RNA–Protein interactions for RNA: ENST00000601150.5

TRIM28-215, Transcript of tripartite motif containing 28, humanhuman

TSL 3

Gene TRIM28, Length 915 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-215ENST00000601150 MAN2C1Q9NTJ4 1040 aa14.8□□□□□ -0.04
TRIM28-215ENST00000601150 MED29Q9NX70 200 aa14.8□□□□□ -0.04
TRIM28-215ENST00000601150 ITGB1BP2Q9UKP3 347 aa14.8□□□□□ -0.04
TRIM28-215ENST00000601150 FAM32AQ9Y421 112 aaKnown RBP14.8□□□□□ -0.04
TRIM28-215ENST00000601150 SLC25A15Q9Y619 301 aa14.8□□□□□ -0.04
TRIM28-215ENST00000601150 SLC35F4A4IF30 521 aa14.79□□□□□ -0.04
TRIM28-215ENST00000601150 BLOC1S5-TXNDC5H3BN57 136 aa14.79□□□□□ -0.04
TRIM28-215ENST00000601150 RPL36A-HNRNPH2H7BZ11 118 aa14.79□□□□□ -0.04
TRIM28-215ENST00000601150 PIP5K1CO60331 668 aa14.79□□□□□ -0.04
TRIM28-215ENST00000601150 IFI30P13284 250 aa14.79□□□□□ -0.04
TRIM28-215ENST00000601150 IFNGR1P15260 489 aa14.79□□□□□ -0.04
TRIM28-215ENST00000601150 FUT4P22083 530 aa14.79□□□□□ -0.04
TRIM28-215ENST00000601150 HOXC12P31275 282 aa14.79□□□□□ -0.04
TRIM28-215ENST00000601150 SH3BGRP55822 239 aaPredicted RBP14.79□□□□□ -0.04
TRIM28-215ENST00000601150 NCMAPQ5T1S8 102 aa14.79□□□□□ -0.04
TRIM28-215ENST00000601150 CARD17Q5XLA6 110 aa14.79□□□□□ -0.04
TRIM28-215ENST00000601150 ZNF704Q6ZNC4 412 aaPredicted RBP14.79□□□□□ -0.04
TRIM28-215ENST00000601150 LINGO2Q7L985 606 aa14.79□□□□□ -0.04
TRIM28-215ENST00000601150 TSEN54Q7Z6J9 526 aaKnown RBP14.79□□□□□ -0.04
TRIM28-215ENST00000601150 C20orf196Q8IYI0 205 aa14.79□□□□□ -0.04
TRIM28-215ENST00000601150 WDR31Q8NA23 367 aa14.79□□□□□ -0.04
TRIM28-215ENST00000601150 OR1K1Q8NGR3 316 aa14.79□□□□□ -0.04
TRIM28-215ENST00000601150 ACOT11Q8WXI4 607 aaPredicted RBP14.79□□□□□ -0.04
TRIM28-215ENST00000601150 BPIFA2Q96DR5 249 aa14.79□□□□□ -0.04
TRIM28-215ENST00000601150 BOD1Q96IK1 185 aa14.79□□□□□ -0.04
TRIM28-215ENST00000601150 C7orf34Q96L11 122 aa14.79□□□□□ -0.04
TRIM28-215ENST00000601150 ADAD1Q96M93 576 aaKnown RBP14.79□□□□□ -0.04
TRIM28-215ENST00000601150 TMEM204Q9BSN7 226 aa14.79□□□□□ -0.04
TRIM28-215ENST00000601150 UBTD1Q9HAC8 227 aa14.79□□□□□ -0.04
TRIM28-215ENST00000601150 NMNAT1Q9HAN9 279 aaPredicted RBP14.79□□□□□ -0.04
TRIM28-215ENST00000601150 NDUFAF4Q9P032 175 aa14.79□□□□□ -0.04
TRIM28-215ENST00000601150 PLEKHA6Q9Y2H5 1048 aa14.79□□□□□ -0.04
TRIM28-215ENST00000601150 AMDHD2Q9Y303 409 aa14.79□□□□□ -0.04
TRIM28-215ENST00000601150 V9GYQ6 96 aa14.79□□□□□ -0.04
TRIM28-215ENST00000601150 A0A1W2PR80 420 aa14.78□□□□□ -0.04
TRIM28-215ENST00000601150 CD3EP07766 207 aa14.78□□□□□ -0.04
TRIM28-215ENST00000601150 ITGA2P17301 1181 aa14.78□□□□□ -0.04
TRIM28-215ENST00000601150 RHCEP18577 417 aa14.78□□□□□ -0.04
TRIM28-215ENST00000601150 IST1P53990 364 aa14.78□□□□□ -0.04
TRIM28-215ENST00000601150 BIDP55957 195 aa14.78□□□□□ -0.04
TRIM28-215ENST00000601150 VLDLRP98155 873 aa14.78□□□□□ -0.04
TRIM28-215ENST00000601150 KEAP1Q14145 624 aa14.78□□□□□ -0.04
TRIM28-215ENST00000601150 KLHL24Q6TFL4 600 aa14.78□□□□□ -0.04
TRIM28-215ENST00000601150 ZNF730Q6ZMV8 503 aa14.78□□□□□ -0.04
TRIM28-215ENST00000601150 SLC35D2Q76EJ3 337 aa14.78□□□□□ -0.04
TRIM28-215ENST00000601150 NRMQ8IXM6 262 aa14.78□□□□□ -0.04
TRIM28-215ENST00000601150 RNF113BQ8IZP6 322 aaKnown RBP14.78□□□□□ -0.04
TRIM28-215ENST00000601150 LRR1Q96L50 414 aa14.78□□□□□ -0.04
TRIM28-215ENST00000601150 C1orf21Q9H246 121 aa14.78□□□□□ -0.04
TRIM28-215ENST00000601150 GPR35Q9HC97 309 aa14.78□□□□□ -0.04
TRIM28-215ENST00000601150 B3GAT2Q9NPZ5 323 aa14.78□□□□□ -0.04
TRIM28-215ENST00000601150 NPAP1Q9NZP6 1156 aa14.78□□□□□ -0.04
TRIM28-215ENST00000601150 PRPF19Q9UMS4 504 aaKnown RBP14.78□□□□□ -0.04
TRIM28-215ENST00000601150 RNF115Q9Y4L5 304 aa14.78□□□□□ -0.04
TRIM28-215ENST00000601150 MYO9AB2RTY4 2548 aa14.78□□□□□ -0.04
TRIM28-215ENST00000601150 CSMD2Q7Z408 3487 aa14.77□□□□□ -0.04
TRIM28-215ENST00000601150 A0A087WUU8 490 aa14.77□□□□□ -0.05
TRIM28-215ENST00000601150 DPRXA6NFQ7 191 aa14.77□□□□□ -0.05
TRIM28-215ENST00000601150 hCG_2039718K7EN88 272 aa14.77□□□□□ -0.05
TRIM28-215ENST00000601150 M0R3G1 203 aa14.77□□□□□ -0.05
TRIM28-215ENST00000601150 ATE1O95260 518 aa14.77□□□□□ -0.05
TRIM28-215ENST00000601150 WNT11O96014 354 aa14.77□□□□□ -0.05
TRIM28-215ENST00000601150 PLAUP00749 431 aa14.77□□□□□ -0.05
TRIM28-215ENST00000601150 H1F0P07305 194 aaKnown RBP14.77□□□□□ -0.05
TRIM28-215ENST00000601150 ZNF83P51522 516 aa14.77□□□□□ -0.05
TRIM28-215ENST00000601150 PRPS1P60891 318 aa14.77□□□□□ -0.05
TRIM28-215ENST00000601150 LSM11P83369 360 aaKnown RBP eCLIP14.77□□□□□ -0.05
TRIM28-215ENST00000601150 PRKCDQ05655 676 aa14.77□□□□□ -0.05
TRIM28-215ENST00000601150 RPL18Q07020 188 aaKnown RBP14.77□□□□□ -0.05
TRIM28-215ENST00000601150 BSPH1Q075Z2 132 aa14.77□□□□□ -0.05
TRIM28-215ENST00000601150 CAMK2DQ13557 499 aa14.77□□□□□ -0.05
TRIM28-215ENST00000601150 ACKR1Q16570 336 aa14.77□□□□□ -0.05
TRIM28-215ENST00000601150 HIKESHIQ53FT3 197 aa14.77□□□□□ -0.05
TRIM28-215ENST00000601150 ANKRD16Q6P6B7 361 aa14.77□□□□□ -0.05
TRIM28-215ENST00000601150 KLHL17Q6TDP4 642 aa14.77□□□□□ -0.05
TRIM28-215ENST00000601150 MBOAT2Q6ZWT7 520 aa14.77□□□□□ -0.05
TRIM28-215ENST00000601150 RRM2BQ7LG56 351 aa14.77□□□□□ -0.05
TRIM28-215ENST00000601150 CDK20Q8IZL9 346 aa14.77□□□□□ -0.05
TRIM28-215ENST00000601150 OR6N1Q8NGY5 312 aa14.77□□□□□ -0.05
TRIM28-215ENST00000601150 OR6X1Q8NH79 312 aa14.77□□□□□ -0.05
TRIM28-215ENST00000601150 BCL2L2Q92843 193 aaPredicted RBP14.77□□□□□ -0.05
TRIM28-215ENST00000601150 MCUR1Q96AQ8 359 aa14.77□□□□□ -0.05
TRIM28-215ENST00000601150 MUC13Q9H3R2 512 aa14.77□□□□□ -0.05
TRIM28-215ENST00000601150 CRLF2Q9HC73 371 aa14.77□□□□□ -0.05
TRIM28-215ENST00000601150 OBP2BQ9NPH6 170 aa14.77□□□□□ -0.05
TRIM28-215ENST00000601150 CCM2LQ9NUG4 571 aaPredicted RBP14.77□□□□□ -0.05
TRIM28-215ENST00000601150 TAS2R1Q9NYW7 299 aa14.77□□□□□ -0.05
TRIM28-215ENST00000601150 ACTR3BQ9P1U1 418 aa14.77□□□□□ -0.05
TRIM28-215ENST00000601150 MAGED1Q9Y5V3 778 aaPredicted RBP14.77□□□□□ -0.05
TRIM28-215ENST00000601150 DSCAMO60469 2012 aa14.76□□□□□ -0.05
TRIM28-215ENST00000601150 CCDC168Q8NDH2 2452 aa14.76□□□□□ -0.05
TRIM28-215ENST00000601150 ALPK2Q86TB3 2170 aa14.76□□□□□ -0.05
TRIM28-215ENST00000601150 A0A1W2PRG6 482 aa14.76□□□□□ -0.05
TRIM28-215ENST00000601150 A0A1W2PRQ8 180 aa14.76□□□□□ -0.05
TRIM28-215ENST00000601150 CLOCKO15516 846 aa14.76□□□□□ -0.05
TRIM28-215ENST00000601150 SEMG1P04279 462 aa14.76□□□□□ -0.05
TRIM28-215ENST00000601150 TSPAN19P0C672 248 aa14.76□□□□□ -0.05
TRIM28-215ENST00000601150 SAGP10523 405 aaPredicted RBP14.76□□□□□ -0.05
TRIM28-215ENST00000601150 AQP2P41181 271 aa14.76□□□□□ -0.05
TRIM28-215ENST00000601150 ARF1P84077 181 aaKnown RBP14.76□□□□□ -0.05
Retrieved 100 of 20,778 RNA–protein pairs in 34.8 ms