RNA–Protein interactions for RNA: ENST00000600689.1

UPF1-210, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 2

Gene UPF1, Length 3,084 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-210ENST00000600689 OR2A4O95047 310 aa16.77■□□□□ 0.27
UPF1-210ENST00000600689 F12P00748 615 aaPredicted RBP16.77■□□□□ 0.27
UPF1-210ENST00000600689 CD3DP04234 171 aa16.77■□□□□ 0.27
UPF1-210ENST00000600689 DRD3P35462 400 aa16.77■□□□□ 0.27
UPF1-210ENST00000600689 GMFBP60983 142 aa16.77■□□□□ 0.27
UPF1-210ENST00000600689 RUNX2Q13950 521 aa16.77■□□□□ 0.27
UPF1-210ENST00000600689 TAF13Q15543 124 aa16.77■□□□□ 0.27
UPF1-210ENST00000600689 VITQ6UXI7 678 aa16.77■□□□□ 0.27
UPF1-210ENST00000600689 TEX19Q8NA77 164 aa16.77■□□□□ 0.27
UPF1-210ENST00000600689 OR5M9Q8NGP3 310 aa16.77■□□□□ 0.27
UPF1-210ENST00000600689 OR10Z1Q8NGY1 313 aa16.77■□□□□ 0.27
UPF1-210ENST00000600689 PNPLA2Q96AD5 504 aa16.77■□□□□ 0.27
UPF1-210ENST00000600689 OR2A7Q96R45 310 aa16.77■□□□□ 0.27
UPF1-210ENST00000600689 PBX4Q9BYU1 374 aa16.77■□□□□ 0.27
UPF1-210ENST00000600689 SLC39A1Q9NY26 324 aa16.77■□□□□ 0.27
UPF1-210ENST00000600689 ZNF281Q9Y2X9 895 aa16.77■□□□□ 0.27
UPF1-210ENST00000600689 MYO15AQ9UKN7 3530 aa16.77■□□□□ 0.27
UPF1-210ENST00000600689 LYPD3O95274 346 aa16.76■□□□□ 0.27
UPF1-210ENST00000600689 DBIP07108 87 aaKnown RBP16.76■□□□□ 0.27
UPF1-210ENST00000600689 APEHP13798 732 aaKnown RBP16.76■□□□□ 0.27
UPF1-210ENST00000600689 FCARP24071 287 aa16.76■□□□□ 0.27
UPF1-210ENST00000600689 MST1P26927 711 aa16.76■□□□□ 0.27
UPF1-210ENST00000600689 GJA4P35212 333 aa16.76■□□□□ 0.27
UPF1-210ENST00000600689 ACTA2P62736 377 aa16.76■□□□□ 0.27
UPF1-210ENST00000600689 ACTG2P63267 376 aa16.76■□□□□ 0.27
UPF1-210ENST00000600689 PLAURQ03405 335 aa16.76■□□□□ 0.27
UPF1-210ENST00000600689 TMPRSS11FQ6ZWK6 438 aa16.76■□□□□ 0.27
UPF1-210ENST00000600689 ZNF765Q7L2R6 523 aa16.76■□□□□ 0.27
UPF1-210ENST00000600689 ZNF546Q86UE3 836 aa16.76■□□□□ 0.27
UPF1-210ENST00000600689 CLRN3Q8NCR9 226 aa16.76■□□□□ 0.27
UPF1-210ENST00000600689 WDR13Q9H1Z4 485 aa16.76■□□□□ 0.27
UPF1-210ENST00000600689 MLXQ9UH92 298 aa16.76■□□□□ 0.27
UPF1-210ENST00000600689 FARSAQ9Y285 508 aaKnown RBP16.76■□□□□ 0.27
UPF1-210ENST00000600689 PTP4A3O75365 173 aa16.76■□□□□ 0.27
UPF1-210ENST00000600689 ITGA10O75578 1167 aa16.76■□□□□ 0.27
UPF1-210ENST00000600689 CDC123O75794 336 aaPredicted RBP16.76■□□□□ 0.27
UPF1-210ENST00000600689 TMEM52BQ4KMG9 183 aa16.76■□□□□ 0.27
UPF1-210ENST00000600689 ARHGAP11AQ6P4F7 1023 aa16.76■□□□□ 0.27
UPF1-210ENST00000600689 C10orf90Q96M02 699 aa16.76■□□□□ 0.27
UPF1-210ENST00000600689 PDCD10Q9BUL8 212 aa16.76■□□□□ 0.27
UPF1-210ENST00000600689 STARD5Q9NSY2 213 aa16.76■□□□□ 0.27
UPF1-210ENST00000600689 CPN1P15169 458 aa16.76■□□□□ 0.27
UPF1-210ENST00000600689 PBX2P40425 430 aa16.76■□□□□ 0.27
UPF1-210ENST00000600689 ELFN2Q5R3F8 820 aa16.76■□□□□ 0.27
UPF1-210ENST00000600689 ADAD1Q96M93 576 aaKnown RBP16.76■□□□□ 0.27
UPF1-210ENST00000600689 MRPS2Q9Y399 296 aaKnown RBP16.76■□□□□ 0.27
UPF1-210ENST00000600689 CT62P0C5K7 136 aa16.75■□□□□ 0.27
UPF1-210ENST00000600689 SCGB2B2Q4G0G5 96 aa16.75■□□□□ 0.27
UPF1-210ENST00000600689 SHEQ5VZ18 495 aa16.75■□□□□ 0.27
UPF1-210ENST00000600689 LEG1Q6P5S2 330 aa16.75■□□□□ 0.27
UPF1-210ENST00000600689 VN1R4Q7Z5H5 301 aa16.75■□□□□ 0.27
UPF1-210ENST00000600689 ZFP82Q8N141 532 aa16.75■□□□□ 0.27
UPF1-210ENST00000600689 C2CD4CQ8TF44 421 aa16.75■□□□□ 0.27
UPF1-210ENST00000600689 ZNF764Q96H86 408 aaPredicted RBP16.75■□□□□ 0.27
UPF1-210ENST00000600689 LCORQ96JN0 433 aaPredicted RBP16.75■□□□□ 0.27
UPF1-210ENST00000600689 KLHDC2Q9Y2U9 406 aa16.75■□□□□ 0.27
UPF1-210ENST00000600689 TUBAL3A6NHL2 446 aa16.75■□□□□ 0.27
UPF1-210ENST00000600689 P2RX6O15547 441 aa16.75■□□□□ 0.27
UPF1-210ENST00000600689 RBMS2Q15434 407 aaKnown RBP16.75■□□□□ 0.27
UPF1-210ENST00000600689 AKIRIN2Q53H80 203 aa16.75■□□□□ 0.27
UPF1-210ENST00000600689 PDSS1Q5T2R2 415 aa16.75■□□□□ 0.27
UPF1-210ENST00000600689 CBLN2Q8IUK8 224 aa16.75■□□□□ 0.27
UPF1-210ENST00000600689 RNF113BQ8IZP6 322 aaKnown RBP16.75■□□□□ 0.27
UPF1-210ENST00000600689 TMEM52Q8NDY8 209 aa16.75■□□□□ 0.27
UPF1-210ENST00000600689 ATOH1Q92858 354 aaPredicted RBP16.75■□□□□ 0.27
UPF1-210ENST00000600689 HAVCR1Q96D42 359 aa16.75■□□□□ 0.27
UPF1-210ENST00000600689 COX14Q96I36 57 aa16.75■□□□□ 0.27
UPF1-210ENST00000600689 SLITRK2Q9H156 845 aa16.75■□□□□ 0.27
UPF1-210ENST00000600689 EMC3Q9P0I2 261 aa16.75■□□□□ 0.27
UPF1-210ENST00000600689 ERVK-19Q9WJR5 959 aa16.75■□□□□ 0.27
UPF1-210ENST00000600689 PRAMEF2O60811 474 aa16.74■□□□□ 0.27
UPF1-210ENST00000600689 KAT7O95251 611 aa16.74■□□□□ 0.27
UPF1-210ENST00000600689 SPI1P17947 270 aa16.74■□□□□ 0.27
UPF1-210ENST00000600689 CENPAP49450 140 aa16.74■□□□□ 0.27
UPF1-210ENST00000600689 LBX1P52954 281 aa16.74■□□□□ 0.27
UPF1-210ENST00000600689 ZNF761Q86XN6 746 aaPredicted RBP16.74■□□□□ 0.27
UPF1-210ENST00000600689 ZNF676Q8N7Q3 588 aa16.74■□□□□ 0.27
UPF1-210ENST00000600689 LCN9Q8WX39 176 aa16.74■□□□□ 0.27
UPF1-210ENST00000600689 NKX6-2Q9C056 277 aaPredicted RBP16.74■□□□□ 0.27
UPF1-210ENST00000600689 ZNF350Q9GZX5 532 aa16.74■□□□□ 0.27
UPF1-210ENST00000600689 C1QTNF3-AMACRE9PGA6 284 aa16.74■□□□□ 0.27
UPF1-210ENST00000600689 FGF17O60258 216 aa16.74■□□□□ 0.27
UPF1-210ENST00000600689 RAB3AP20336 220 aa16.74■□□□□ 0.27
UPF1-210ENST00000600689 CMPK1P30085 196 aa16.74■□□□□ 0.27
UPF1-210ENST00000600689 EPHA4P54764 986 aa16.74■□□□□ 0.27
UPF1-210ENST00000600689 FAM53BQ14153 422 aa16.74■□□□□ 0.27
UPF1-210ENST00000600689 PDGFRLQ15198 375 aa16.74■□□□□ 0.27
UPF1-210ENST00000600689 PRRT3Q5FWE3 981 aa16.74■□□□□ 0.27
UPF1-210ENST00000600689 LIPNQ5VXI9 398 aa16.74■□□□□ 0.27
UPF1-210ENST00000600689 UNQ6126/PRO20091Q6UXV3 157 aa16.74■□□□□ 0.27
UPF1-210ENST00000600689 DND1Q8IYX4 353 aaKnown RBP16.74■□□□□ 0.27
UPF1-210ENST00000600689 OR2L13Q8N349 312 aa16.74■□□□□ 0.27
UPF1-210ENST00000600689 KXD1Q9BQD3 176 aa16.74■□□□□ 0.27
UPF1-210ENST00000600689 POFUT1Q9H488 388 aa16.74■□□□□ 0.27
UPF1-210ENST00000600689 ATG2AQ2TAZ0 1938 aa16.74■□□□□ 0.27
UPF1-210ENST00000600689 DISC1C4P0D8 188 aa16.73■□□□□ 0.27
UPF1-210ENST00000600689 RNGTTO60942 597 aaKnown RBP16.73■□□□□ 0.27
UPF1-210ENST00000600689 HPP00738 406 aa16.73■□□□□ 0.27
UPF1-210ENST00000600689 CCR4P51679 360 aa16.73■□□□□ 0.27
UPF1-210ENST00000600689 RUNX3Q13761 415 aa16.73■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 38.7 ms