RNA–Protein interactions for RNA: ENST00000574029.5

VPS53-216, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4 BASIC

Gene VPS53, Length 585 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-216ENST00000574029 AKAP8O43823 692 aaKnown RBP18.19■□□□□ 0.5
VPS53-216ENST00000574029 ETS2P15036 469 aa18.19■□□□□ 0.5
VPS53-216ENST00000574029 HOXB9P17482 250 aaPredicted RBP18.19■□□□□ 0.5
VPS53-216ENST00000574029 APEX1P27695 318 aaKnown RBP18.19■□□□□ 0.5
VPS53-216ENST00000574029 HTR2AP28223 471 aa18.19■□□□□ 0.5
VPS53-216ENST00000574029 PRKAR1BP31321 381 aa18.19■□□□□ 0.5
VPS53-216ENST00000574029 CDH15P55291 814 aa18.19■□□□□ 0.5
VPS53-216ENST00000574029 POU3F1Q03052 451 aaPredicted RBP18.19■□□□□ 0.5
VPS53-216ENST00000574029 SNTB2Q13425 540 aaKnown RBP18.19■□□□□ 0.5
VPS53-216ENST00000574029 DAG1Q14118 895 aa18.19■□□□□ 0.5
VPS53-216ENST00000574029 OR52B2Q96RD2 323 aa18.19■□□□□ 0.5
VPS53-216ENST00000574029 DYNLRB1Q9NP97 96 aa18.19■□□□□ 0.5
VPS53-216ENST00000574029 TRAV36DV7A0A075B6V5 113 aa18.18■□□□□ 0.5
VPS53-216ENST00000574029 A0A1B0GWA3 101 aa18.18■□□□□ 0.5
VPS53-216ENST00000574029 MS4A18H0YCH9 400 aa18.18■□□□□ 0.5
VPS53-216ENST00000574029 M0R3G1 203 aa18.18■□□□□ 0.5
VPS53-216ENST00000574029 HAX1O00165 279 aa18.18■□□□□ 0.5
VPS53-216ENST00000574029 UBDO15205 165 aa18.18■□□□□ 0.5
VPS53-216ENST00000574029 SEC14L2O76054 403 aa18.18■□□□□ 0.5
VPS53-216ENST00000574029 ADRA2AP08913 450 aa18.18■□□□□ 0.5
VPS53-216ENST00000574029 NR4A1P22736 598 aa18.18■□□□□ 0.5
VPS53-216ENST00000574029 CAPZA2P47755 286 aa18.18■□□□□ 0.5
VPS53-216ENST00000574029 TRIP10Q15642 601 aa18.18■□□□□ 0.5
VPS53-216ENST00000574029 MS4A18Q3C1V0 323 aa18.18■□□□□ 0.5
VPS53-216ENST00000574029 COMTD1Q86VU5 262 aa18.18■□□□□ 0.5
VPS53-216ENST00000574029 C20orf196Q8IYI0 205 aa18.18■□□□□ 0.5
VPS53-216ENST00000574029 OR6S1Q8NH40 331 aa18.18■□□□□ 0.5
VPS53-216ENST00000574029 DNAJA4Q8WW22 397 aaPredicted RBP18.18■□□□□ 0.5
VPS53-216ENST00000574029 SLC41A3Q96GZ6 507 aa18.18■□□□□ 0.5
VPS53-216ENST00000574029 SNX18Q96RF0 628 aa18.18■□□□□ 0.5
VPS53-216ENST00000574029 KLHL14Q9P2G3 628 aa18.18■□□□□ 0.5
VPS53-216ENST00000574029 CMAHPQ9Y471 501 aa18.18■□□□□ 0.5
VPS53-216ENST00000574029 C5orf58C9J3I9 102 aa18.17■□□□□ 0.5
VPS53-216ENST00000574029 TCF21O43680 179 aa18.17■□□□□ 0.5
VPS53-216ENST00000574029 HPRP00739 348 aa18.17■□□□□ 0.5
VPS53-216ENST00000574029 IFNGR1P15260 489 aa18.17■□□□□ 0.5
VPS53-216ENST00000574029 EVX1P49640 407 aa18.17■□□□□ 0.5
VPS53-216ENST00000574029 MSMPQ1L6U9 139 aa18.17■□□□□ 0.5
VPS53-216ENST00000574029 ALG10BQ5I7T1 473 aa18.17■□□□□ 0.5
VPS53-216ENST00000574029 KRT80Q6KB66 452 aa18.17■□□□□ 0.5
VPS53-216ENST00000574029 SLC2A7Q6PXP3 512 aa18.17■□□□□ 0.5
VPS53-216ENST00000574029 UGT2A3Q6UWM9 527 aa18.17■□□□□ 0.5
VPS53-216ENST00000574029 ZNF627Q7L945 461 aa18.17■□□□□ 0.5
VPS53-216ENST00000574029 MIER2Q8N344 545 aa18.17■□□□□ 0.5
VPS53-216ENST00000574029 MRPL24Q96A35 216 aaKnown RBP18.17■□□□□ 0.5
VPS53-216ENST00000574029 LRR1Q96L50 414 aa18.17■□□□□ 0.5
VPS53-216ENST00000574029 C7orf26Q96N11 449 aa18.17■□□□□ 0.5
VPS53-216ENST00000574029 ZNF75AQ96N20 296 aa18.17■□□□□ 0.5
VPS53-216ENST00000574029 INTS9Q9NV88 658 aaKnown RBP18.17■□□□□ 0.5
VPS53-216ENST00000574029 HLA-HP01893 362 aa18.16■□□□□ 0.5
VPS53-216ENST00000574029 ZNF35P13682 527 aa18.16■□□□□ 0.5
VPS53-216ENST00000574029 HLA-DOBP13765 273 aa18.16■□□□□ 0.5
VPS53-216ENST00000574029 CBLP22681 906 aa18.16■□□□□ 0.5
VPS53-216ENST00000574029 IL1RL1Q01638 556 aa18.16■□□□□ 0.5
VPS53-216ENST00000574029 MFSD13AQ14CX5 517 aa18.16■□□□□ 0.5
VPS53-216ENST00000574029 GSG1Q2KHT4 349 aa18.16■□□□□ 0.5
VPS53-216ENST00000574029 FAM91A1Q658Y4 838 aa18.16■□□□□ 0.5
VPS53-216ENST00000574029 ULK3Q6PHR2 472 aa18.16■□□□□ 0.5
VPS53-216ENST00000574029 DHRS4L2Q6PKH6 230 aa18.16■□□□□ 0.5
VPS53-216ENST00000574029 NHLRC1Q6VVB1 395 aa18.16■□□□□ 0.5
VPS53-216ENST00000574029 UEVLDQ8IX04 471 aa18.16■□□□□ 0.5
VPS53-216ENST00000574029 LRRC8CQ8TDW0 803 aa18.16■□□□□ 0.5
VPS53-216ENST00000574029 EMC6Q9BV81 110 aa18.16■□□□□ 0.5
VPS53-216ENST00000574029 MRPL37Q9BZE1 423 aaKnown RBP18.16■□□□□ 0.5
VPS53-216ENST00000574029 TPK1Q9H3S4 243 aa18.16■□□□□ 0.5
VPS53-216ENST00000574029 SLC25A37Q9NYZ2 338 aa18.16■□□□□ 0.5
VPS53-216ENST00000574029 CORINQ9Y5Q5 1042 aa18.16■□□□□ 0.5
VPS53-216ENST00000574029 A0A087WUJ7 227 aa18.15■□□□□ 0.5
VPS53-216ENST00000574029 LYNX1G3V0Z9 82 aa18.15■□□□□ 0.5
VPS53-216ENST00000574029 LYNX1P0DP58 116 aa18.15■□□□□ 0.5
VPS53-216ENST00000574029 ARAFP10398 606 aa18.15■□□□□ 0.5
VPS53-216ENST00000574029 ZNF14P17017 642 aaPredicted RBP18.15■□□□□ 0.5
VPS53-216ENST00000574029 SRP14P37108 136 aaKnown RBP18.15■□□□□ 0.5
VPS53-216ENST00000574029 DVL1P1P54792 670 aaPredicted RBP18.15■□□□□ 0.5
VPS53-216ENST00000574029 CARD17Q5XLA6 110 aa18.15■□□□□ 0.5
VPS53-216ENST00000574029 SCAIQ8N9R8 606 aa18.15■□□□□ 0.5
VPS53-216ENST00000574029 NFKBIDQ8NI38 313 aa18.15■□□□□ 0.5
VPS53-216ENST00000574029 SLC47A1Q96FL8 570 aa18.15■□□□□ 0.5
VPS53-216ENST00000574029 MS4A3Q96HJ5 214 aa18.15■□□□□ 0.5
VPS53-216ENST00000574029 ATP8B1O43520 1251 aa18.14■□□□□ 0.49
VPS53-216ENST00000574029 SYNGR3O43761 229 aa18.14■□□□□ 0.49
VPS53-216ENST00000574029 TPST1O60507 370 aa18.14■□□□□ 0.49
VPS53-216ENST00000574029 BGLAPP02818 100 aa18.14■□□□□ 0.49
VPS53-216ENST00000574029 CD79AP11912 226 aa18.14■□□□□ 0.49
VPS53-216ENST00000574029 NQO1P15559 274 aaKnown RBP18.14■□□□□ 0.49
VPS53-216ENST00000574029 GLRXP35754 106 aa18.14■□□□□ 0.49
VPS53-216ENST00000574029 MRPL19P49406 292 aaKnown RBP18.14■□□□□ 0.49
VPS53-216ENST00000574029 GLIPR1L2Q4G1C9 344 aa18.14■□□□□ 0.49
VPS53-216ENST00000574029 LRIF1Q5T3J3 769 aa18.14■□□□□ 0.49
VPS53-216ENST00000574029 WDFY1Q8IWB7 410 aa18.14■□□□□ 0.49
VPS53-216ENST00000574029 MSRB3Q8IXL7 192 aa18.14■□□□□ 0.49
VPS53-216ENST00000574029 C10orf111Q8N326 155 aa18.14■□□□□ 0.49
VPS53-216ENST00000574029 DYDC1Q8WWB3 177 aa18.14■□□□□ 0.49
VPS53-216ENST00000574029 EPYCQ99645 322 aa18.14■□□□□ 0.49
VPS53-216ENST00000574029 SPATA5L1Q9BVQ7 753 aa18.14■□□□□ 0.49
VPS53-216ENST00000574029 MS4A5Q9H3V2 200 aa18.14■□□□□ 0.49
VPS53-216ENST00000574029 B3GAT2Q9NPZ5 323 aa18.14■□□□□ 0.49
VPS53-216ENST00000574029 ZNF224Q9NZL3 707 aa18.14■□□□□ 0.49
VPS53-216ENST00000574029 REV1Q9UBZ9 1251 aa18.14■□□□□ 0.49
VPS53-216ENST00000574029 TESQ9UGI8 421 aaKnown RBP18.14■□□□□ 0.49
Retrieved 100 of 20,778 RNA–protein pairs in 39.2 ms