RNA–Protein interactions for RNA: ENST00000589753.1

ATG4D-211, Transcript of autophagy related 4D cysteine peptidase, humanhuman

TSL 1 (best)

Gene ATG4D, Length 931 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4D-211ENST00000589753 NRG4Q8WWG1 115 aa13.5□□□□□ -0.25
ATG4D-211ENST00000589753 ZNF775Q96BV0 537 aaPredicted RBP13.5□□□□□ -0.25
ATG4D-211ENST00000589753 ZNF385AQ96PM9 386 aaKnown RBP13.5□□□□□ -0.25
ATG4D-211ENST00000589753 KATNB1Q9BVA0 655 aa13.5□□□□□ -0.25
ATG4D-211ENST00000589753 IFT27Q9BW83 186 aa13.5□□□□□ -0.25
ATG4D-211ENST00000589753 TSSK6Q9BXA6 273 aa13.5□□□□□ -0.25
ATG4D-211ENST00000589753 POLDIP3Q9BY77 421 aaKnown RBP13.5□□□□□ -0.25
ATG4D-211ENST00000589753 VCXQ9H320 206 aa13.5□□□□□ -0.25
ATG4D-211ENST00000589753 NPIPB13A6NJU9 1138 aa13.49□□□□□ -0.25
ATG4D-211ENST00000589753 NPIPB4C9JG80 1138 aa13.49□□□□□ -0.25
ATG4D-211ENST00000589753 AKAP8O43823 692 aaKnown RBP13.49□□□□□ -0.25
ATG4D-211ENST00000589753 PPP1R3DO95685 299 aa13.49□□□□□ -0.25
ATG4D-211ENST00000589753 BCL10O95999 233 aa13.49□□□□□ -0.25
ATG4D-211ENST00000589753 IGHMP01871 453 aa13.49□□□□□ -0.25
ATG4D-211ENST00000589753 CRHP06850 196 aa13.49□□□□□ -0.25
ATG4D-211ENST00000589753 TMIGD3P0DMS9 266 aaPredicted RBP13.49□□□□□ -0.25
ATG4D-211ENST00000589753 AGTR1P30556 359 aa13.49□□□□□ -0.25
ATG4D-211ENST00000589753 DAP3P51398 398 aaKnown RBP13.49□□□□□ -0.25
ATG4D-211ENST00000589753 RPS6KA3P51812 740 aa13.49□□□□□ -0.25
ATG4D-211ENST00000589753 CRISP1P54107 249 aa13.49□□□□□ -0.25
ATG4D-211ENST00000589753 CLDN17P56750 224 aa13.49□□□□□ -0.25
ATG4D-211ENST00000589753 ERVK-25P63136 954 aa13.49□□□□□ -0.25
ATG4D-211ENST00000589753 TOP3AQ13472 1001 aaPredicted RBP13.49□□□□□ -0.25
ATG4D-211ENST00000589753 GUSBP1Q15486 140 aa13.49□□□□□ -0.25
ATG4D-211ENST00000589753 ACKR1Q16570 336 aa13.49□□□□□ -0.25
ATG4D-211ENST00000589753 NHLRC1Q6VVB1 395 aa13.49□□□□□ -0.25
ATG4D-211ENST00000589753 NCCRP1Q6ZVX7 275 aaPredicted RBP13.49□□□□□ -0.25
ATG4D-211ENST00000589753 FAM214BQ7L5A3 538 aa13.49□□□□□ -0.25
ATG4D-211ENST00000589753 FJX1Q86VR8 437 aa13.49□□□□□ -0.25
ATG4D-211ENST00000589753 TMEM45BQ96B21 275 aa13.49□□□□□ -0.25
ATG4D-211ENST00000589753 TXNDC15Q96J42 360 aa13.49□□□□□ -0.25
ATG4D-211ENST00000589753 GABARAPL3Q9BY60 117 aa13.49□□□□□ -0.25
ATG4D-211ENST00000589753 VCX3BQ9H321 246 aa13.49□□□□□ -0.25
ATG4D-211ENST00000589753 TXNIPQ9H3M7 391 aa13.49□□□□□ -0.25
ATG4D-211ENST00000589753 RIBC2Q9H4K1 309 aa13.49□□□□□ -0.25
ATG4D-211ENST00000589753 NRIP3Q9NQ35 241 aa13.49□□□□□ -0.25
ATG4D-211ENST00000589753 MED29Q9NX70 200 aa13.49□□□□□ -0.25
ATG4D-211ENST00000589753 NOSIPQ9Y314 301 aaKnown RBP13.49□□□□□ -0.25
ATG4D-211ENST00000589753 EMC9Q9Y3B6 208 aa13.49□□□□□ -0.25
ATG4D-211ENST00000589753 ARHGAP21Q5T5U3 1957 aa13.49□□□□□ -0.25
ATG4D-211ENST00000589753 HSPB2A8KAH6 182 aa13.48□□□□□ -0.25
ATG4D-211ENST00000589753 LRRTM2O43300 516 aa13.48□□□□□ -0.25
ATG4D-211ENST00000589753 APEHP13798 732 aaKnown RBP13.48□□□□□ -0.25
ATG4D-211ENST00000589753 PTDSS1P48651 473 aaKnown RBP13.48□□□□□ -0.25
ATG4D-211ENST00000589753 BIDP55957 195 aa13.48□□□□□ -0.25
ATG4D-211ENST00000589753 RPL27P61353 136 aaKnown RBP13.48□□□□□ -0.25
ATG4D-211ENST00000589753 SIRPAP78324 504 aa13.48□□□□□ -0.25
ATG4D-211ENST00000589753 FOXF2Q12947 444 aa13.48□□□□□ -0.25
ATG4D-211ENST00000589753 NPRL3Q12980 569 aa13.48□□□□□ -0.25
ATG4D-211ENST00000589753 MELKQ14680 651 aa13.48□□□□□ -0.25
ATG4D-211ENST00000589753 HSPB2Q16082 182 aa13.48□□□□□ -0.25
ATG4D-211ENST00000589753 C4orf17Q53FE4 359 aa13.48□□□□□ -0.25
ATG4D-211ENST00000589753 AAED1Q7RTV5 226 aa13.48□□□□□ -0.25
ATG4D-211ENST00000589753 CNEP1R1Q8N9A8 125 aa13.48□□□□□ -0.25
ATG4D-211ENST00000589753 NAXEQ8NCW5 288 aa13.48□□□□□ -0.25
ATG4D-211ENST00000589753 OR2T33Q8NG76 320 aa13.48□□□□□ -0.25
ATG4D-211ENST00000589753 RND1Q92730 232 aa13.48□□□□□ -0.25
ATG4D-211ENST00000589753 ADAD1Q96M93 576 aaKnown RBP13.48□□□□□ -0.25
ATG4D-211ENST00000589753 ZNF570Q96NI8 536 aa13.48□□□□□ -0.25
ATG4D-211ENST00000589753 ERMAPQ96PL5 475 aaPredicted RBP13.48□□□□□ -0.25
ATG4D-211ENST00000589753 TSPAN32Q96QS1 320 aa13.48□□□□□ -0.25
ATG4D-211ENST00000589753 PARPBPQ9NWS1 579 aa13.48□□□□□ -0.25
ATG4D-211ENST00000589753 SMPD3Q9NY59 655 aaPredicted RBP13.48□□□□□ -0.25
ATG4D-211ENST00000589753 GRHPRQ9UBQ7 328 aa13.48□□□□□ -0.25
ATG4D-211ENST00000589753 ZNF346Q9UL40 294 aaKnown RBP13.48□□□□□ -0.25
ATG4D-211ENST00000589753 BAIAP2Q9UQB8 552 aa13.48□□□□□ -0.25
ATG4D-211ENST00000589753 ADAM18Q9Y3Q7 739 aa13.48□□□□□ -0.25
ATG4D-211ENST00000589753 IER3IP1Q9Y5U9 82 aa13.48□□□□□ -0.25
ATG4D-211ENST00000589753 PRRC2CQ9Y520 2896 aaKnown RBP13.48□□□□□ -0.25
ATG4D-211ENST00000589753 ZFYVE26Q68DK2 2539 aa13.48□□□□□ -0.25
ATG4D-211ENST00000589753 KALRNO60229 2985 aa13.47□□□□□ -0.25
ATG4D-211ENST00000589753 A0A0G2JNJ9 132 aa13.47□□□□□ -0.25
ATG4D-211ENST00000589753 SLC35F4A4IF30 521 aa13.47□□□□□ -0.25
ATG4D-211ENST00000589753 ZNF726A6NNF4 738 aa13.47□□□□□ -0.25
ATG4D-211ENST00000589753 BHLHE40O14503 412 aa13.47□□□□□ -0.25
ATG4D-211ENST00000589753 IMPA2O14732 288 aa13.47□□□□□ -0.25
ATG4D-211ENST00000589753 ARPC3O15145 178 aa13.47□□□□□ -0.25
ATG4D-211ENST00000589753 MRPL33O75394 65 aaKnown RBP13.47□□□□□ -0.25
ATG4D-211ENST00000589753 SNAP29O95721 258 aa13.47□□□□□ -0.25
ATG4D-211ENST00000589753 CTSSP25774 331 aa13.47□□□□□ -0.25
ATG4D-211ENST00000589753 NOS3P29474 1203 aa13.47□□□□□ -0.25
ATG4D-211ENST00000589753 SDHAP31040 664 aa13.47□□□□□ -0.25
ATG4D-211ENST00000589753 KIR2DL2P43627 348 aaPredicted RBP13.47□□□□□ -0.25
ATG4D-211ENST00000589753 GIPRP48546 466 aa13.47□□□□□ -0.25
ATG4D-211ENST00000589753 CDK5Q00535 292 aa13.47□□□□□ -0.25
ATG4D-211ENST00000589753 GINS1Q14691 196 aa13.47□□□□□ -0.25
ATG4D-211ENST00000589753 PTGES3Q15185 160 aaKnown RBP13.47□□□□□ -0.25
ATG4D-211ENST00000589753 ZIK1Q3SY52 487 aaPredicted RBP13.47□□□□□ -0.25
ATG4D-211ENST00000589753 ARMC4Q5T2S8 1044 aa13.47□□□□□ -0.25
ATG4D-211ENST00000589753 FAM205BPQ63HN1 556 aa13.47□□□□□ -0.25
ATG4D-211ENST00000589753 GPR139Q6DWJ6 353 aa13.47□□□□□ -0.25
ATG4D-211ENST00000589753 SLC27A4Q6P1M0 643 aa13.47□□□□□ -0.25
ATG4D-211ENST00000589753 NIPAL3Q6P499 406 aa13.47□□□□□ -0.25
ATG4D-211ENST00000589753 CASP12Q6UXS9 341 aa13.47□□□□□ -0.25
ATG4D-211ENST00000589753 FAM122BQ7Z309 247 aa13.47□□□□□ -0.25
ATG4D-211ENST00000589753 NUFIP2Q7Z417 695 aaKnown RBP13.47□□□□□ -0.25
ATG4D-211ENST00000589753 HDDC2Q7Z4H3 204 aa13.47□□□□□ -0.25
ATG4D-211ENST00000589753 LNX2Q8N448 690 aa13.47□□□□□ -0.25
ATG4D-211ENST00000589753 IQCF1Q8N6M8 205 aa13.47□□□□□ -0.25
ATG4D-211ENST00000589753 OR6K3Q8NGY3 331 aa13.47□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 57 ms