RNA–Protein interactions for RNA: ENST00000580002.5

SHMT1-207, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2

Gene SHMT1, Length 1,759 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-207ENST00000580002 CISD2Q8N5K1 135 aaKnown RBP22.41■■□□□ 1.18
SHMT1-207ENST00000580002 PNPLA2Q96AD5 504 aa22.41■■□□□ 1.18
SHMT1-207ENST00000580002 GRHPRQ9UBQ7 328 aa22.41■■□□□ 1.18
SHMT1-207ENST00000580002 BAIAP2Q9UQB8 552 aa22.41■■□□□ 1.18
SHMT1-207ENST00000580002 A0A1B0GTH9 108 aa22.4■■□□□ 1.18
SHMT1-207ENST00000580002 OR6C68A6NDL8 312 aa22.4■■□□□ 1.18
SHMT1-207ENST00000580002 ACTL6AO96019 429 aa22.4■■□□□ 1.18
SHMT1-207ENST00000580002 GYPBP06028 91 aa22.4■■□□□ 1.18
SHMT1-207ENST00000580002 SDHAP31040 664 aa22.4■■□□□ 1.18
SHMT1-207ENST00000580002 ZNF239Q16600 458 aaKnown RBP22.4■■□□□ 1.18
SHMT1-207ENST00000580002 AADACL4Q5VUY2 407 aa22.4■■□□□ 1.18
SHMT1-207ENST00000580002 ARHGAP11AQ6P4F7 1023 aa22.4■■□□□ 1.18
SHMT1-207ENST00000580002 FGD2Q7Z6J4 655 aa22.4■■□□□ 1.18
SHMT1-207ENST00000580002 OR9Q1Q8NGQ5 310 aa22.4■■□□□ 1.18
SHMT1-207ENST00000580002 HDAC2Q92769 488 aaKnown RBP22.4■■□□□ 1.18
SHMT1-207ENST00000580002 TSSK2Q96PF2 358 aa22.4■■□□□ 1.18
SHMT1-207ENST00000580002 TXNIPQ9H3M7 391 aa22.4■■□□□ 1.18
SHMT1-207ENST00000580002 A0A1W2PNV4 684 aa22.4■■□□□ 1.18
SHMT1-207ENST00000580002 NPIPA2E9PIF3 369 aa22.4■■□□□ 1.18
SHMT1-207ENST00000580002 NPIPA3F8WFD2 350 aa22.4■■□□□ 1.18
SHMT1-207ENST00000580002 TXNDC12O95881 172 aa22.4■■□□□ 1.18
SHMT1-207ENST00000580002 CRHBPP24387 322 aa22.4■■□□□ 1.18
SHMT1-207ENST00000580002 ACVR1BP36896 505 aa22.4■■□□□ 1.18
SHMT1-207ENST00000580002 RPL27P61353 136 aaKnown RBP22.4■■□□□ 1.18
SHMT1-207ENST00000580002 PRR30Q53SZ7 412 aaPredicted RBP22.4■■□□□ 1.18
SHMT1-207ENST00000580002 ARMC4Q5T2S8 1044 aa22.4■■□□□ 1.18
SHMT1-207ENST00000580002 SLC35D2Q76EJ3 337 aa22.4■■□□□ 1.18
SHMT1-207ENST00000580002 CXXC5Q7LFL8 322 aaKnown RBP22.4■■□□□ 1.18
SHMT1-207ENST00000580002 PXKQ7Z7A4 578 aa22.4■■□□□ 1.18
SHMT1-207ENST00000580002 SLC43A2Q8N370 569 aa22.4■■□□□ 1.18
SHMT1-207ENST00000580002 ADPRHL1Q8NDY3 354 aa22.4■■□□□ 1.18
SHMT1-207ENST00000580002 ANKK1Q8NFD2 765 aa22.4■■□□□ 1.18
SHMT1-207ENST00000580002 ZNF519Q8TB69 540 aa22.4■■□□□ 1.18
SHMT1-207ENST00000580002 CLN6Q9NWW5 311 aa22.4■■□□□ 1.18
SHMT1-207ENST00000580002 CAMK2AQ9UQM7 478 aa22.4■■□□□ 1.18
SHMT1-207ENST00000580002 A0A1B0GVC2 190 aa22.39■■□□□ 1.17
SHMT1-207ENST00000580002 PTGES3LE9PB15 166 aa22.39■■□□□ 1.17
SHMT1-207ENST00000580002 ARHGEF9O43307 516 aa22.39■■□□□ 1.17
SHMT1-207ENST00000580002 TRAF3IP2O43734 574 aaPredicted RBP22.39■■□□□ 1.17
SHMT1-207ENST00000580002 ADRA2AP08913 450 aa22.39■■□□□ 1.17
SHMT1-207ENST00000580002 KRR1Q13601 381 aaKnown RBP22.39■■□□□ 1.17
SHMT1-207ENST00000580002 BCL2A1Q16548 175 aa22.39■■□□□ 1.17
SHMT1-207ENST00000580002 OCLNQ16625 522 aa22.39■■□□□ 1.17
SHMT1-207ENST00000580002 TMEM201Q5SNT2 666 aa22.39■■□□□ 1.17
SHMT1-207ENST00000580002 LEG1Q6P5S2 330 aa22.39■■□□□ 1.17
SHMT1-207ENST00000580002 MEIOBQ8N635 442 aa22.39■■□□□ 1.17
SHMT1-207ENST00000580002 ARIH2OSQ8N7S6 290 aa22.39■■□□□ 1.17
SHMT1-207ENST00000580002 OXGR1Q96P68 337 aa22.39■■□□□ 1.17
SHMT1-207ENST00000580002 FANCFQ9NPI8 374 aa22.39■■□□□ 1.17
SHMT1-207ENST00000580002 PLSCR2Q9NRY7 297 aa22.39■■□□□ 1.17
SHMT1-207ENST00000580002 MYRFQ9Y2G1 1151 aa22.39■■□□□ 1.17
SHMT1-207ENST00000580002 RIIAD1A6NNX1 92 aa22.38■■□□□ 1.17
SHMT1-207ENST00000580002 EIF1BO60739 113 aaKnown RBP22.38■■□□□ 1.17
SHMT1-207ENST00000580002 NTF4P34130 210 aa22.38■■□□□ 1.17
SHMT1-207ENST00000580002 MVKQ03426 396 aa22.38■■□□□ 1.17
SHMT1-207ENST00000580002 OR51L1Q8NGJ5 315 aa22.38■■□□□ 1.17
SHMT1-207ENST00000580002 OR5M9Q8NGP3 310 aa22.38■■□□□ 1.17
SHMT1-207ENST00000580002 TUBA1CQ9BQE3 449 aa22.38■■□□□ 1.17
SHMT1-207ENST00000580002 TEX12Q9BXU0 123 aa22.38■■□□□ 1.17
SHMT1-207ENST00000580002 A0A1W2PRG6 482 aa22.38■■□□□ 1.17
SHMT1-207ENST00000580002 DCTN6O00399 190 aa22.38■■□□□ 1.17
SHMT1-207ENST00000580002 IDH3BO43837 385 aa22.38■■□□□ 1.17
SHMT1-207ENST00000580002 MPZL2O60487 215 aa22.38■■□□□ 1.17
SHMT1-207ENST00000580002 AQP8O94778 261 aa22.38■■□□□ 1.17
SHMT1-207ENST00000580002 APOL3O95236 402 aa22.38■■□□□ 1.17
SHMT1-207ENST00000580002 APEHP13798 732 aaKnown RBP22.38■■□□□ 1.17
SHMT1-207ENST00000580002 SLC17A1Q14916 467 aa22.38■■□□□ 1.17
SHMT1-207ENST00000580002 UEVLDQ8IX04 471 aa22.38■■□□□ 1.17
SHMT1-207ENST00000580002 ABHD3Q8WU67 409 aa22.38■■□□□ 1.17
SHMT1-207ENST00000580002 ASB10Q8WXI3 467 aa22.38■■□□□ 1.17
SHMT1-207ENST00000580002 GGHQ92820 318 aa22.38■■□□□ 1.17
SHMT1-207ENST00000580002 ZNF385AQ96PM9 386 aaKnown RBP22.38■■□□□ 1.17
SHMT1-207ENST00000580002 NAA11Q9BSU3 229 aaPredicted RBP22.38■■□□□ 1.17
SHMT1-207ENST00000580002 OR51V1Q9H2C8 321 aa22.38■■□□□ 1.17
SHMT1-207ENST00000580002 TUBD1Q9UJT1 453 aa22.38■■□□□ 1.17
SHMT1-207ENST00000580002 FAM171A2A8MVW0 826 aa22.37■■□□□ 1.17
SHMT1-207ENST00000580002 FAM20BO75063 409 aa22.37■■□□□ 1.17
SHMT1-207ENST00000580002 BCL10O95999 233 aa22.37■■□□□ 1.17
SHMT1-207ENST00000580002 IGHMP01871 453 aa22.37■■□□□ 1.17
SHMT1-207ENST00000580002 CPN1P15169 458 aa22.37■■□□□ 1.17
SHMT1-207ENST00000580002 ACVR2AP27037 513 aa22.37■■□□□ 1.17
SHMT1-207ENST00000580002 BIDP55957 195 aa22.37■■□□□ 1.17
SHMT1-207ENST00000580002 LY6DQ14210 128 aa22.37■■□□□ 1.17
SHMT1-207ENST00000580002 PON3Q15166 354 aa22.37■■□□□ 1.17
SHMT1-207ENST00000580002 SLC25A30Q5SVS4 291 aa22.37■■□□□ 1.17
SHMT1-207ENST00000580002 ZIC4Q8N9L1 334 aa22.37■■□□□ 1.17
SHMT1-207ENST00000580002 FNDC9Q8TBE3 224 aa22.37■■□□□ 1.17
SHMT1-207ENST00000580002 PRRG3Q9BZD7 231 aa22.37■■□□□ 1.17
SHMT1-207ENST00000580002 ING1Q9UK53 422 aaPredicted RBP22.37■■□□□ 1.17
SHMT1-207ENST00000580002 KIAA1549Q9HCM3 1950 aa22.37■■□□□ 1.17
SHMT1-207ENST00000580002 PRR23D1E9PI22 279 aaPredicted RBP22.36■■□□□ 1.17
SHMT1-207ENST00000580002 PRR23D2P0DMB1 279 aaPredicted RBP22.36■■□□□ 1.17
SHMT1-207ENST00000580002 ZNF3P17036 446 aa22.36■■□□□ 1.17
SHMT1-207ENST00000580002 C1DQ13901 141 aaKnown RBP22.36■■□□□ 1.17
SHMT1-207ENST00000580002 EEF1A1P5Q5VTE0 462 aa22.36■■□□□ 1.17
SHMT1-207ENST00000580002 ZNF324BQ6AW86 544 aaPredicted RBP22.36■■□□□ 1.17
SHMT1-207ENST00000580002 PM20D2Q8IYS1 436 aa22.36■■□□□ 1.17
SHMT1-207ENST00000580002 SYT14Q8NB59 555 aa22.36■■□□□ 1.17
SHMT1-207ENST00000580002 OR9K2Q8NGE7 335 aa22.36■■□□□ 1.17
SHMT1-207ENST00000580002 RPRD1BQ9NQG5 326 aaKnown RBP22.36■■□□□ 1.17
Retrieved 100 of 20,778 RNA–protein pairs in 35.7 ms