RNA–Protein interactions for RNA: ENST00000585941.5

LIG3-205, Transcript of DNA ligase 3, humanhuman

TSL 1 (best)

Gene LIG3, Length 1,699 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-205ENST00000585941 PUDPQ08623 228 aa12.8□□□□□ -0.36
LIG3-205ENST00000585941 ACKR1Q16570 336 aa12.8□□□□□ -0.36
LIG3-205ENST00000585941 SLC6A19Q695T7 634 aa12.8□□□□□ -0.36
LIG3-205ENST00000585941 BICRALQ6AI39 1079 aa12.8□□□□□ -0.36
LIG3-205ENST00000585941 DMKNQ6E0U4 476 aaPredicted RBP12.8□□□□□ -0.36
LIG3-205ENST00000585941 PAMR1Q6UXH9 720 aa12.8□□□□□ -0.36
LIG3-205ENST00000585941 PLEKHG7Q6ZR37 379 aa12.8□□□□□ -0.36
LIG3-205ENST00000585941 H1FNTQ75WM6 255 aaPredicted RBP12.8□□□□□ -0.36
LIG3-205ENST00000585941 NEIL3Q8TAT5 605 aa12.8□□□□□ -0.36
LIG3-205ENST00000585941 ZNF417Q8TAU3 575 aa12.8□□□□□ -0.36
LIG3-205ENST00000585941 ZNF519Q8TB69 540 aa12.8□□□□□ -0.36
LIG3-205ENST00000585941 ZBTB8AQ96BR9 441 aa12.8□□□□□ -0.36
LIG3-205ENST00000585941 WDFY2Q96P53 400 aa12.8□□□□□ -0.36
LIG3-205ENST00000585941 ZNF587Q96SQ5 575 aaPredicted RBP12.8□□□□□ -0.36
LIG3-205ENST00000585941 HDHD5Q9BXW7 423 aa12.8□□□□□ -0.36
LIG3-205ENST00000585941 RERGLQ9H628 205 aa12.8□□□□□ -0.36
LIG3-205ENST00000585941 ZNF160Q9HCG1 818 aa12.8□□□□□ -0.36
LIG3-205ENST00000585941 NCDNQ9UBB6 729 aa12.8□□□□□ -0.36
LIG3-205ENST00000585941 TMEM14AQ9Y6G1 99 aa12.8□□□□□ -0.36
LIG3-205ENST00000585941 A0A1B0GVG6 124 aa12.8□□□□□ -0.36
LIG3-205ENST00000585941 PRSS37A4D1T9 235 aa12.8□□□□□ -0.36
LIG3-205ENST00000585941 LOC110117498-PIK3R3F6TDL0 507 aa12.8□□□□□ -0.36
LIG3-205ENST00000585941 PHYHO14832 338 aa12.8□□□□□ -0.36
LIG3-205ENST00000585941 CASKO14936 926 aa12.8□□□□□ -0.36
LIG3-205ENST00000585941 SELENOFO60613 162 aa12.8□□□□□ -0.36
LIG3-205ENST00000585941 ACVR1BP36896 505 aa12.8□□□□□ -0.36
LIG3-205ENST00000585941 MTNR1BP49286 362 aa12.8□□□□□ -0.36
LIG3-205ENST00000585941 DAP3P51398 398 aaKnown RBP12.8□□□□□ -0.36
LIG3-205ENST00000585941 CHAF1BQ13112 559 aa12.8□□□□□ -0.36
LIG3-205ENST00000585941 HNRNPA0Q13151 305 aaKnown RBP12.8□□□□□ -0.36
LIG3-205ENST00000585941 C3orf33Q6P1S2 294 aa12.8□□□□□ -0.36
LIG3-205ENST00000585941 RPL22L1Q6P5R6 122 aaKnown RBP12.8□□□□□ -0.36
LIG3-205ENST00000585941 ARL9Q6T311 187 aa12.8□□□□□ -0.36
LIG3-205ENST00000585941 IL20RBQ6UXL0 311 aa12.8□□□□□ -0.36
LIG3-205ENST00000585941 PPP1R32Q7Z5V6 425 aa12.8□□□□□ -0.36
LIG3-205ENST00000585941 CCDC190Q86UF4 302 aa12.8□□□□□ -0.36
LIG3-205ENST00000585941 GHDCQ8N2G8 530 aa12.8□□□□□ -0.36
LIG3-205ENST00000585941 TMEM156Q8N614 296 aa12.8□□□□□ -0.36
LIG3-205ENST00000585941 MINDY2Q8NBR6 621 aa12.8□□□□□ -0.36
LIG3-205ENST00000585941 CHPT1Q8WUD6 406 aa12.8□□□□□ -0.36
LIG3-205ENST00000585941 ZNRF4Q8WWF5 429 aa12.8□□□□□ -0.36
LIG3-205ENST00000585941 SGCZQ96LD1 299 aa12.8□□□□□ -0.36
LIG3-205ENST00000585941 KCNS3Q9BQ31 491 aa12.8□□□□□ -0.36
LIG3-205ENST00000585941 GPR87Q9BY21 358 aa12.8□□□□□ -0.36
LIG3-205ENST00000585941 ANGPTL4Q9BY76 406 aa12.8□□□□□ -0.36
LIG3-205ENST00000585941 TPK1Q9H3S4 243 aa12.8□□□□□ -0.36
LIG3-205ENST00000585941 CDCP1Q9H5V8 836 aa12.8□□□□□ -0.36
LIG3-205ENST00000585941 SRA1Q9HD15 236 aaKnown RBP12.8□□□□□ -0.36
LIG3-205ENST00000585941 FANCFQ9NPI8 374 aa12.8□□□□□ -0.36
LIG3-205ENST00000585941 ALKBH4Q9NXW9 302 aa12.8□□□□□ -0.36
LIG3-205ENST00000585941 VSX1Q9NZR4 365 aaPredicted RBP12.8□□□□□ -0.36
LIG3-205ENST00000585941 B3GALT5Q9Y2C3 310 aa12.8□□□□□ -0.36
LIG3-205ENST00000585941 SIRT4Q9Y6E7 314 aaPredicted RBP12.8□□□□□ -0.36
LIG3-205ENST00000585941 ISPDA4D126 451 aa12.79□□□□□ -0.36
LIG3-205ENST00000585941 ANKRD33BA6NCL7 494 aa12.79□□□□□ -0.36
LIG3-205ENST00000585941 HSPB2A8KAH6 182 aa12.79□□□□□ -0.36
LIG3-205ENST00000585941 CENPBD1B2RD01 187 aa12.79□□□□□ -0.36
LIG3-205ENST00000585941 B4DXG7 233 aa12.79□□□□□ -0.36
LIG3-205ENST00000585941 C21orf140B9A014 251 aa12.79□□□□□ -0.36
LIG3-205ENST00000585941 GPRIN2O60269 458 aa12.79□□□□□ -0.36
LIG3-205ENST00000585941 SULT1C4O75897 302 aa12.79□□□□□ -0.36
LIG3-205ENST00000585941 WISP1O95388 367 aa12.79□□□□□ -0.36
LIG3-205ENST00000585941 TFPIP10646 304 aa12.79□□□□□ -0.36
LIG3-205ENST00000585941 OTX2P32243 289 aa12.79□□□□□ -0.36
LIG3-205ENST00000585941 TGM4P49221 684 aa12.79□□□□□ -0.36
LIG3-205ENST00000585941 SIRPAP78324 504 aa12.79□□□□□ -0.36
LIG3-205ENST00000585941 MXD1Q05195 221 aa12.79□□□□□ -0.36
LIG3-205ENST00000585941 HSPB2Q16082 182 aa12.79□□□□□ -0.36
LIG3-205ENST00000585941 ZNF181Q2M3W8 571 aa12.79□□□□□ -0.36
LIG3-205ENST00000585941 TP53I3Q53FA7 332 aa12.79□□□□□ -0.36
LIG3-205ENST00000585941 SLC22A10Q63ZE4 541 aa12.79□□□□□ -0.36
LIG3-205ENST00000585941 TMEM91Q6ZNR0 172 aa12.79□□□□□ -0.36
LIG3-205ENST00000585941 Q6ZNX1 250 aa12.79□□□□□ -0.36
LIG3-205ENST00000585941 SSX6Q7RTT6 188 aa12.79□□□□□ -0.36
LIG3-205ENST00000585941 TIPARPQ7Z3E1 657 aaKnown RBP12.79□□□□□ -0.36
LIG3-205ENST00000585941 PLCZ1Q86YW0 608 aa12.79□□□□□ -0.36
LIG3-205ENST00000585941 TIGD4Q8IY51 512 aa12.79□□□□□ -0.36
LIG3-205ENST00000585941 OR6V1Q8N148 313 aa12.79□□□□□ -0.36
LIG3-205ENST00000585941 TEX19Q8NA77 164 aa12.79□□□□□ -0.36
LIG3-205ENST00000585941 ADPRHL1Q8NDY3 354 aa12.79□□□□□ -0.36
LIG3-205ENST00000585941 PAQR8Q8TEZ7 354 aa12.79□□□□□ -0.36
LIG3-205ENST00000585941 SMIM19Q96E16 107 aa12.79□□□□□ -0.36
LIG3-205ENST00000585941 PELI1Q96FA3 418 aa12.79□□□□□ -0.36
LIG3-205ENST00000585941 SLC30A2Q9BRI3 323 aa12.79□□□□□ -0.36
LIG3-205ENST00000585941 B3GNT4Q9C0J1 378 aa12.79□□□□□ -0.36
LIG3-205ENST00000585941 MARCH7Q9H992 704 aa12.79□□□□□ -0.36
LIG3-205ENST00000585941 CHST11Q9NPF2 352 aa12.79□□□□□ -0.36
LIG3-205ENST00000585941 ST6GALNAC2Q9UJ37 374 aa12.79□□□□□ -0.36
LIG3-205ENST00000585941 UGT2A1Q9Y4X1 527 aa12.79□□□□□ -0.36
LIG3-205ENST00000585941 SLC35F4A4IF30 521 aa12.78□□□□□ -0.36
LIG3-205ENST00000585941 LIPT2A6NK58 231 aa12.78□□□□□ -0.36
LIG3-205ENST00000585941 C9orf172C9J069 976 aa12.78□□□□□ -0.36
LIG3-205ENST00000585941 E9PI62 339 aa12.78□□□□□ -0.36
LIG3-205ENST00000585941 SNX4O95219 450 aa12.78□□□□□ -0.36
LIG3-205ENST00000585941 CELA2AP08217 269 aa12.78□□□□□ -0.36
LIG3-205ENST00000585941 CRABP1P29762 137 aa12.78□□□□□ -0.36
LIG3-205ENST00000585941 TLE3Q04726 772 aa12.78□□□□□ -0.36
LIG3-205ENST00000585941 SELENBP1Q13228 472 aa12.78□□□□□ -0.36
LIG3-205ENST00000585941 CDK5R1Q15078 307 aa12.78□□□□□ -0.36
LIG3-205ENST00000585941 OR7A5Q15622 319 aa12.78□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 27 ms