RNA–Protein interactions for RNA: ENST00000582653.1

SHMT1-209, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 3

Gene SHMT1, Length 879 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-209ENST00000582653 VHLLQ6RSH7 139 aa17.79■□□□□ 0.44
SHMT1-209ENST00000582653 MYPOPQ86VE0 399 aaPredicted RBP17.79■□□□□ 0.44
SHMT1-209ENST00000582653 RANBP3LQ86VV4 465 aaPredicted RBP17.79■□□□□ 0.44
SHMT1-209ENST00000582653 RBM45Q8IUH3 476 aaKnown RBP17.79■□□□□ 0.44
SHMT1-209ENST00000582653 UEVLDQ8IX04 471 aa17.79■□□□□ 0.44
SHMT1-209ENST00000582653 TMEM123Q8N131 208 aa17.79■□□□□ 0.44
SHMT1-209ENST00000582653 C10orf53Q8N6V4 93 aa17.79■□□□□ 0.44
SHMT1-209ENST00000582653 TXNDC15Q96J42 360 aa17.79■□□□□ 0.44
SHMT1-209ENST00000582653 EPYCQ99645 322 aa17.79■□□□□ 0.44
SHMT1-209ENST00000582653 ARHGDIGQ99819 225 aa17.79■□□□□ 0.44
SHMT1-209ENST00000582653 KCNS3Q9BQ31 491 aa17.79■□□□□ 0.44
SHMT1-209ENST00000582653 TMEM160Q9NX00 188 aa17.79■□□□□ 0.44
SHMT1-209ENST00000582653 COL6A5A8TX70 2615 aa17.79■□□□□ 0.44
SHMT1-209ENST00000582653 RTTNQ86VV8 2226 aa17.78■□□□□ 0.44
SHMT1-209ENST00000582653 ZNF503-AS2A6NEH8 195 aa17.78■□□□□ 0.44
SHMT1-209ENST00000582653 USF1P22415 310 aaPredicted RBP17.78■□□□□ 0.44
SHMT1-209ENST00000582653 CALCRP30988 508 aa17.78■□□□□ 0.44
SHMT1-209ENST00000582653 SH3BGRP55822 239 aaPredicted RBP17.78■□□□□ 0.44
SHMT1-209ENST00000582653 NAAAQ02083 359 aa17.78■□□□□ 0.44
SHMT1-209ENST00000582653 PMS2P3Q13401 168 aa17.78■□□□□ 0.44
SHMT1-209ENST00000582653 NPTX1Q15818 432 aa17.78■□□□□ 0.44
SHMT1-209ENST00000582653 ADPRHL1Q8NDY3 354 aa17.78■□□□□ 0.44
SHMT1-209ENST00000582653 PIK3C3Q8NEB9 887 aa17.78■□□□□ 0.44
SHMT1-209ENST00000582653 OR4D11Q8NGI4 311 aa17.78■□□□□ 0.44
SHMT1-209ENST00000582653 OR6T1Q8NGN1 323 aa17.78■□□□□ 0.44
SHMT1-209ENST00000582653 OR6S1Q8NH40 331 aa17.78■□□□□ 0.44
SHMT1-209ENST00000582653 VANGL1Q8TAA9 524 aaPredicted RBP17.78■□□□□ 0.44
SHMT1-209ENST00000582653 KCNK17Q96T54 332 aa17.78■□□□□ 0.44
SHMT1-209ENST00000582653 ASPNQ9BXN1 380 aa17.78■□□□□ 0.44
SHMT1-209ENST00000582653 KAT8Q9H7Z6 458 aaKnown RBP17.78■□□□□ 0.44
SHMT1-209ENST00000582653 CA10Q9NS85 328 aa17.78■□□□□ 0.44
SHMT1-209ENST00000582653 ARGLU1Q9NWB6 273 aaPredicted RBP17.78■□□□□ 0.44
SHMT1-209ENST00000582653 MED29Q9NX70 200 aa17.78■□□□□ 0.44
SHMT1-209ENST00000582653 CDC42EP3Q9UKI2 254 aa17.78■□□□□ 0.44
SHMT1-209ENST00000582653 YLPM1P49750 1951 aaKnown RBP17.77■□□□□ 0.44
SHMT1-209ENST00000582653 ATRQ13535 2644 aa17.77■□□□□ 0.44
SHMT1-209ENST00000582653 CPSF4LA6NMK7 179 aaKnown RBP17.77■□□□□ 0.44
SHMT1-209ENST00000582653 B9A039 149 aa17.77■□□□□ 0.44
SHMT1-209ENST00000582653 FBP2O00757 339 aa17.77■□□□□ 0.44
SHMT1-209ENST00000582653 IGLV1-44P01699 117 aa17.77■□□□□ 0.44
SHMT1-209ENST00000582653 THY1P04216 161 aa17.77■□□□□ 0.44
SHMT1-209ENST00000582653 LSM11P83369 360 aaKnown RBP eCLIP17.77■□□□□ 0.44
SHMT1-209ENST00000582653 POU3F1Q03052 451 aaPredicted RBP17.77■□□□□ 0.44
SHMT1-209ENST00000582653 SF3A3Q12874 501 aaKnown RBP eCLIP17.77■□□□□ 0.443e-8■■■■■ 29.7
SHMT1-209ENST00000582653 MFSD13AQ14CX5 517 aa17.77■□□□□ 0.44
SHMT1-209ENST00000582653 ENTPD8Q5MY95 495 aa17.77■□□□□ 0.44
SHMT1-209ENST00000582653 NHLRC1Q6VVB1 395 aa17.77■□□□□ 0.44
SHMT1-209ENST00000582653 LINC00114Q6XXX2 140 aa17.77■□□□□ 0.44
SHMT1-209ENST00000582653 OR10A6Q8NH74 314 aa17.77■□□□□ 0.44
SHMT1-209ENST00000582653 TSPEARQ8WU66 669 aa17.77■□□□□ 0.44
SHMT1-209ENST00000582653 TMEM43Q9BTV4 400 aa17.77■□□□□ 0.44
SHMT1-209ENST00000582653 CORINQ9Y5Q5 1042 aa17.77■□□□□ 0.44
SHMT1-209ENST00000582653 SVEP1Q4LDE5 3571 aa17.76■□□□□ 0.43
SHMT1-209ENST00000582653 SLC35F4A4IF30 521 aa17.76■□□□□ 0.43
SHMT1-209ENST00000582653 VWC2LB2RUY7 222 aa17.76■□□□□ 0.43
SHMT1-209ENST00000582653 NDUFS8O00217 210 aa17.76■□□□□ 0.43
SHMT1-209ENST00000582653 PLPP3O14495 311 aa17.76■□□□□ 0.43
SHMT1-209ENST00000582653 SERPINI2O75830 405 aa17.76■□□□□ 0.43
SHMT1-209ENST00000582653 PDE5AO76074 875 aa17.76■□□□□ 0.43
SHMT1-209ENST00000582653 IGKV3-15P01624 115 aa17.76■□□□□ 0.43
SHMT1-209ENST00000582653 C8BP07358 591 aa17.76■□□□□ 0.43
SHMT1-209ENST00000582653 FAM157CP0CG43 387 aa17.76■□□□□ 0.43
SHMT1-209ENST00000582653 CBR1P16152 277 aa17.76■□□□□ 0.43
SHMT1-209ENST00000582653 AHCYP23526 432 aa17.76■□□□□ 0.43
SHMT1-209ENST00000582653 GZMMP51124 257 aa17.76■□□□□ 0.43
SHMT1-209ENST00000582653 IDH3GP51553 393 aaPredicted RBP17.76■□□□□ 0.43
SHMT1-209ENST00000582653 SNRPD2P62316 118 aaKnown RBP17.76■□□□□ 0.43
SHMT1-209ENST00000582653 METTL21CQ5VZV1 264 aa17.76■□□□□ 0.43
SHMT1-209ENST00000582653 ZNF613Q6PF04 617 aa17.76■□□□□ 0.43
SHMT1-209ENST00000582653 WDR88Q6ZMY6 472 aa17.76■□□□□ 0.43
SHMT1-209ENST00000582653 TSPYL5Q86VY4 417 aaPredicted RBP17.76■□□□□ 0.43
SHMT1-209ENST00000582653 C20orf196Q8IYI0 205 aa17.76■□□□□ 0.43
SHMT1-209ENST00000582653 SCAIQ8N9R8 606 aa17.76■□□□□ 0.43
SHMT1-209ENST00000582653 OR4F15Q8NGB8 312 aa17.76■□□□□ 0.43
SHMT1-209ENST00000582653 TAMM41Q96BW9 452 aa17.76■□□□□ 0.43
SHMT1-209ENST00000582653 SORCS2Q96PQ0 1159 aa17.76■□□□□ 0.43
SHMT1-209ENST00000582653 TMEM120AQ9BXJ8 343 aa17.76■□□□□ 0.43
SHMT1-209ENST00000582653 EVA1AQ9H8M9 152 aa17.76■□□□□ 0.43
SHMT1-209ENST00000582653 MRPL39Q9NYK5 338 aaKnown RBP17.76■□□□□ 0.43
SHMT1-209ENST00000582653 FKBP7Q9Y680 259 aa17.76■□□□□ 0.43
SHMT1-209ENST00000582653 AKAP8O43823 692 aaKnown RBP17.75■□□□□ 0.43
SHMT1-209ENST00000582653 FMO6PO60774 539 aa17.75■□□□□ 0.43
SHMT1-209ENST00000582653 LYPD3O95274 346 aa17.75■□□□□ 0.43
SHMT1-209ENST00000582653 OR4A8P0C604 315 aa17.75■□□□□ 0.43
SHMT1-209ENST00000582653 IGHV4-31P0DP07 118 aa17.75■□□□□ 0.43
SHMT1-209ENST00000582653 CD247P20963 164 aa17.75■□□□□ 0.43
SHMT1-209ENST00000582653 CAPZA2P47755 286 aa17.75■□□□□ 0.43
SHMT1-209ENST00000582653 PDLIM4P50479 330 aa17.75■□□□□ 0.43
SHMT1-209ENST00000582653 HGFACQ04756 655 aa17.75■□□□□ 0.43
SHMT1-209ENST00000582653 PUDPQ08623 228 aa17.75■□□□□ 0.43
SHMT1-209ENST00000582653 NPRL3Q12980 569 aa17.75■□□□□ 0.43
SHMT1-209ENST00000582653 CAMK2DQ13557 499 aa17.75■□□□□ 0.43
SHMT1-209ENST00000582653 EFNB3Q15768 340 aa17.75■□□□□ 0.43
SHMT1-209ENST00000582653 ADIPOQQ15848 244 aa17.75■□□□□ 0.43
SHMT1-209ENST00000582653 SWT1Q5T5J6 900 aaKnown RBP17.75■□□□□ 0.43
SHMT1-209ENST00000582653 MDP1Q86V88 176 aa17.75■□□□□ 0.43
SHMT1-209ENST00000582653 SIKE1Q9BRV8 207 aa17.75■□□□□ 0.43
SHMT1-209ENST00000582653 BEX2Q9BXY8 128 aa17.75■□□□□ 0.43
SHMT1-209ENST00000582653 FBXO9Q9UK97 447 aaPredicted RBP17.75■□□□□ 0.43
SHMT1-209ENST00000582653 NOX1Q9Y5S8 564 aa17.75■□□□□ 0.43
Retrieved 100 of 20,778 RNA–protein pairs in 37 ms