RNA–Protein interactions for RNA: ENST00000572607.1

VPS53-214, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 732 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-214ENST00000572607 NUDT2P50583 147 aa7.11□□□□□ -1.27
VPS53-214ENST00000572607 GZMMP51124 257 aa7.11□□□□□ -1.27
VPS53-214ENST00000572607 CDH11P55287 796 aa7.11□□□□□ -1.27
VPS53-214ENST00000572607 ADAM8P78325 824 aa7.11□□□□□ -1.27
VPS53-214ENST00000572607 POU3F1Q03052 451 aaPredicted RBP7.11□□□□□ -1.27
VPS53-214ENST00000572607 PUDPQ08623 228 aa7.11□□□□□ -1.27
VPS53-214ENST00000572607 FOXD4Q12950 439 aaPredicted RBP7.11□□□□□ -1.27
VPS53-214ENST00000572607 ZNF672Q499Z4 452 aaPredicted RBP7.11□□□□□ -1.27
VPS53-214ENST00000572607 Q5PR19 223 aa7.11□□□□□ -1.27
VPS53-214ENST00000572607 SLC22A25Q6T423 547 aa7.11□□□□□ -1.27
VPS53-214ENST00000572607 DEF8Q6ZN54 512 aa7.11□□□□□ -1.27
VPS53-214ENST00000572607 HIST3H2AQ7L7L0 130 aa7.11□□□□□ -1.27
VPS53-214ENST00000572607 LSRQ86X29 649 aaPredicted RBP7.11□□□□□ -1.27
VPS53-214ENST00000572607 CARM1Q86X55 608 aa7.11□□□□□ -1.27
VPS53-214ENST00000572607 ZIC4Q8N9L1 334 aa7.11□□□□□ -1.27
VPS53-214ENST00000572607 KBTBD8Q8NFY9 601 aa7.11□□□□□ -1.27
VPS53-214ENST00000572607 OR5J2Q8NH18 312 aa7.11□□□□□ -1.27
VPS53-214ENST00000572607 ADAMTS16Q8TE57 1224 aa7.11□□□□□ -1.27
VPS53-214ENST00000572607 SMAP2Q8WU79 429 aaPredicted RBP7.11□□□□□ -1.27
VPS53-214ENST00000572607 HIST1H2ACQ93077 130 aa7.11□□□□□ -1.27
VPS53-214ENST00000572607 TRMT61AQ96FX7 289 aaKnown RBP7.11□□□□□ -1.27
VPS53-214ENST00000572607 SLC41A3Q96GZ6 507 aa7.11□□□□□ -1.27
VPS53-214ENST00000572607 KCNS3Q9BQ31 491 aa7.11□□□□□ -1.27
VPS53-214ENST00000572607 RSPO3Q9BXY4 272 aaPredicted RBP7.11□□□□□ -1.27
VPS53-214ENST00000572607 LINC00470Q9BZP3 86 aa7.11□□□□□ -1.27
VPS53-214ENST00000572607 SLC19A3Q9BZV2 496 aa7.11□□□□□ -1.27
VPS53-214ENST00000572607 FKRPQ9H9S5 495 aa7.11□□□□□ -1.27
VPS53-214ENST00000572607 SLC17A5Q9NRA2 495 aa7.11□□□□□ -1.27
VPS53-214ENST00000572607 MRPL39Q9NYK5 338 aaKnown RBP7.11□□□□□ -1.27
VPS53-214ENST00000572607 CISD1Q9NZ45 108 aaKnown RBP7.11□□□□□ -1.27
VPS53-214ENST00000572607 SLC7A7Q9UM01 511 aa7.11□□□□□ -1.27
VPS53-214ENST00000572607 LAMP3Q9UQV4 416 aa7.11□□□□□ -1.27
VPS53-214ENST00000572607 NOX1Q9Y5S8 564 aa7.11□□□□□ -1.27
VPS53-214ENST00000572607 SLC25A15Q9Y619 301 aa7.11□□□□□ -1.27
VPS53-214ENST00000572607 FBN1P35555 2871 aaKnown RBP7.1□□□□□ -1.27
VPS53-214ENST00000572607 LOC102725191A0A1B0GVB3 256 aa7.1□□□□□ -1.27
VPS53-214ENST00000572607 GMNCA6NCL1 334 aa7.1□□□□□ -1.27
VPS53-214ENST00000572607 TPST2O60704 377 aa7.1□□□□□ -1.27
VPS53-214ENST00000572607 FZD7O75084 574 aa7.1□□□□□ -1.27
VPS53-214ENST00000572607 GMNNO75496 209 aa7.1□□□□□ -1.27
VPS53-214ENST00000572607 UPK3AO75631 287 aa7.1□□□□□ -1.27
VPS53-214ENST00000572607 SERPINI2O75830 405 aa7.1□□□□□ -1.27
VPS53-214ENST00000572607 OR5F1O95221 314 aa7.1□□□□□ -1.27
VPS53-214ENST00000572607 BGLAPP02818 100 aa7.1□□□□□ -1.27
VPS53-214ENST00000572607 ADORA3P0DMS8 318 aa7.1□□□□□ -1.27
VPS53-214ENST00000572607 FOSL1P15407 271 aa7.1□□□□□ -1.27
VPS53-214ENST00000572607 CD40P25942 277 aa7.1□□□□□ -1.27
VPS53-214ENST00000572607 KDELR2P33947 212 aa7.1□□□□□ -1.27
VPS53-214ENST00000572607 PTH2RP49190 550 aa7.1□□□□□ -1.27
VPS53-214ENST00000572607 SLC7A2P52569 658 aa7.1□□□□□ -1.27
VPS53-214ENST00000572607 FOXG1P55316 489 aaPredicted RBP7.1□□□□□ -1.27
VPS53-214ENST00000572607 ROR2Q01974 943 aaKnown RBP7.1□□□□□ -1.27
VPS53-214ENST00000572607 LIPEQ05469 1076 aa7.1□□□□□ -1.27
VPS53-214ENST00000572607 NPTX1Q15818 432 aa7.1□□□□□ -1.27
VPS53-214ENST00000572607 TBRG1Q3YBR2 411 aa7.1□□□□□ -1.27
VPS53-214ENST00000572607 CYBRD1Q53TN4 286 aa7.1□□□□□ -1.27
VPS53-214ENST00000572607 NANOGNBQ7Z5D8 188 aa7.1□□□□□ -1.27
VPS53-214ENST00000572607 YTHDF3Q7Z739 585 aaKnown RBP7.1□□□□□ -1.27
VPS53-214ENST00000572607 RBM45Q8IUH3 476 aaKnown RBP7.1□□□□□ -1.27
VPS53-214ENST00000572607 MICU2Q8IYU8 434 aa7.1□□□□□ -1.27
VPS53-214ENST00000572607 WFDC11Q8NEX6 87 aa7.1□□□□□ -1.27
VPS53-214ENST00000572607 OR1K1Q8NGR3 316 aa7.1□□□□□ -1.27
VPS53-214ENST00000572607 OR6N1Q8NGY5 312 aa7.1□□□□□ -1.27
VPS53-214ENST00000572607 TPD52L3Q96J77 140 aa7.1□□□□□ -1.27
VPS53-214ENST00000572607 ZNF583Q96ND8 569 aa7.1□□□□□ -1.27
VPS53-214ENST00000572607 WFDC6Q9BQY6 131 aa7.1□□□□□ -1.27
VPS53-214ENST00000572607 C1QTNF6Q9BXI9 259 aa7.1□□□□□ -1.27
VPS53-214ENST00000572607 GSX2Q9BZM3 304 aa7.1□□□□□ -1.27
VPS53-214ENST00000572607 AMBRA1Q9C0C7 1298 aa7.1□□□□□ -1.27
VPS53-214ENST00000572607 PCDHAC1Q9H158 963 aa7.1□□□□□ -1.27
VPS53-214ENST00000572607 BRD7Q9NPI1 651 aa7.1□□□□□ -1.27
VPS53-214ENST00000572607 NANSQ9NR45 359 aa7.1□□□□□ -1.27
VPS53-214ENST00000572607 NPAP1Q9NZP6 1156 aa7.1□□□□□ -1.27
VPS53-214ENST00000572607 B3GAT1Q9P2W7 334 aa7.1□□□□□ -1.27
VPS53-214ENST00000572607 SEC14L4Q9UDX3 406 aa7.1□□□□□ -1.27
VPS53-214ENST00000572607 ZNF229Q9UJW7 825 aa7.1□□□□□ -1.27
VPS53-214ENST00000572607 ATP23Q9Y6H3 246 aa7.1□□□□□ -1.27
VPS53-214ENST00000572607 RPL36A-HNRNPH2H7BZ11 118 aa7.09□□□□□ -1.27
VPS53-214ENST00000572607 M0R3G1 203 aa7.09□□□□□ -1.27
VPS53-214ENST00000572607 CXCR6O00574 342 aa7.09□□□□□ -1.27
VPS53-214ENST00000572607 PLPP3O14495 311 aa7.09□□□□□ -1.27
VPS53-214ENST00000572607 RNF13O43567 381 aa7.09□□□□□ -1.27
VPS53-214ENST00000572607 TRAF3IP2O43734 574 aaPredicted RBP7.09□□□□□ -1.27
VPS53-214ENST00000572607 ZNF682O95780 498 aa7.09□□□□□ -1.27
VPS53-214ENST00000572607 CH25HO95992 272 aa7.09□□□□□ -1.27
VPS53-214ENST00000572607 H2AFB1P0C5Y9 115 aa7.09□□□□□ -1.27
VPS53-214ENST00000572607 H2AFB2P0C5Z0 115 aa7.09□□□□□ -1.27
VPS53-214ENST00000572607 THRBP10828 461 aa7.09□□□□□ -1.27
VPS53-214ENST00000572607 PRDX6P30041 224 aa7.09□□□□□ -1.27
VPS53-214ENST00000572607 LSP1P33241 339 aa7.09□□□□□ -1.27
VPS53-214ENST00000572607 RBM34P42696 430 aaKnown RBP7.09□□□□□ -1.27
VPS53-214ENST00000572607 CAPZA2P47755 286 aa7.09□□□□□ -1.27
VPS53-214ENST00000572607 SEC24CP53992 1094 aa7.09□□□□□ -1.27
VPS53-214ENST00000572607 ATP5J2P56134 94 aa7.09□□□□□ -1.27
VPS53-214ENST00000572607 PSMA6P60900 246 aaKnown RBP7.09□□□□□ -1.27
VPS53-214ENST00000572607 GNGT1P63211 74 aa7.09□□□□□ -1.27
VPS53-214ENST00000572607 ZNF74Q16587 644 aa7.09□□□□□ -1.27
VPS53-214ENST00000572607 HIKESHIQ53FT3 197 aa7.09□□□□□ -1.27
VPS53-214ENST00000572607 AGAP6Q5VW22 663 aa7.09□□□□□ -1.27
VPS53-214ENST00000572607 CARD17Q5XLA6 110 aa7.09□□□□□ -1.27
Retrieved 100 of 20,778 RNA–protein pairs in 21.4 ms