RNA–Protein interactions for RNA: ENST00000597172.5

TRIM28-208, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 577 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-208ENST00000597172 SMPD3Q9NY59 655 aaPredicted RBP8.42□□□□□ -1.06
TRIM28-208ENST00000597172 MRPL39Q9NYK5 338 aaKnown RBP8.42□□□□□ -1.06
TRIM28-208ENST00000597172 IL20RAQ9UHF4 553 aa8.42□□□□□ -1.06
TRIM28-208ENST00000597172 FREM3P0C091 2139 aa8.41□□□□□ -1.06
TRIM28-208ENST00000597172 CHD3Q12873 2000 aaKnown RBP8.41□□□□□ -1.06
TRIM28-208ENST00000597172 A0A1B0GTH9 108 aa8.41□□□□□ -1.06
TRIM28-208ENST00000597172 BLOC1S5-TXNDC5H3BN57 136 aa8.41□□□□□ -1.06
TRIM28-208ENST00000597172 SLC16A6O15403 523 aa8.41□□□□□ -1.06
TRIM28-208ENST00000597172 SEC14L5O43304 696 aa8.41□□□□□ -1.06
TRIM28-208ENST00000597172 CXCL13O43927 109 aa8.41□□□□□ -1.06
TRIM28-208ENST00000597172 RAMP1O60894 148 aa8.41□□□□□ -1.06
TRIM28-208ENST00000597172 HIST1H2ABP04908 130 aa8.41□□□□□ -1.06
TRIM28-208ENST00000597172 IGFBP2P18065 325 aa8.41□□□□□ -1.06
TRIM28-208ENST00000597172 ENPP1P22413 925 aa8.41□□□□□ -1.06
TRIM28-208ENST00000597172 POU1F1P28069 291 aa8.41□□□□□ -1.06
TRIM28-208ENST00000597172 GIPRP48546 466 aa8.41□□□□□ -1.06
TRIM28-208ENST00000597172 CARD18P57730 90 aa8.41□□□□□ -1.06
TRIM28-208ENST00000597172 RAC3P60763 192 aa8.41□□□□□ -1.06
TRIM28-208ENST00000597172 ESRRGP62508 458 aa8.41□□□□□ -1.06
TRIM28-208ENST00000597172 SLC35A1P78382 337 aa8.41□□□□□ -1.06
TRIM28-208ENST00000597172 CDK5Q00535 292 aa8.41□□□□□ -1.06
TRIM28-208ENST00000597172 SRYQ05066 204 aa8.41□□□□□ -1.06
TRIM28-208ENST00000597172 RPL18Q07020 188 aaKnown RBP8.41□□□□□ -1.06
TRIM28-208ENST00000597172 ZP4Q12836 540 aa8.41□□□□□ -1.06
TRIM28-208ENST00000597172 PMS2P3Q13401 168 aa8.41□□□□□ -1.06
TRIM28-208ENST00000597172 MFSD13AQ14CX5 517 aa8.41□□□□□ -1.06
TRIM28-208ENST00000597172 PTGES3Q15185 160 aaKnown RBP8.41□□□□□ -1.06
TRIM28-208ENST00000597172 SGCBQ16585 318 aa8.41□□□□□ -1.06
TRIM28-208ENST00000597172 ZNF239Q16600 458 aaKnown RBP8.41□□□□□ -1.06
TRIM28-208ENST00000597172 KRTCAP3Q53RY4 240 aa8.41□□□□□ -1.06
TRIM28-208ENST00000597172 C6orf52Q5T4I8 152 aa8.41□□□□□ -1.06
TRIM28-208ENST00000597172 TMEM236Q5W0B7 351 aa8.41□□□□□ -1.06
TRIM28-208ENST00000597172 HBMQ6B0K9 141 aa8.41□□□□□ -1.06
TRIM28-208ENST00000597172 ACSM5Q6NUN0 579 aa8.41□□□□□ -1.06
TRIM28-208ENST00000597172 SMARCD3Q6STE5 483 aa8.41□□□□□ -1.06
TRIM28-208ENST00000597172 HIST3H2AQ7L7L0 130 aa8.41□□□□□ -1.06
TRIM28-208ENST00000597172 CCDC103Q8IW40 242 aa8.41□□□□□ -1.06
TRIM28-208ENST00000597172 UBQLNLQ8IYU4 475 aa8.41□□□□□ -1.06
TRIM28-208ENST00000597172 KDM8Q8N371 416 aa8.41□□□□□ -1.06
TRIM28-208ENST00000597172 CLDN22Q8N7P3 220 aa8.41□□□□□ -1.06
TRIM28-208ENST00000597172 SCAIQ8N9R8 606 aa8.41□□□□□ -1.06
TRIM28-208ENST00000597172 OR10D3Q8NH80 312 aa8.41□□□□□ -1.06
TRIM28-208ENST00000597172 CA5BP1Q8WTZ4 195 aa8.41□□□□□ -1.06
TRIM28-208ENST00000597172 TFAP2CQ92754 450 aa8.41□□□□□ -1.06
TRIM28-208ENST00000597172 HIST1H2ACQ93077 130 aa8.41□□□□□ -1.06
TRIM28-208ENST00000597172 MBD6Q96DN6 1003 aa8.41□□□□□ -1.06
TRIM28-208ENST00000597172 ZNF845Q96IR2 970 aaPredicted RBP8.41□□□□□ -1.06
TRIM28-208ENST00000597172 RDH12Q96NR8 316 aa8.41□□□□□ -1.06
TRIM28-208ENST00000597172 UCN2Q96RP3 112 aa8.41□□□□□ -1.06
TRIM28-208ENST00000597172 TAPBPLQ9BX59 468 aa8.41□□□□□ -1.06
TRIM28-208ENST00000597172 TSSK6Q9BXA6 273 aa8.41□□□□□ -1.06
TRIM28-208ENST00000597172 VCXQ9H320 206 aa8.41□□□□□ -1.06
TRIM28-208ENST00000597172 OR52D1Q9H346 318 aa8.41□□□□□ -1.06
TRIM28-208ENST00000597172 RIBC2Q9H4K1 309 aa8.41□□□□□ -1.06
TRIM28-208ENST00000597172 EXO5Q9H790 373 aa8.41□□□□□ -1.06
TRIM28-208ENST00000597172 ALKBH4Q9NXW9 302 aa8.41□□□□□ -1.06
TRIM28-208ENST00000597172 KCNN3Q9UGI6 736 aa8.41□□□□□ -1.06
TRIM28-208ENST00000597172 TINAGQ9UJW2 476 aa8.41□□□□□ -1.06
TRIM28-208ENST00000597172 HIF3AQ9Y2N7 669 aa8.41□□□□□ -1.06
TRIM28-208ENST00000597172 CORINQ9Y5Q5 1042 aa8.41□□□□□ -1.06
TRIM28-208ENST00000597172 CDH10Q9Y6N8 788 aa8.41□□□□□ -1.06
TRIM28-208ENST00000597172 MED12Q93074 2177 aa8.41□□□□□ -1.06
TRIM28-208ENST00000597172 MEGF8Q7Z7M0 2845 aa8.4□□□□□ -1.06
TRIM28-208ENST00000597172 IGHV3-15A0A0B4J1V0 119 aa8.4□□□□□ -1.06
TRIM28-208ENST00000597172 LOC100130705A0A1B0GUX0 176 aa8.4□□□□□ -1.06
TRIM28-208ENST00000597172 ZAR1LA6NP61 321 aa8.4□□□□□ -1.06
TRIM28-208ENST00000597172 MCIDASD6RGH6 385 aa8.4□□□□□ -1.06
TRIM28-208ENST00000597172 NPIPA2E9PIF3 369 aa8.4□□□□□ -1.06
TRIM28-208ENST00000597172 NPIPA3F8WFD2 350 aa8.4□□□□□ -1.06
TRIM28-208ENST00000597172 H3BN98 237 aa8.4□□□□□ -1.06
TRIM28-208ENST00000597172 BHLHE40O14503 412 aa8.4□□□□□ -1.06
TRIM28-208ENST00000597172 SLC19A2O60779 497 aa8.4□□□□□ -1.06
TRIM28-208ENST00000597172 NDUFB2O95178 105 aa8.4□□□□□ -1.06
TRIM28-208ENST00000597172 RCBTB2O95199 551 aa8.4□□□□□ -1.06
TRIM28-208ENST00000597172 ADORA3P0DMS8 318 aa8.4□□□□□ -1.06
TRIM28-208ENST00000597172 EIF1AXP47813 144 aaKnown RBP8.4□□□□□ -1.06
TRIM28-208ENST00000597172 CSNK2A1P68400 391 aaPredicted RBP8.4□□□□□ -1.06
TRIM28-208ENST00000597172 RUNX1T1Q06455 604 aa8.4□□□□□ -1.06
TRIM28-208ENST00000597172 GINS1Q14691 196 aa8.4□□□□□ -1.06
TRIM28-208ENST00000597172 ANKDD1AQ495B1 522 aa8.4□□□□□ -1.06
TRIM28-208ENST00000597172 PAQR6Q6TCH4 344 aa8.4□□□□□ -1.06
TRIM28-208ENST00000597172 PLXDC2Q6UX71 529 aa8.4□□□□□ -1.06
TRIM28-208ENST00000597172 IGFN1Q86VF2 1251 aa8.4□□□□□ -1.06
TRIM28-208ENST00000597172 CCDC71Q8IV32 467 aaPredicted RBP8.4□□□□□ -1.06
TRIM28-208ENST00000597172 DHRSXQ8N5I4 330 aa8.4□□□□□ -1.06
TRIM28-208ENST00000597172 MEIOBQ8N635 442 aa8.4□□□□□ -1.06
TRIM28-208ENST00000597172 IQCF1Q8N6M8 205 aa8.4□□□□□ -1.06
TRIM28-208ENST00000597172 OR4Q3Q8NH05 313 aa8.4□□□□□ -1.06
TRIM28-208ENST00000597172 ROBO4Q8WZ75 1007 aa8.4□□□□□ -1.06
TRIM28-208ENST00000597172 HRASLS5Q96KN8 279 aa8.4□□□□□ -1.06
TRIM28-208ENST00000597172 ZNF184Q99676 751 aaPredicted RBP8.4□□□□□ -1.06
TRIM28-208ENST00000597172 ADI1Q9BV57 179 aa8.4□□□□□ -1.06
TRIM28-208ENST00000597172 ASPNQ9BXN1 380 aa8.4□□□□□ -1.06
TRIM28-208ENST00000597172 PRDM14Q9GZV8 571 aa8.4□□□□□ -1.06
TRIM28-208ENST00000597172 FANCFQ9NPI8 374 aa8.4□□□□□ -1.06
TRIM28-208ENST00000597172 B3GAT1Q9P2W7 334 aa8.4□□□□□ -1.06
TRIM28-208ENST00000597172 NDRG4Q9ULP0 352 aaKnown RBP8.4□□□□□ -1.06
TRIM28-208ENST00000597172 B3GALT5Q9Y2C3 310 aa8.4□□□□□ -1.06
TRIM28-208ENST00000597172 LRRC42Q9Y546 428 aa8.4□□□□□ -1.06
TRIM28-208ENST00000597172 ORC6Q9Y5N6 252 aa8.4□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 31.7 ms