RNA–Protein interactions for RNA: ENST00000572259.1

VPS53-212, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 683 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-212ENST00000572259 GRB7Q14451 532 aa5.44□□□□□ -1.54
VPS53-212ENST00000572259 FASTKD3Q14CZ7 662 aaKnown RBP5.44□□□□□ -1.54
VPS53-212ENST00000572259 RAB11BQ15907 218 aa5.44□□□□□ -1.54
VPS53-212ENST00000572259 RBBP7Q16576 425 aa5.44□□□□□ -1.54
VPS53-212ENST00000572259 NDUFA9Q16795 377 aa5.44□□□□□ -1.54
VPS53-212ENST00000572259 TMEM44Q2T9K0 475 aa5.44□□□□□ -1.54
VPS53-212ENST00000572259 LGSNQ5TDP6 509 aa5.44□□□□□ -1.54
VPS53-212ENST00000572259 LCN10Q6JVE6 187 aa5.44□□□□□ -1.54
VPS53-212ENST00000572259 SLC25A25Q6KCM7 469 aa5.44□□□□□ -1.54
VPS53-212ENST00000572259 AGTRAPQ6RW13 159 aa5.44□□□□□ -1.54
VPS53-212ENST00000572259 IGSF10Q6WRI0 2623 aa5.44□□□□□ -1.54
VPS53-212ENST00000572259 PIWIL4Q7Z3Z4 852 aaKnown RBP5.44□□□□□ -1.54
VPS53-212ENST00000572259 GPR141Q7Z602 305 aa5.44□□□□□ -1.54
VPS53-212ENST00000572259 TMPRSS11BQ86T26 416 aa5.44□□□□□ -1.54
VPS53-212ENST00000572259 SERPINA11Q86U17 422 aa5.44□□□□□ -1.54
VPS53-212ENST00000572259 C17orf64Q86WR6 236 aa5.44□□□□□ -1.54
VPS53-212ENST00000572259 RAB43Q86YS6 212 aa5.44□□□□□ -1.54
VPS53-212ENST00000572259 MICU2Q8IYU8 434 aa5.44□□□□□ -1.54
VPS53-212ENST00000572259 SPATA6LQ8N4H0 392 aa5.44□□□□□ -1.54
VPS53-212ENST00000572259 FNDC5Q8NAU1 212 aa5.44□□□□□ -1.54
VPS53-212ENST00000572259 SYT14Q8NB59 555 aa5.44□□□□□ -1.54
VPS53-212ENST00000572259 SLC38A9Q8NBW4 561 aa5.44□□□□□ -1.54
VPS53-212ENST00000572259 OR2A1Q8NGT9 310 aa5.44□□□□□ -1.54
VPS53-212ENST00000572259 OR6S1Q8NH40 331 aa5.44□□□□□ -1.54
VPS53-212ENST00000572259 FLVCR1-AS1Q8TAF5 88 aa5.44□□□□□ -1.54
VPS53-212ENST00000572259 NDNFQ8TB73 568 aa5.44□□□□□ -1.54
VPS53-212ENST00000572259 ZNF596Q8TC21 504 aa5.44□□□□□ -1.54
VPS53-212ENST00000572259 M1APQ8TC57 530 aa5.44□□□□□ -1.54
VPS53-212ENST00000572259 GRHL3Q8TE85 626 aa5.44□□□□□ -1.54
VPS53-212ENST00000572259 CT55Q8WUE5 264 aa5.44□□□□□ -1.54
VPS53-212ENST00000572259 APOBEC4Q8WW27 367 aaKnown RBP5.44□□□□□ -1.54
VPS53-212ENST00000572259 RFT1Q96AA3 541 aa5.44□□□□□ -1.54
VPS53-212ENST00000572259 DOCK10Q96BY6 2186 aa5.44□□□□□ -1.54
VPS53-212ENST00000572259 PYCR2Q96C36 320 aa5.44□□□□□ -1.54
VPS53-212ENST00000572259 MED8Q96G25 268 aa5.44□□□□□ -1.54
VPS53-212ENST00000572259 FMO2Q99518 471 aa5.44□□□□□ -1.54
VPS53-212ENST00000572259 RBBP8Q99708 897 aa5.44□□□□□ -1.54
VPS53-212ENST00000572259 ADNPQ9H2P0 1102 aa5.44□□□□□ -1.54
VPS53-212ENST00000572259 PPP1R3EQ9H7J1 279 aa5.44□□□□□ -1.54
VPS53-212ENST00000572259 FAM60AQ9NP50 221 aa5.44□□□□□ -1.54
VPS53-212ENST00000572259 CISD1Q9NZ45 108 aaKnown RBP5.44□□□□□ -1.54
VPS53-212ENST00000572259 PIPOXQ9P0Z9 390 aa5.44□□□□□ -1.54
VPS53-212ENST00000572259 TAC3Q9UHF0 121 aa5.44□□□□□ -1.54
VPS53-212ENST00000572259 PDE10AQ9Y233 779 aa5.44□□□□□ -1.54
VPS53-212ENST00000572259 NBASA2RRP1 2371 aa5.43□□□□□ -1.54
VPS53-212ENST00000572259 ATMQ13315 3056 aa5.43□□□□□ -1.54
VPS53-212ENST00000572259 A0A0J9YVX5 310 aa5.43□□□□□ -1.54
VPS53-212ENST00000572259 A0A1B0GX78 115 aa5.43□□□□□ -1.54
VPS53-212ENST00000572259 A0A1W2PPV9 198 aa5.43□□□□□ -1.54
VPS53-212ENST00000572259 HYKKA2RU49 373 aa5.43□□□□□ -1.54
VPS53-212ENST00000572259 CD8B2A6NJW9 211 aa5.43□□□□□ -1.54
VPS53-212ENST00000572259 SULT1B1O43704 296 aa5.43□□□□□ -1.54
VPS53-212ENST00000572259 SCGNO76038 276 aa5.43□□□□□ -1.54
VPS53-212ENST00000572259 F7P08709 466 aaPredicted RBP5.43□□□□□ -1.54
VPS53-212ENST00000572259 UQCRC2P22695 453 aa5.43□□□□□ -1.54
VPS53-212ENST00000572259 CXCR2P25025 360 aa5.43□□□□□ -1.54
VPS53-212ENST00000572259 IMPA1P29218 277 aa5.43□□□□□ -1.54
VPS53-212ENST00000572259 PEBP1P30086 187 aaKnown RBP5.43□□□□□ -1.54
VPS53-212ENST00000572259 SLC26A3P40879 764 aa5.43□□□□□ -1.54
VPS53-212ENST00000572259 SERPINB9P50453 376 aa5.43□□□□□ -1.54
VPS53-212ENST00000572259 VSX2P58304 361 aaPredicted RBP5.43□□□□□ -1.54
VPS53-212ENST00000572259 TAS2R39P59534 338 aa5.43□□□□□ -1.54
VPS53-212ENST00000572259 RAB10P61026 200 aa5.43□□□□□ -1.54
VPS53-212ENST00000572259 HERV-K104P63124 156 aa5.43□□□□□ -1.54
VPS53-212ENST00000572259 TUBA1BP68363 451 aa5.43□□□□□ -1.54
VPS53-212ENST00000572259 CDKL1Q00532 357 aa5.43□□□□□ -1.54
VPS53-212ENST00000572259 CDC20Q12834 499 aa5.43□□□□□ -1.54
VPS53-212ENST00000572259 GPS2Q13227 327 aa5.43□□□□□ -1.54
VPS53-212ENST00000572259 CYLC2Q14093 348 aaPredicted RBP5.43□□□□□ -1.54
VPS53-212ENST00000572259 FASTKQ14296 549 aaKnown RBP5.43□□□□□ -1.54
VPS53-212ENST00000572259 GNA13Q14344 377 aa5.43□□□□□ -1.54
VPS53-212ENST00000572259 HERC3Q15034 1050 aa5.43□□□□□ -1.54
VPS53-212ENST00000572259 P2RY14Q15391 338 aa5.43□□□□□ -1.54
VPS53-212ENST00000572259 ZIC1Q15915 447 aa5.43□□□□□ -1.54
VPS53-212ENST00000572259 UAP1Q16222 522 aaPredicted RBP5.43□□□□□ -1.54
VPS53-212ENST00000572259 DEFB110Q30KQ9 67 aa5.43□□□□□ -1.54
VPS53-212ENST00000572259 DEFB109BQ30KR1 87 aa5.43□□□□□ -1.54
VPS53-212ENST00000572259 CCSMST1Q4G0I0 132 aa5.43□□□□□ -1.54
VPS53-212ENST00000572259 CDKL4Q5MAI5 379 aa5.43□□□□□ -1.54
VPS53-212ENST00000572259 WASHC2DQ5SRD0 308 aa5.43□□□□□ -1.54
VPS53-212ENST00000572259 NIPAL1Q6NVV3 410 aa5.43□□□□□ -1.54
VPS53-212ENST00000572259 TMEM53Q6P2H8 277 aa5.43□□□□□ -1.54
VPS53-212ENST00000572259 PRMT9Q6P2P2 845 aa5.43□□□□□ -1.54
VPS53-212ENST00000572259 FAM199XQ6PEV8 388 aaPredicted RBP5.43□□□□□ -1.54
VPS53-212ENST00000572259 TUBA1AQ71U36 451 aa5.43□□□□□ -1.54
VPS53-212ENST00000572259 SSX9Q7RTT3 188 aa5.43□□□□□ -1.54
VPS53-212ENST00000572259 LHFPL4Q7Z7J7 247 aa5.43□□□□□ -1.54
VPS53-212ENST00000572259 GPSM1Q86YR5 675 aa5.43□□□□□ -1.54
VPS53-212ENST00000572259 TGIF2LXQ8IUE1 241 aa5.43□□□□□ -1.54
VPS53-212ENST00000572259 STAG3L4Q8TBR4 150 aa5.43□□□□□ -1.54
VPS53-212ENST00000572259 UBTD2Q8WUN7 234 aa5.43□□□□□ -1.54
VPS53-212ENST00000572259 SSMEM1Q8WWF3 244 aa5.43□□□□□ -1.54
VPS53-212ENST00000572259 RAB39BQ96DA2 213 aa5.43□□□□□ -1.54
VPS53-212ENST00000572259 SENP5Q96HI0 755 aaPredicted RBP5.43□□□□□ -1.54
VPS53-212ENST00000572259 LURAP1Q96LR2 239 aa5.43□□□□□ -1.54
VPS53-212ENST00000572259 PRAP1Q96NZ9 151 aa5.43□□□□□ -1.54
VPS53-212ENST00000572259 SIGLEC11Q96RL6 698 aa5.43□□□□□ -1.54
VPS53-212ENST00000572259 GPR22Q99680 433 aa5.43□□□□□ -1.54
VPS53-212ENST00000572259 NRTNQ99748 197 aa5.43□□□□□ -1.54
VPS53-212ENST00000572259 PRRG4Q9BZD6 226 aa5.43□□□□□ -1.54
Retrieved 100 of 20,778 RNA–protein pairs in 36.6 ms