RNA–Protein interactions for RNA: ENST00000596842.5

UPF1-204, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 2

Gene UPF1, Length 3,825 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-204ENST00000596842 ZMAT3Q9HA38 289 aaKnown RBP13.97□□□□□ -0.17
UPF1-204ENST00000596842 SLC39A1Q9NY26 324 aa13.97□□□□□ -0.17
UPF1-204ENST00000596842 FBXL2Q9UKC9 423 aa13.97□□□□□ -0.17
UPF1-204ENST00000596842 C11orf98E9PRG8 122 aa13.97□□□□□ -0.17
UPF1-204ENST00000596842 CREBL2O60519 120 aaPredicted RBP13.97□□□□□ -0.17
UPF1-204ENST00000596842 CBX7O95931 251 aa13.97□□□□□ -0.17
UPF1-204ENST00000596842 SPI1P17947 270 aa13.97□□□□□ -0.17
UPF1-204ENST00000596842 GUCA2AQ02747 115 aa13.97□□□□□ -0.17
UPF1-204ENST00000596842 PLAURQ03405 335 aa13.97□□□□□ -0.17
UPF1-204ENST00000596842 GAS6Q14393 721 aa13.97□□□□□ -0.17
UPF1-204ENST00000596842 TUSC1Q2TAM9 212 aa13.97□□□□□ -0.17
UPF1-204ENST00000596842 C3P1Q6ZMU1 363 aa13.97□□□□□ -0.17
UPF1-204ENST00000596842 OR5M1Q8NGP8 315 aa13.97□□□□□ -0.17
UPF1-204ENST00000596842 OR10AC1Q8NH08 325 aa13.97□□□□□ -0.17
UPF1-204ENST00000596842 SLC22A18Q96BI1 424 aa13.97□□□□□ -0.17
UPF1-204ENST00000596842 CXorf58Q96LI9 332 aa13.97□□□□□ -0.17
UPF1-204ENST00000596842 RSPH9Q9H1X1 276 aaPredicted RBP13.97□□□□□ -0.17
UPF1-204ENST00000596842 HEBP2Q9Y5Z4 205 aa13.97□□□□□ -0.17
UPF1-204ENST00000596842 SPDEFO95238 335 aa13.96□□□□□ -0.17
UPF1-204ENST00000596842 ADH1BP00325 375 aa13.96□□□□□ -0.17
UPF1-204ENST00000596842 CAPZA1P52907 286 aa13.96□□□□□ -0.17
UPF1-204ENST00000596842 ADPRHP54922 357 aa13.96□□□□□ -0.17
UPF1-204ENST00000596842 FGL1Q08830 312 aa13.96□□□□□ -0.17
UPF1-204ENST00000596842 C4orf46Q504U0 113 aa13.96□□□□□ -0.17
UPF1-204ENST00000596842 RPL22L1Q6P5R6 122 aaKnown RBP13.96□□□□□ -0.17
UPF1-204ENST00000596842 CRB3Q9BUF7 120 aa13.96□□□□□ -0.17
UPF1-204ENST00000596842 TRPV4Q9HBA0 871 aa13.96□□□□□ -0.17
UPF1-204ENST00000596842 PTP4A3O75365 173 aa13.96□□□□□ -0.17
UPF1-204ENST00000596842 IGKV1D-16P01601 117 aa13.96□□□□□ -0.17
UPF1-204ENST00000596842 PVALBP20472 110 aaPredicted RBP13.96□□□□□ -0.17
UPF1-204ENST00000596842 GALP22466 123 aa13.96□□□□□ -0.17
UPF1-204ENST00000596842 LSSP48449 732 aa13.96□□□□□ -0.17
UPF1-204ENST00000596842 PTH2RP49190 550 aa13.96□□□□□ -0.17
UPF1-204ENST00000596842 ATXN7L3Q14CW9 347 aaPredicted RBP13.96□□□□□ -0.17
UPF1-204ENST00000596842 FAM198BQ6UWH4 519 aa13.96□□□□□ -0.17
UPF1-204ENST00000596842 TSEN15Q8WW01 171 aaKnown RBP13.96□□□□□ -0.17
UPF1-204ENST00000596842 ALG12Q9BV10 488 aa13.96□□□□□ -0.17
UPF1-204ENST00000596842 DUSP22Q9NRW4 184 aa13.96□□□□□ -0.17
UPF1-204ENST00000596842 PCDHGA5Q9Y5G8 931 aa13.96□□□□□ -0.17
UPF1-204ENST00000596842 SHOXO15266 292 aa13.96□□□□□ -0.18
UPF1-204ENST00000596842 ITGA10O75578 1167 aa13.96□□□□□ -0.18
UPF1-204ENST00000596842 RPS11P62280 158 aaKnown RBP eCLIP13.96□□□□□ -0.18
UPF1-204ENST00000596842 POLR2GP62487 172 aaKnown RBP eCLIP13.96□□□□□ -0.18
UPF1-204ENST00000596842 FCRL6Q6DN72 434 aa13.96□□□□□ -0.18
UPF1-204ENST00000596842 PHOSPHO1Q8TCT1 267 aa13.96□□□□□ -0.18
UPF1-204ENST00000596842 NKD1Q969G9 470 aa13.96□□□□□ -0.18
UPF1-204ENST00000596842 RXFP3Q9NSD7 469 aa13.96□□□□□ -0.18
UPF1-204ENST00000596842 ASH2LQ9UBL3 628 aa13.96□□□□□ -0.18
UPF1-204ENST00000596842 ELOA3DA6NLF2 546 aaPredicted RBP13.95□□□□□ -0.18
UPF1-204ENST00000596842 LINC01387J3KSC0 135 aa13.95□□□□□ -0.18
UPF1-204ENST00000596842 CA3P07451 260 aa13.95□□□□□ -0.18
UPF1-204ENST00000596842 HOXB2P14652 356 aa13.95□□□□□ -0.18
UPF1-204ENST00000596842 CTXN1P60606 82 aa13.95□□□□□ -0.18
UPF1-204ENST00000596842 PRICKLE4Q2TBC4 344 aa13.95□□□□□ -0.18
UPF1-204ENST00000596842 ELOA3BQ3SY89 546 aa13.95□□□□□ -0.18
UPF1-204ENST00000596842 LIPNQ5VXI9 398 aa13.95□□□□□ -0.18
UPF1-204ENST00000596842 MAMSTRQ6ZN01 415 aa13.95□□□□□ -0.18
UPF1-204ENST00000596842 LRRC69Q6ZNQ3 347 aa13.95□□□□□ -0.18
UPF1-204ENST00000596842 SLC35D2Q76EJ3 337 aa13.95□□□□□ -0.18
UPF1-204ENST00000596842 DPY19L4Q7Z388 723 aa13.95□□□□□ -0.18
UPF1-204ENST00000596842 STX12Q86Y82 276 aa13.95□□□□□ -0.18
UPF1-204ENST00000596842 PRR22Q8IZ63 422 aa13.95□□□□□ -0.18
UPF1-204ENST00000596842 ELOA3Q8NG57 546 aa13.95□□□□□ -0.18
UPF1-204ENST00000596842 OR51A4Q8NGJ6 313 aa13.95□□□□□ -0.18
UPF1-204ENST00000596842 TRIM2Q9C040 744 aa13.95□□□□□ -0.18
UPF1-204ENST00000596842 TAS2R3Q9NYW6 316 aa13.95□□□□□ -0.18
UPF1-204ENST00000596842 PRR32B1ATL7 298 aa13.95□□□□□ -0.18
UPF1-204ENST00000596842 GOSR2O14653 212 aa13.95□□□□□ -0.18
UPF1-204ENST00000596842 KHNYNO15037 678 aaKnown RBP13.95□□□□□ -0.18
UPF1-204ENST00000596842 ZNF254O75437 659 aa13.95□□□□□ -0.18
UPF1-204ENST00000596842 SLC2A5P22732 501 aa13.95□□□□□ -0.18
UPF1-204ENST00000596842 GRK6P43250 576 aa13.95□□□□□ -0.18
UPF1-204ENST00000596842 ART1P52961 327 aa13.95□□□□□ -0.18
UPF1-204ENST00000596842 AP3S2P59780 193 aa13.95□□□□□ -0.18
UPF1-204ENST00000596842 HTRA4P83105 476 aaPredicted RBP13.95□□□□□ -0.18
UPF1-204ENST00000596842 POU4F2Q12837 409 aa13.95□□□□□ -0.18
UPF1-204ENST00000596842 METTL11BQ5VVY1 283 aa13.95□□□□□ -0.18
UPF1-204ENST00000596842 CYB5R2Q6BCY4 276 aa13.95□□□□□ -0.18
UPF1-204ENST00000596842 PRSS58Q8IYP2 241 aa13.95□□□□□ -0.18
UPF1-204ENST00000596842 OR51D1Q8NGF3 324 aa13.95□□□□□ -0.18
UPF1-204ENST00000596842 NSMAFQ92636 917 aa13.95□□□□□ -0.18
UPF1-204ENST00000596842 SLC25A38Q96DW6 304 aa13.95□□□□□ -0.18
UPF1-204ENST00000596842 OR5V1Q9UGF6 321 aa13.95□□□□□ -0.18
UPF1-204ENST00000596842 ERVK-19Q9WJR5 959 aa13.95□□□□□ -0.18
UPF1-204ENST00000596842 ZNF281Q9Y2X9 895 aa13.95□□□□□ -0.18
UPF1-204ENST00000596842 UBE2QL1A1L167 161 aa13.95□□□□□ -0.18
UPF1-204ENST00000596842 LINC00862A6NCI5 91 aa13.95□□□□□ -0.18
UPF1-204ENST00000596842 PYCARD-AS1I3L0S3 204 aa13.95□□□□□ -0.18
UPF1-204ENST00000596842 LYPD3O95274 346 aa13.95□□□□□ -0.18
UPF1-204ENST00000596842 APOC1P02654 83 aa13.95□□□□□ -0.18
UPF1-204ENST00000596842 TSFMP43897 325 aaKnown RBP13.95□□□□□ -0.18
UPF1-204ENST00000596842 BTG2P78543 158 aa13.95□□□□□ -0.18
UPF1-204ENST00000596842 RCBTB1Q8NDN9 531 aa13.95□□□□□ -0.18
UPF1-204ENST00000596842 SLC25A36Q96CQ1 311 aa13.95□□□□□ -0.18
UPF1-204ENST00000596842 TCEAL2Q9H3H9 227 aaPredicted RBP13.95□□□□□ -0.18
UPF1-204ENST00000596842 SDHAF2Q9NX18 166 aa13.95□□□□□ -0.18
UPF1-204ENST00000596842 AKAP7Q9P0M2 348 aaPredicted RBP13.95□□□□□ -0.18
UPF1-204ENST00000596842 TRAV18A0A075B6X5 111 aa13.94□□□□□ -0.18
UPF1-204ENST00000596842 DISC1C4P0D8 188 aa13.94□□□□□ -0.18
UPF1-204ENST00000596842 ACSM4P0C7M7 580 aa13.94□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 43.3 ms