RNA–Protein interactions for RNA: ENST00000617339.4

SHROOM1-208, Transcript of shroom family member 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene SHROOM1, Length 3,638 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM1-208ENST00000617339 FGF9P31371 208 aaPredicted RBP13.24□□□□□ -0.29
SHROOM1-208ENST00000617339 NR0B1P51843 470 aaKnown RBP13.24□□□□□ -0.29
SHROOM1-208ENST00000617339 CTAG1AP78358 180 aa13.24□□□□□ -0.29
SHROOM1-208ENST00000617339 FOXK2Q01167 660 aa13.24□□□□□ -0.29
SHROOM1-208ENST00000617339 MELKQ14680 651 aa13.24□□□□□ -0.29
SHROOM1-208ENST00000617339 ZNF613Q6PF04 617 aa13.24□□□□□ -0.29
SHROOM1-208ENST00000617339 OR10Z1Q8NGY1 313 aa13.24□□□□□ -0.29
SHROOM1-208ENST00000617339 LILRB1Q8NHL6 650 aaPredicted RBP13.24□□□□□ -0.29
SHROOM1-208ENST00000617339 MAFAQ8NHW3 353 aaPredicted RBP13.24□□□□□ -0.29
SHROOM1-208ENST00000617339 RASD2Q96D21 266 aa13.24□□□□□ -0.29
SHROOM1-208ENST00000617339 SMIM10Q96HG1 83 aa13.24□□□□□ -0.29
SHROOM1-208ENST00000617339 GAL3ST1Q99999 423 aa13.24□□□□□ -0.29
SHROOM1-208ENST00000617339 PRSS27Q9BQR3 290 aa13.24□□□□□ -0.29
SHROOM1-208ENST00000617339 ARPC4-TTLL3A0A0A6YYG9 625 aa13.23□□□□□ -0.29
SHROOM1-208ENST00000617339 TMEM129A0AVI4 362 aa13.23□□□□□ -0.29
SHROOM1-208ENST00000617339 OIP5O43482 229 aa13.23□□□□□ -0.29
SHROOM1-208ENST00000617339 FZD7O75084 574 aa13.23□□□□□ -0.29
SHROOM1-208ENST00000617339 B3GALNT1O75752 331 aa13.23□□□□□ -0.29
SHROOM1-208ENST00000617339 GPANK1O95872 356 aa13.23□□□□□ -0.29
SHROOM1-208ENST00000617339 SNRPBP14678 240 aaKnown RBP13.23□□□□□ -0.29
SHROOM1-208ENST00000617339 VEGFCP49767 419 aa13.23□□□□□ -0.29
SHROOM1-208ENST00000617339 EEF1A1P68104 462 aaKnown RBP13.23□□□□□ -0.29
SHROOM1-208ENST00000617339 RAB40BQ12829 278 aa13.23□□□□□ -0.29
SHROOM1-208ENST00000617339 GSG1Q2KHT4 349 aa13.23□□□□□ -0.29
SHROOM1-208ENST00000617339 ZNF578Q96N58 590 aaPredicted RBP13.23□□□□□ -0.29
SHROOM1-208ENST00000617339 GAREM1Q9H706 876 aa13.23□□□□□ -0.29
SHROOM1-208ENST00000617339 AUNIPQ9H7T9 357 aa13.23□□□□□ -0.29
SHROOM1-208ENST00000617339 ING1Q9UK53 422 aaPredicted RBP13.23□□□□□ -0.29
SHROOM1-208ENST00000617339 EXOSC1Q9Y3B2 195 aaKnown RBP13.23□□□□□ -0.29
SHROOM1-208ENST00000617339 MEIKINA0A087WXM9 373 aa13.23□□□□□ -0.29
SHROOM1-208ENST00000617339 RIIAD1A6NNX1 92 aa13.23□□□□□ -0.29
SHROOM1-208ENST00000617339 METTL12A8MUP2 240 aa13.23□□□□□ -0.29
SHROOM1-208ENST00000617339 IDSB3KWA1 339 aa13.23□□□□□ -0.29
SHROOM1-208ENST00000617339 HCRTR2O43614 444 aa13.23□□□□□ -0.29
SHROOM1-208ENST00000617339 RAB38P57729 211 aa13.23□□□□□ -0.29
SHROOM1-208ENST00000617339 SNTB2Q13425 540 aaKnown RBP13.23□□□□□ -0.29
SHROOM1-208ENST00000617339 EIPR1Q53HC9 387 aa13.23□□□□□ -0.29
SHROOM1-208ENST00000617339 NPSR1Q6W5P4 371 aa13.23□□□□□ -0.29
SHROOM1-208ENST00000617339 ZNF350Q9GZX5 532 aa13.23□□□□□ -0.29
SHROOM1-208ENST00000617339 ZNF69Q9UC07 566 aa13.23□□□□□ -0.29
SHROOM1-208ENST00000617339 SIRT4Q9Y6E7 314 aaPredicted RBP13.23□□□□□ -0.29
SHROOM1-208ENST00000617339 ARPC5O15511 151 aa13.22□□□□□ -0.29
SHROOM1-208ENST00000617339 E2F1Q01094 437 aa13.22□□□□□ -0.29
SHROOM1-208ENST00000617339 FAAP20Q6NZ36 180 aa13.22□□□□□ -0.29
SHROOM1-208ENST00000617339 ZNF433Q8N7K0 673 aaPredicted RBP13.22□□□□□ -0.29
SHROOM1-208ENST00000617339 PTP4A1Q93096 173 aa13.22□□□□□ -0.29
SHROOM1-208ENST00000617339 RFKQ969G6 155 aa13.22□□□□□ -0.29
SHROOM1-208ENST00000617339 FUZQ9BT04 418 aa13.22□□□□□ -0.29
SHROOM1-208ENST00000617339 ALG8Q9BVK2 526 aa13.22□□□□□ -0.29
SHROOM1-208ENST00000617339 COPS7AQ9UBW8 275 aa13.22□□□□□ -0.29
SHROOM1-208ENST00000617339 CBLCQ9ULV8 474 aa13.22□□□□□ -0.29
SHROOM1-208ENST00000617339 PCDHGA9Q9Y5G4 932 aaKnown RBP13.22□□□□□ -0.29
SHROOM1-208ENST00000617339 TNFSF14O43557 240 aa13.22□□□□□ -0.29
SHROOM1-208ENST00000617339 SLC35E2P0CK97 266 aa13.22□□□□□ -0.29
SHROOM1-208ENST00000617339 TSFMP43897 325 aaKnown RBP13.22□□□□□ -0.29
SHROOM1-208ENST00000617339 MGAT2Q10469 447 aa13.22□□□□□ -0.29
SHROOM1-208ENST00000617339 DECR1Q16698 335 aa13.22□□□□□ -0.29
SHROOM1-208ENST00000617339 LRRC28Q86X40 367 aaPredicted RBP13.22□□□□□ -0.29
SHROOM1-208ENST00000617339 GJD3Q8N144 294 aa13.22□□□□□ -0.29
SHROOM1-208ENST00000617339 OR8K3Q8NH51 312 aa13.22□□□□□ -0.29
SHROOM1-208ENST00000617339 NUDT22Q9BRQ3 303 aa13.22□□□□□ -0.29
SHROOM1-208ENST00000617339 NXF5Q9H1B4 397 aaKnown RBP13.22□□□□□ -0.29
SHROOM1-208ENST00000617339 CYSLTR2Q9NS75 346 aa13.22□□□□□ -0.29
SHROOM1-208ENST00000617339 FGF21Q9NSA1 209 aa13.22□□□□□ -0.29
SHROOM1-208ENST00000617339 HPF1Q9NWY4 346 aa13.22□□□□□ -0.29
SHROOM1-208ENST00000617339 SPTAN1Q13813 2472 aaKnown RBP13.22□□□□□ -0.29
SHROOM1-208ENST00000617339 TVP23AA6NH52 213 aa13.22□□□□□ -0.29
SHROOM1-208ENST00000617339 PATE3B3GLJ2 98 aa13.22□□□□□ -0.29
SHROOM1-208ENST00000617339 H0YC42 278 aa13.22□□□□□ -0.29
SHROOM1-208ENST00000617339 SYT5O00445 386 aa13.22□□□□□ -0.29
SHROOM1-208ENST00000617339 OR5F1O95221 314 aa13.22□□□□□ -0.29
SHROOM1-208ENST00000617339 ATP1B1P05026 303 aa13.22□□□□□ -0.29
SHROOM1-208ENST00000617339 CXCL2P19875 107 aa13.22□□□□□ -0.29
SHROOM1-208ENST00000617339 GAS1P54826 345 aa13.22□□□□□ -0.29
SHROOM1-208ENST00000617339 FXYD6P3P58550 94 aa13.22□□□□□ -0.29
SHROOM1-208ENST00000617339 TRIM61Q5EBN2 209 aa13.22□□□□□ -0.29
SHROOM1-208ENST00000617339 PLXDC1Q8IUK5 500 aa13.22□□□□□ -0.29
SHROOM1-208ENST00000617339 ZNF511Q8NB15 262 aa13.22□□□□□ -0.29
SHROOM1-208ENST00000617339 OR4D9Q8NGE8 314 aa13.22□□□□□ -0.29
SHROOM1-208ENST00000617339 C4orf36Q96KX1 117 aa13.22□□□□□ -0.29
SHROOM1-208ENST00000617339 USB1Q9BQ65 265 aaKnown RBP13.22□□□□□ -0.29
SHROOM1-208ENST00000617339 TBL1XR1Q9BZK7 514 aa13.22□□□□□ -0.29
SHROOM1-208ENST00000617339 SLC6A5Q9Y345 797 aa13.22□□□□□ -0.29
SHROOM1-208ENST00000617339 RNF215Q9Y6U7 377 aa13.22□□□□□ -0.29
SHROOM1-208ENST00000617339 BRINP1O60477 761 aa13.21□□□□□ -0.29
SHROOM1-208ENST00000617339 FPR3P25089 353 aa13.21□□□□□ -0.29
SHROOM1-208ENST00000617339 STAT5AP42229 794 aa13.21□□□□□ -0.29
SHROOM1-208ENST00000617339 DSG2Q14126 1118 aa13.21□□□□□ -0.29
SHROOM1-208ENST00000617339 SLC36A2Q495M3 483 aa13.21□□□□□ -0.29
SHROOM1-208ENST00000617339 HSD17B12Q53GQ0 312 aa13.21□□□□□ -0.29
SHROOM1-208ENST00000617339 HEPHL1Q6MZM0 1159 aa13.21□□□□□ -0.29
SHROOM1-208ENST00000617339 LANCL3Q6ZV70 420 aa13.21□□□□□ -0.29
SHROOM1-208ENST00000617339 CEACAM19Q7Z692 300 aa13.21□□□□□ -0.29
SHROOM1-208ENST00000617339 ACBD7Q8N6N7 88 aa13.21□□□□□ -0.29
SHROOM1-208ENST00000617339 ARIH2OSQ8N7S6 290 aa13.21□□□□□ -0.29
SHROOM1-208ENST00000617339 REG4Q9BYZ8 158 aa13.21□□□□□ -0.29
SHROOM1-208ENST00000617339 KRCC1Q9NPI7 259 aaPredicted RBP13.21□□□□□ -0.29
SHROOM1-208ENST00000617339 IL20Q9NYY1 176 aa13.21□□□□□ -0.29
SHROOM1-208ENST00000617339 FXYD6-FXYD2A0A087WZ82 144 aa13.21□□□□□ -0.29
SHROOM1-208ENST00000617339 A0A1B0GVI7 797 aa13.21□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 21.6 ms