RNA–Protein interactions for RNA: ENST00000616154.1

CDX1-202, Transcript of caudal type homeobox 1, humanhuman

TSL 1 (best) BASIC

Gene CDX1, Length 1,343 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1-202ENST00000616154 OR9K2Q8NGE7 335 aa16.55■□□□□ 0.24
CDX1-202ENST00000616154 MFSD8Q8NHS3 518 aa16.55■□□□□ 0.24
CDX1-202ENST00000616154 DNAJA4Q8WW22 397 aaPredicted RBP16.55■□□□□ 0.24
CDX1-202ENST00000616154 BOD1Q96IK1 185 aa16.55■□□□□ 0.24
CDX1-202ENST00000616154 ZNF583Q96ND8 569 aa16.55■□□□□ 0.24
CDX1-202ENST00000616154 TMEM160Q9NX00 188 aa16.55■□□□□ 0.24
CDX1-202ENST00000616154 CDC42EP3Q9UKI2 254 aa16.55■□□□□ 0.24
CDX1-202ENST00000616154 MALRD1Q5VYJ5 2156 aa16.55■□□□□ 0.24
CDX1-202ENST00000616154 A0A1B0GWA3 101 aa16.54■□□□□ 0.24
CDX1-202ENST00000616154 ATP6V1G2-DDX39BF2Z307 99 aa16.54■□□□□ 0.24
CDX1-202ENST00000616154 GSC2O15499 205 aa16.54■□□□□ 0.24
CDX1-202ENST00000616154 WNT11O96014 354 aa16.54■□□□□ 0.24
CDX1-202ENST00000616154 HSD17B1P14061 328 aa16.54■□□□□ 0.24
CDX1-202ENST00000616154 PGM2L1Q6PCE3 622 aa16.54■□□□□ 0.24
CDX1-202ENST00000616154 KLHL24Q6TFL4 600 aa16.54■□□□□ 0.24
CDX1-202ENST00000616154 AAED1Q7RTV5 226 aa16.54■□□□□ 0.24
CDX1-202ENST00000616154 PROX1Q92786 737 aa16.54■□□□□ 0.24
CDX1-202ENST00000616154 ZNF385AQ96PM9 386 aaKnown RBP16.54■□□□□ 0.24
CDX1-202ENST00000616154 CDRT15Q96T59 188 aa16.54■□□□□ 0.24
CDX1-202ENST00000616154 TAPBPLQ9BX59 468 aa16.54■□□□□ 0.24
CDX1-202ENST00000616154 CADM1Q9BY67 442 aaKnown RBP16.54■□□□□ 0.24
CDX1-202ENST00000616154 PMF1-BGLAPU3KQ54 211 aa16.54■□□□□ 0.24
CDX1-202ENST00000616154 IGKV1D-42A0A075B6H8 117 aa16.53■□□□□ 0.24
CDX1-202ENST00000616154 TPST2O60704 377 aa16.53■□□□□ 0.24
CDX1-202ENST00000616154 FMO6PO60774 539 aa16.53■□□□□ 0.24
CDX1-202ENST00000616154 DNAJC8O75937 253 aaPredicted RBP16.53■□□□□ 0.24
CDX1-202ENST00000616154 AKR7A3O95154 331 aa16.53■□□□□ 0.24
CDX1-202ENST00000616154 AHSA1O95433 338 aa16.53■□□□□ 0.24
CDX1-202ENST00000616154 C8BP07358 591 aa16.53■□□□□ 0.24
CDX1-202ENST00000616154 PNMTP11086 282 aa16.53■□□□□ 0.24
CDX1-202ENST00000616154 PCGF2P35227 344 aa16.53■□□□□ 0.24
CDX1-202ENST00000616154 CYP51A1Q16850 503 aa16.53■□□□□ 0.24
CDX1-202ENST00000616154 SAMD4BQ5PRF9 694 aaKnown RBP16.53■□□□□ 0.24
CDX1-202ENST00000616154 SWT1Q5T5J6 900 aaKnown RBP16.53■□□□□ 0.24
CDX1-202ENST00000616154 ABHD12BQ7Z5M8 362 aaPredicted RBP16.53■□□□□ 0.24
CDX1-202ENST00000616154 ARMC8Q8IUR7 673 aa16.53■□□□□ 0.24
CDX1-202ENST00000616154 OR6S1Q8NH40 331 aa16.53■□□□□ 0.24
CDX1-202ENST00000616154 NANOS1Q8WY41 292 aaKnown RBP16.53■□□□□ 0.24
CDX1-202ENST00000616154 TMEM158Q8WZ71 300 aa16.53■□□□□ 0.24
CDX1-202ENST00000616154 SLC38A4Q969I6 547 aa16.53■□□□□ 0.24
CDX1-202ENST00000616154 MMADHCQ9H3L0 296 aaPredicted RBP16.53■□□□□ 0.24
CDX1-202ENST00000616154 OBP2BQ9NPH6 170 aa16.53■□□□□ 0.24
CDX1-202ENST00000616154 A0A0B4J2E0 115 aa16.52■□□□□ 0.24
CDX1-202ENST00000616154 A0A1B0GX12 115 aa16.52■□□□□ 0.24
CDX1-202ENST00000616154 FAM220BPB1ANY3 271 aa16.52■□□□□ 0.24
CDX1-202ENST00000616154 LGI1O95970 557 aa16.52■□□□□ 0.24
CDX1-202ENST00000616154 F12P00748 615 aaPredicted RBP16.52■□□□□ 0.24
CDX1-202ENST00000616154 AQP1P29972 269 aa16.52■□□□□ 0.24
CDX1-202ENST00000616154 GSK3BP49841 420 aa16.52■□□□□ 0.24
CDX1-202ENST00000616154 LIPEQ05469 1076 aa16.52■□□□□ 0.24
CDX1-202ENST00000616154 SWI5Q1ZZU3 235 aa16.52■□□□□ 0.24
CDX1-202ENST00000616154 HIKESHIQ53FT3 197 aa16.52■□□□□ 0.24
CDX1-202ENST00000616154 ULK3Q6PHR2 472 aa16.52■□□□□ 0.24
CDX1-202ENST00000616154 GPR32P1Q8NGA4 272 aa16.52■□□□□ 0.24
CDX1-202ENST00000616154 OR10A6Q8NH74 314 aa16.52■□□□□ 0.24
CDX1-202ENST00000616154 KCNK17Q96T54 332 aa16.52■□□□□ 0.24
CDX1-202ENST00000616154 ARHGDIGQ99819 225 aa16.52■□□□□ 0.24
CDX1-202ENST00000616154 ECSITQ9BQ95 431 aa16.52■□□□□ 0.24
CDX1-202ENST00000616154 WFDC6Q9BQY6 131 aa16.52■□□□□ 0.24
CDX1-202ENST00000616154 LPAR3Q9UBY5 353 aa16.52■□□□□ 0.24
CDX1-202ENST00000616154 MOKQ9UQ07 419 aa16.52■□□□□ 0.24
CDX1-202ENST00000616154 RASD1Q9Y272 281 aa16.52■□□□□ 0.24
CDX1-202ENST00000616154 SVEP1Q4LDE5 3571 aa16.52■□□□□ 0.23
CDX1-202ENST00000616154 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP16.52■□□□□ 0.23
CDX1-202ENST00000616154 A0A087WUJ7 227 aa16.51■□□□□ 0.23
CDX1-202ENST00000616154 OR2T1O43869 369 aa16.51■□□□□ 0.23
CDX1-202ENST00000616154 IGHV4-31P0DP07 118 aa16.51■□□□□ 0.23
CDX1-202ENST00000616154 USF1P22415 310 aaPredicted RBP16.51■□□□□ 0.23
CDX1-202ENST00000616154 RGS8P57771 180 aaPredicted RBP16.51■□□□□ 0.23
CDX1-202ENST00000616154 DUSP7Q16829 419 aa16.51■□□□□ 0.23
CDX1-202ENST00000616154 MST1LQ2TV78 715 aa16.51■□□□□ 0.23
CDX1-202ENST00000616154 ALG10BQ5I7T1 473 aa16.51■□□□□ 0.23
CDX1-202ENST00000616154 FAM69AQ5T7M9 428 aa16.51■□□□□ 0.23
CDX1-202ENST00000616154 CYB5R2Q6BCY4 276 aa16.51■□□□□ 0.23
CDX1-202ENST00000616154 CCDC80Q76M96 950 aa16.51■□□□□ 0.23
CDX1-202ENST00000616154 PATL1Q86TB9 770 aaKnown RBP16.51■□□□□ 0.23
CDX1-202ENST00000616154 GPAT4Q86UL3 456 aa16.51■□□□□ 0.23
CDX1-202ENST00000616154 KTI12Q96EK9 354 aaPredicted RBP16.51■□□□□ 0.23
CDX1-202ENST00000616154 ADPRHL2Q9NX46 363 aa16.51■□□□□ 0.23
CDX1-202ENST00000616154 RPS6KB2Q9UBS0 482 aa16.51■□□□□ 0.23
CDX1-202ENST00000616154 LOC102725191A0A1B0GVB3 256 aa16.5■□□□□ 0.23
CDX1-202ENST00000616154 M0QX08 132 aa16.5■□□□□ 0.23
CDX1-202ENST00000616154 PHF1O43189 567 aaPredicted RBP16.5■□□□□ 0.23
CDX1-202ENST00000616154 LY6HO94772 140 aa16.5■□□□□ 0.23
CDX1-202ENST00000616154 ZNF16P17020 682 aaPredicted RBP16.5■□□□□ 0.23
CDX1-202ENST00000616154 CDH2P19022 906 aaPredicted RBP16.5■□□□□ 0.23
CDX1-202ENST00000616154 PAX7P23759 505 aa16.5■□□□□ 0.23
CDX1-202ENST00000616154 CRYBA2P53672 197 aa16.5■□□□□ 0.23
CDX1-202ENST00000616154 VMACQ2NL98 169 aa16.5■□□□□ 0.23
CDX1-202ENST00000616154 TBRG1Q3YBR2 411 aa16.5■□□□□ 0.23
CDX1-202ENST00000616154 INTS11Q5TA45 600 aaKnown RBP16.5■□□□□ 0.23
CDX1-202ENST00000616154 CREB3L2Q70SY1 520 aa16.5■□□□□ 0.23
CDX1-202ENST00000616154 EPHX4Q8IUS5 362 aa16.5■□□□□ 0.23
CDX1-202ENST00000616154 ADPRHL1Q8NDY3 354 aa16.5■□□□□ 0.23
CDX1-202ENST00000616154 OR1K1Q8NGR3 316 aa16.5■□□□□ 0.23
CDX1-202ENST00000616154 FBXO17Q96EF6 278 aa16.5■□□□□ 0.23
CDX1-202ENST00000616154 SLC47A1Q96FL8 570 aa16.5■□□□□ 0.23
CDX1-202ENST00000616154 SLC38A2Q96QD8 506 aa16.5■□□□□ 0.23
CDX1-202ENST00000616154 THTPAQ9BU02 230 aa16.5■□□□□ 0.23
CDX1-202ENST00000616154 PCDHAC1Q9H158 963 aa16.5■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 26.3 ms