RNA–Protein interactions for RNA: ENST00000599848.5

UPF1-207, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 1 (best) BASIC

Gene UPF1, Length 5,311 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-207ENST00000599848 EMG1Q92979 244 aaKnown RBP18.89■□□□□ 0.61
UPF1-207ENST00000599848 SULT1C2O00338 296 aa18.88■□□□□ 0.61
UPF1-207ENST00000599848 TPT1P13693 172 aaKnown RBP18.88■□□□□ 0.61
UPF1-207ENST00000599848 SUMO3P55854 103 aaPredicted RBP18.88■□□□□ 0.61
UPF1-207ENST00000599848 MCCD1P59942 119 aaPredicted RBP18.88■□□□□ 0.61
UPF1-207ENST00000599848 HNF4GQ14541 408 aa18.88■□□□□ 0.61
UPF1-207ENST00000599848 COX15Q7KZN9 410 aa18.88■□□□□ 0.61
UPF1-207ENST00000599848 HRASLS5Q96KN8 279 aa18.88■□□□□ 0.61
UPF1-207ENST00000599848 CCDC74BQ96LY2 380 aa18.88■□□□□ 0.61
UPF1-207ENST00000599848 LMO7DNF2Z398 122 aa18.88■□□□□ 0.61
UPF1-207ENST00000599848 PSMB10P40306 273 aa18.88■□□□□ 0.61
UPF1-207ENST00000599848 LTBQ06643 244 aa18.88■□□□□ 0.61
UPF1-207ENST00000599848 OR52W1Q6IF63 320 aa18.88■□□□□ 0.61
UPF1-207ENST00000599848 MFSD12Q6NUT3 480 aa18.88■□□□□ 0.61
UPF1-207ENST00000599848 LYPD8Q6UX82 237 aa18.88■□□□□ 0.61
UPF1-207ENST00000599848 FBXW5Q969U6 566 aa18.88■□□□□ 0.61
UPF1-207ENST00000599848 E9PI62 339 aa18.88■□□□□ 0.61
UPF1-207ENST00000599848 DEGS1O15121 323 aa18.88■□□□□ 0.61
UPF1-207ENST00000599848 TNFRSF1AP19438 455 aa18.88■□□□□ 0.61
UPF1-207ENST00000599848 IDH3GP51553 393 aaPredicted RBP18.88■□□□□ 0.61
UPF1-207ENST00000599848 USF2Q15853 346 aaPredicted RBP18.88■□□□□ 0.61
UPF1-207ENST00000599848 DOK3Q7L591 496 aa18.88■□□□□ 0.61
UPF1-207ENST00000599848 ADGRG5Q8IZF4 528 aa18.88■□□□□ 0.61
UPF1-207ENST00000599848 NEURL3Q96EH8 262 aa18.88■□□□□ 0.61
UPF1-207ENST00000599848 ZNF696Q9H7X3 374 aa18.88■□□□□ 0.61
UPF1-207ENST00000599848 PLEKHF2Q9H8W4 249 aa18.88■□□□□ 0.61
UPF1-207ENST00000599848 C1orf123Q9NWV4 160 aa18.88■□□□□ 0.61
UPF1-207ENST00000599848 GPR45Q9Y5Y3 372 aa18.88■□□□□ 0.61
UPF1-207ENST00000599848 VEGFCP49767 419 aa18.88■□□□□ 0.61
UPF1-207ENST00000599848 LIM2P55344 173 aa18.88■□□□□ 0.61
UPF1-207ENST00000599848 LTC4SQ16873 150 aa18.88■□□□□ 0.61
UPF1-207ENST00000599848 TMEM236Q5W0B7 351 aa18.88■□□□□ 0.61
UPF1-207ENST00000599848 CREB3L2Q70SY1 520 aa18.88■□□□□ 0.61
UPF1-207ENST00000599848 B3GNT7Q8NFL0 401 aa18.88■□□□□ 0.61
UPF1-207ENST00000599848 MRGPRX1Q96LB2 322 aa18.88■□□□□ 0.61
UPF1-207ENST00000599848 CHST11Q9NPF2 352 aa18.88■□□□□ 0.61
UPF1-207ENST00000599848 GPATCH2Q9NW75 528 aa18.88■□□□□ 0.61
UPF1-207ENST00000599848 LRIT2A6NDA9 550 aa18.87■□□□□ 0.61
UPF1-207ENST00000599848 OR5H15A6NDH6 313 aa18.87■□□□□ 0.61
UPF1-207ENST00000599848 OR5H14A6NHG9 310 aa18.87■□□□□ 0.61
UPF1-207ENST00000599848 OR5H1A6NKK0 313 aa18.87■□□□□ 0.61
UPF1-207ENST00000599848 ARHGAP33O14559 1287 aa18.87■□□□□ 0.61
UPF1-207ENST00000599848 TPPPO94811 219 aa18.87■□□□□ 0.61
UPF1-207ENST00000599848 GPX3P22352 226 aa18.87■□□□□ 0.61
UPF1-207ENST00000599848 PPICP45877 212 aa18.87■□□□□ 0.61
UPF1-207ENST00000599848 RNLSQ5VYX0 342 aa18.87■□□□□ 0.61
UPF1-207ENST00000599848 OR5T1Q8NG75 326 aa18.87■□□□□ 0.61
UPF1-207ENST00000599848 TTC9Q92623 222 aa18.87■□□□□ 0.61
UPF1-207ENST00000599848 ZBTB8AQ96BR9 441 aa18.87■□□□□ 0.61
UPF1-207ENST00000599848 LRFN5Q96NI6 719 aa18.87■□□□□ 0.61
UPF1-207ENST00000599848 MFRPQ9BY79 579 aa18.87■□□□□ 0.61
UPF1-207ENST00000599848 DOT1LQ8TEK3 1739 aa18.87■□□□□ 0.61
UPF1-207ENST00000599848 CSN1S1P47710 185 aa18.87■□□□□ 0.61
UPF1-207ENST00000599848 RPL11P62913 178 aaKnown RBP18.87■□□□□ 0.61
UPF1-207ENST00000599848 BAHD1Q8TBE0 780 aaPredicted RBP18.87■□□□□ 0.61
UPF1-207ENST00000599848 A0A1B0GWA3 101 aa18.87■□□□□ 0.61
UPF1-207ENST00000599848 SLC22A20A6NK97 555 aa18.87■□□□□ 0.61
UPF1-207ENST00000599848 XRCC2O43543 280 aa18.87■□□□□ 0.61
UPF1-207ENST00000599848 TNFRSF1BP20333 461 aa18.87■□□□□ 0.61
UPF1-207ENST00000599848 WNT7BP56706 349 aa18.87■□□□□ 0.61
UPF1-207ENST00000599848 SEMA6DQ8NFY4 1073 aa18.87■□□□□ 0.61
UPF1-207ENST00000599848 ABHD4Q8TB40 342 aa18.87■□□□□ 0.61
UPF1-207ENST00000599848 S1PR3Q99500 378 aa18.87■□□□□ 0.61
UPF1-207ENST00000599848 BCO1Q9HAY6 547 aa18.87■□□□□ 0.61
UPF1-207ENST00000599848 CACNG2Q9Y698 323 aa18.87■□□□□ 0.61
UPF1-207ENST00000599848 BET1O15155 118 aa18.87■□□□□ 0.61
UPF1-207ENST00000599848 LYRM1O43325 122 aa18.87■□□□□ 0.61
UPF1-207ENST00000599848 SSX4O60224 188 aa18.87■□□□□ 0.61
UPF1-207ENST00000599848 CLIC3O95833 236 aa18.87■□□□□ 0.61
UPF1-207ENST00000599848 SRP14P37108 136 aaKnown RBP18.87■□□□□ 0.61
UPF1-207ENST00000599848 HBA1P69905 142 aa18.87■□□□□ 0.61
UPF1-207ENST00000599848 MLLT11Q13015 90 aaPredicted RBP18.87■□□□□ 0.61
UPF1-207ENST00000599848 KISS1RQ969F8 398 aaPredicted RBP18.87■□□□□ 0.61
UPF1-207ENST00000599848 NT5C3BQ969T7 300 aa18.87■□□□□ 0.61
UPF1-207ENST00000599848 LANCL2Q9NS86 450 aa18.87■□□□□ 0.61
UPF1-207ENST00000599848 HBE1P02100 147 aa18.87■□□□□ 0.61
UPF1-207ENST00000599848 AQP2P41181 271 aa18.87■□□□□ 0.61
UPF1-207ENST00000599848 NAXDQ8IW45 347 aa18.87■□□□□ 0.61
UPF1-207ENST00000599848 CARFQ8N187 725 aa18.87■□□□□ 0.61
UPF1-207ENST00000599848 OR4D6Q8NGJ1 314 aa18.87■□□□□ 0.61
UPF1-207ENST00000599848 ZNF775Q96BV0 537 aaPredicted RBP18.87■□□□□ 0.61
UPF1-207ENST00000599848 RIMS4Q9H426 269 aaPredicted RBP18.87■□□□□ 0.61
UPF1-207ENST00000599848 GNB4Q9HAV0 340 aa18.87■□□□□ 0.61
UPF1-207ENST00000599848 SLC39A9Q9NUM3 307 aa18.87■□□□□ 0.61
UPF1-207ENST00000599848 FURINP09958 794 aa18.86■□□□□ 0.61
UPF1-207ENST00000599848 HTR2CP28335 458 aa18.86■□□□□ 0.61
UPF1-207ENST00000599848 FAM53BQ14153 422 aa18.86■□□□□ 0.61
UPF1-207ENST00000599848 RTL8BQ17RB0 113 aa18.86■□□□□ 0.61
UPF1-207ENST00000599848 LRRC28Q86X40 367 aaPredicted RBP18.86■□□□□ 0.61
UPF1-207ENST00000599848 RBMXL1Q96E39 390 aaKnown RBP18.86■□□□□ 0.61
UPF1-207ENST00000599848 TRMT61AQ96FX7 289 aaKnown RBP18.86■□□□□ 0.61
UPF1-207ENST00000599848 ZBTB42B2RXF5 422 aa18.86■□□□□ 0.61
UPF1-207ENST00000599848 PTTG1O95997 202 aa18.86■□□□□ 0.61
UPF1-207ENST00000599848 ZNF728P0DKX0 622 aa18.86■□□□□ 0.61
UPF1-207ENST00000599848 CLDN6P56747 220 aa18.86■□□□□ 0.61
UPF1-207ENST00000599848 IL11RAQ14626 422 aa18.86■□□□□ 0.61
UPF1-207ENST00000599848 HLA-BQ31612 363 aa18.86■□□□□ 0.61
UPF1-207ENST00000599848 PAGE3Q5JUK9 113 aa18.86■□□□□ 0.61
UPF1-207ENST00000599848 UBE2NLQ5JXB2 153 aa18.86■□□□□ 0.61
UPF1-207ENST00000599848 PAQR9Q6ZVX9 377 aa18.86■□□□□ 0.61
Retrieved 100 of 20,778 RNA–protein pairs in 33.8 ms