□□□□ 0.14
CLN3-239ENST00000628023 CIB4A0PJX0 185 aa15.95■□□□□ 0.14
CLN3-239ENST00000628023 ZNF587BE7ETH6 402 aa15.95■□□□□ 0.14
CLN3-239ENST00000628023 CLOCKO15516 846 aa15.95■□□□□ 0.14
CLN3-239ENST00000628023 CTAG2O75638 210 aa15.95■□□□□ 0.14
CLN3-239ENST00000628023 CST1P01037 141 aa15.95■□□□□ 0.14
CLN3-239ENST00000628023 F13BP05160 661 aa15.95■□□□□ 0.14
CLN3-239ENST00000628023 IGHV1-2P23083 117 aa15.95■□□□□ 0.14
CLN3-239ENST00000628023 BIDP55957 195 aa15.95■□□□□ 0.14
CLN3-239ENST00000628023 TSC22D1Q15714 1073 aa15.95■□□□□ 0.14
CLN3-239ENST00000628023 ALG10Q5BKT4 473 aa15.95■□□□□ 0.14
CLN3-239ENST00000628023 SFRP5Q5T4F7 317 aa15.95■□□□□ 0.14
CLN3-239ENST00000628023 ANKRD34AQ69YU3 496 aa15.95■□□□□ 0.14
CLN3-239ENST00000628023 TMPRSS11FQ6ZWK6 438 aa15.95■□□□□ 0.14
CLN3-239ENST00000628023 SLC35D2Q76EJ3 337 aa15.95■□□□□ 0.14
CLN3-239ENST00000628023 BHLHA15Q7RTS1 189 aaPredicted RBP15.95■□□□□ 0.14
CLN3-239ENST00000628023 MOSPD2Q8NHP6 518 aa15.95■□□□□ 0.14
CLN3-239ENST00000628023 FAM222BQ8WU58 562 aa15.95■□□□□ 0.14
CLN3-239ENST00000628023 NINJ1Q92982 152 aa15.95■□□□□ 0.14
CLN3-239ENST00000628023 ZC3HAV1LQ96H79 300 aaKnown RBP15.95■□□□□ 0.14
CLN3-239ENST00000628023 TXNDC15Q96J42 360 aa15.95■□□□□ 0.14
CLN3-239ENST00000628023 OR2M2Q96R28 347 aa15.95■□□□□ 0.14
CLN3-239ENST00000628023 TAS2R16Q9NYV7 291 aa15.95■□□□□ 0.14
CLN3-239ENST00000628023 HIF3AQ9Y2N7 669 aa15.95■□□□□ 0.14
CLN3-239ENST00000628023 LYVE1Q9Y5Y7 322 aa15.95■□□□□ 0.14
CLN3-239ENST00000628023 U3KQV3 271 aa15.95■□□□□ 0.14
Retrieved 100 of 20,778 RNA–protein pairs in 31.4 ms