RNA–Protein interactions for RNA: ENST00000575976.1

NUP88-211, Transcript of nucleoporin 88, humanhuman

TSL 2

Gene NUP88, Length 599 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-211ENST00000575976 C12orf49Q9H741 205 aa7.6□□□□□ -1.19
NUP88-211ENST00000575976 MCCC2Q9HCC0 563 aa7.6□□□□□ -1.19
NUP88-211ENST00000575976 PLSCR4Q9NRQ2 329 aa7.6□□□□□ -1.19
NUP88-211ENST00000575976 EMC3Q9P0I2 261 aa7.6□□□□□ -1.19
NUP88-211ENST00000575976 MGAT4BQ9UQ53 548 aa7.6□□□□□ -1.19
NUP88-211ENST00000575976 SIGLEC7Q9Y286 467 aa7.6□□□□□ -1.19
NUP88-211ENST00000575976 NOX1Q9Y5S8 564 aa7.6□□□□□ -1.19
NUP88-211ENST00000575976 ARRDC5A6NEK1 342 aa7.59□□□□□ -1.19
NUP88-211ENST00000575976 SAC3D1A6NKF1 404 aa7.59□□□□□ -1.19
NUP88-211ENST00000575976 FAM90A27PA6NNH2 459 aa7.59□□□□□ -1.19
NUP88-211ENST00000575976 G3V2T6 193 aa7.59□□□□□ -1.19
NUP88-211ENST00000575976 DVL2O14641 736 aa7.59□□□□□ -1.19
NUP88-211ENST00000575976 MRPL33O75394 65 aaKnown RBP7.59□□□□□ -1.19
NUP88-211ENST00000575976 CD8BP10966 210 aa7.59□□□□□ -1.19
NUP88-211ENST00000575976 IFNGR1P15260 489 aa7.59□□□□□ -1.19
NUP88-211ENST00000575976 ZNF23P17027 643 aa7.59□□□□□ -1.19
NUP88-211ENST00000575976 AGAP20933 346 aa7.59□□□□□ -1.19
NUP88-211ENST00000575976 SELENOPP49908 381 aa7.59□□□□□ -1.19
NUP88-211ENST00000575976 FXYD6P3P58550 94 aa7.59□□□□□ -1.19
NUP88-211ENST00000575976 CTXN1P60606 82 aa7.59□□□□□ -1.19
NUP88-211ENST00000575976 MELKQ14680 651 aa7.59□□□□□ -1.19
NUP88-211ENST00000575976 ANKDD1AQ495B1 522 aa7.59□□□□□ -1.19
NUP88-211ENST00000575976 ALG10Q5BKT4 473 aa7.59□□□□□ -1.19
NUP88-211ENST00000575976 MYO7BQ6PIF6 2116 aa7.59□□□□□ -1.19
NUP88-211ENST00000575976 THSD4Q6ZMP0 1018 aa7.59□□□□□ -1.19
NUP88-211ENST00000575976 RASSF6Q6ZTQ3 369 aa7.59□□□□□ -1.19
NUP88-211ENST00000575976 SLC35D2Q76EJ3 337 aa7.59□□□□□ -1.19
NUP88-211ENST00000575976 AAED1Q7RTV5 226 aa7.59□□□□□ -1.19
NUP88-211ENST00000575976 LUZP2Q86TE4 346 aa7.59□□□□□ -1.19
NUP88-211ENST00000575976 HIPK1Q86Z02 1210 aa7.59□□□□□ -1.19
NUP88-211ENST00000575976 WDFY1Q8IWB7 410 aa7.59□□□□□ -1.19
NUP88-211ENST00000575976 PQLC1Q8N2U9 271 aa7.59□□□□□ -1.19
NUP88-211ENST00000575976 ANKK1Q8NFD2 765 aa7.59□□□□□ -1.19
NUP88-211ENST00000575976 LILRB4Q8NHJ6 448 aa7.59□□□□□ -1.19
NUP88-211ENST00000575976 SSC4DQ8WTU2 575 aa7.59□□□□□ -1.19
NUP88-211ENST00000575976 CA5BP1Q8WTZ4 195 aa7.59□□□□□ -1.19
NUP88-211ENST00000575976 TMEM45BQ96B21 275 aa7.59□□□□□ -1.19
NUP88-211ENST00000575976 EMC6Q9BV81 110 aa7.59□□□□□ -1.19
NUP88-211ENST00000575976 DGCR6LQ9BY27 220 aa7.59□□□□□ -1.19
NUP88-211ENST00000575976 OPN3Q9H1Y3 402 aaPredicted RBP7.59□□□□□ -1.19
NUP88-211ENST00000575976 OR52D1Q9H346 318 aa7.59□□□□□ -1.19
NUP88-211ENST00000575976 INIPQ9NRY2 104 aa7.59□□□□□ -1.19
NUP88-211ENST00000575976 MED29Q9NX70 200 aa7.59□□□□□ -1.19
NUP88-211ENST00000575976 PRSS50Q9UI38 385 aa7.59□□□□□ -1.19
NUP88-211ENST00000575976 ZNF346Q9UL40 294 aaKnown RBP7.59□□□□□ -1.19
NUP88-211ENST00000575976 PROCRQ9UNN8 238 aa7.59□□□□□ -1.19
NUP88-211ENST00000575976 POLQO75417 2590 aa7.59□□□□□ -1.2
NUP88-211ENST00000575976 CACNA1DQ01668 2161 aa7.59□□□□□ -1.2
NUP88-211ENST00000575976 MED12LQ86YW9 2145 aa7.58□□□□□ -1.2
NUP88-211ENST00000575976 DOCK7Q96N67 2140 aa7.58□□□□□ -1.2
NUP88-211ENST00000575976 NBASA2RRP1 2371 aa7.58□□□□□ -1.2
NUP88-211ENST00000575976 SPTBN1Q01082 2364 aaKnown RBP7.58□□□□□ -1.2
NUP88-211ENST00000575976 SLC35F4A4IF30 521 aa7.58□□□□□ -1.2
NUP88-211ENST00000575976 NKX2-6A6NCS4 301 aa7.58□□□□□ -1.2
NUP88-211ENST00000575976 A8MXE2 369 aa7.58□□□□□ -1.2
NUP88-211ENST00000575976 EEF1E1-BLOC1S5C9J1V9 151 aa7.58□□□□□ -1.2
NUP88-211ENST00000575976 MCIDASD6RGH6 385 aa7.58□□□□□ -1.2
NUP88-211ENST00000575976 PDLIM1O00151 329 aa7.58□□□□□ -1.2
NUP88-211ENST00000575976 MSTNO14793 375 aa7.58□□□□□ -1.2
NUP88-211ENST00000575976 EEF1E1O43324 174 aaKnown RBP7.58□□□□□ -1.2
NUP88-211ENST00000575976 ZNF432O94892 652 aa7.58□□□□□ -1.2
NUP88-211ENST00000575976 NDUFB2O95178 105 aa7.58□□□□□ -1.2
NUP88-211ENST00000575976 CLDN14O95500 239 aa7.58□□□□□ -1.2
NUP88-211ENST00000575976 BCL10O95999 233 aa7.58□□□□□ -1.2
NUP88-211ENST00000575976 ADAP00813 363 aa7.58□□□□□ -1.2
NUP88-211ENST00000575976 IGHV3-9P01782 118 aa7.58□□□□□ -1.2
NUP88-211ENST00000575976 TP53P04637 393 aaPredicted RBP7.58□□□□□ -1.2
NUP88-211ENST00000575976 IGFBP1P08833 259 aaPredicted RBP7.58□□□□□ -1.2
NUP88-211ENST00000575976 ANXA8P13928 327 aa7.58□□□□□ -1.2
NUP88-211ENST00000575976 ANPEPP15144 967 aa7.58□□□□□ -1.2
NUP88-211ENST00000575976 RPL4P36578 427 aaKnown RBP7.58□□□□□ -1.2
NUP88-211ENST00000575976 OR3A2P47893 321 aa7.58□□□□□ -1.2
NUP88-211ENST00000575976 DAPP51397 102 aa7.58□□□□□ -1.2
NUP88-211ENST00000575976 BIDP55957 195 aa7.58□□□□□ -1.2
NUP88-211ENST00000575976 PRPS1P60891 318 aa7.58□□□□□ -1.2
NUP88-211ENST00000575976 COX10Q12887 443 aa7.58□□□□□ -1.2
NUP88-211ENST00000575976 ACKR1Q16570 336 aa7.58□□□□□ -1.2
NUP88-211ENST00000575976 RFX4Q33E94 735 aa7.58□□□□□ -1.2
NUP88-211ENST00000575976 TSPO2Q5TGU0 170 aa7.58□□□□□ -1.2
NUP88-211ENST00000575976 HIST2H2BCQ6DN03 193 aa7.58□□□□□ -1.2
NUP88-211ENST00000575976 NIPAL3Q6P499 406 aa7.58□□□□□ -1.2
NUP88-211ENST00000575976 FAHD1Q6P587 224 aa7.58□□□□□ -1.2
NUP88-211ENST00000575976 ZNF474Q6S9Z5 364 aaPredicted RBP7.58□□□□□ -1.2
NUP88-211ENST00000575976 SMARCD3Q6STE5 483 aa7.58□□□□□ -1.2
NUP88-211ENST00000575976 KLHL17Q6TDP4 642 aa7.58□□□□□ -1.2
NUP88-211ENST00000575976 CASP12Q6UXS9 341 aa7.58□□□□□ -1.2
NUP88-211ENST00000575976 CD300LDQ6UXZ3 194 aa7.58□□□□□ -1.2
NUP88-211ENST00000575976 TFAP2EQ6VUC0 442 aa7.58□□□□□ -1.2
NUP88-211ENST00000575976 ZNF620Q6ZNG0 422 aa7.58□□□□□ -1.2
NUP88-211ENST00000575976 STK32CQ86UX6 486 aa7.58□□□□□ -1.2
NUP88-211ENST00000575976 KIF18BQ86Y91 864 aa7.58□□□□□ -1.2
NUP88-211ENST00000575976 ZDHHC13Q8IUH4 622 aa7.58□□□□□ -1.2
NUP88-211ENST00000575976 ZNF100Q8IYN0 542 aa7.58□□□□□ -1.2
NUP88-211ENST00000575976 SVOPLQ8N434 492 aa7.58□□□□□ -1.2
NUP88-211ENST00000575976 ATG16L2Q8NAA4 619 aa7.58□□□□□ -1.2
NUP88-211ENST00000575976 APH1AQ96BI3 265 aa7.58□□□□□ -1.2
NUP88-211ENST00000575976 SAMD8Q96LT4 415 aa7.58□□□□□ -1.2
NUP88-211ENST00000575976 PIGMQ9H3S5 423 aa7.58□□□□□ -1.2
NUP88-211ENST00000575976 EGLN3Q9H6Z9 239 aa7.58□□□□□ -1.2
NUP88-211ENST00000575976 SMURF2Q9HAU4 748 aa7.58□□□□□ -1.2
Retrieved 100 of 20,778 RNA–protein pairs in 27.7 ms