RNA–Protein interactions for RNA: ENST00000570062.1

VPS39-213, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 842 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-213ENST00000570062 TLE3Q04726 772 aa7.19□□□□□ -1.26
VPS39-213ENST00000570062 RPL18Q07020 188 aaKnown RBP7.19□□□□□ -1.26
VPS39-213ENST00000570062 PUDPQ08623 228 aa7.19□□□□□ -1.26
VPS39-213ENST00000570062 FHL1Q13642 323 aa7.19□□□□□ -1.26
VPS39-213ENST00000570062 CRMP1Q14194 572 aa7.19□□□□□ -1.26
VPS39-213ENST00000570062 TOMM34Q15785 309 aaPredicted RBP7.19□□□□□ -1.26
VPS39-213ENST00000570062 KLHL12Q53G59 568 aa7.19□□□□□ -1.26
VPS39-213ENST00000570062 ZNF362Q5T0B9 420 aaPredicted RBP7.19□□□□□ -1.26
VPS39-213ENST00000570062 SLC35F1Q5T1Q4 408 aa7.19□□□□□ -1.26
VPS39-213ENST00000570062 ZNF468Q5VIY5 522 aaPredicted RBP7.19□□□□□ -1.26
VPS39-213ENST00000570062 FOXB2Q5VYV0 432 aa7.19□□□□□ -1.26
VPS39-213ENST00000570062 ASB18Q6ZVZ8 466 aa7.19□□□□□ -1.26
VPS39-213ENST00000570062 FAM122BQ7Z309 247 aa7.19□□□□□ -1.26
VPS39-213ENST00000570062 SYS1Q8N2H4 156 aa7.19□□□□□ -1.26
VPS39-213ENST00000570062 LRRC17Q8N6Y2 441 aa7.19□□□□□ -1.26
VPS39-213ENST00000570062 WDSUB1Q8N9V3 476 aa7.19□□□□□ -1.26
VPS39-213ENST00000570062 LRRC75AQ8NAA5 344 aa7.19□□□□□ -1.26
VPS39-213ENST00000570062 KBTBD8Q8NFY9 601 aa7.19□□□□□ -1.26
VPS39-213ENST00000570062 UFD1Q92890 307 aa7.19□□□□□ -1.26
VPS39-213ENST00000570062 C12orf43Q96C57 262 aaKnown RBP7.19□□□□□ -1.26
VPS39-213ENST00000570062 SLC25A36Q96CQ1 311 aa7.19□□□□□ -1.26
VPS39-213ENST00000570062 ADAD1Q96M93 576 aaKnown RBP7.19□□□□□ -1.26
VPS39-213ENST00000570062 KATNB1Q9BVA0 655 aa7.19□□□□□ -1.26
VPS39-213ENST00000570062 PTDSS2Q9BVG9 487 aa7.19□□□□□ -1.26
VPS39-213ENST00000570062 GALNT9Q9HCQ5 603 aa7.19□□□□□ -1.26
VPS39-213ENST00000570062 ZFP64Q9NPA5 681 aa7.19□□□□□ -1.26
VPS39-213ENST00000570062 TIGARQ9NQ88 270 aa7.19□□□□□ -1.26
VPS39-213ENST00000570062 QPCTLQ9NXS2 382 aa7.19□□□□□ -1.26
VPS39-213ENST00000570062 LRFN1Q9P244 771 aa7.19□□□□□ -1.26
VPS39-213ENST00000570062 DKKL1Q9UK85 242 aa7.19□□□□□ -1.26
VPS39-213ENST00000570062 RASD1Q9Y272 281 aa7.19□□□□□ -1.26
VPS39-213ENST00000570062 VDAC3Q9Y277 283 aa7.19□□□□□ -1.26
VPS39-213ENST00000570062 GSTK1Q9Y2Q3 226 aa7.19□□□□□ -1.26
VPS39-213ENST00000570062 GPR52Q9Y2T5 361 aa7.19□□□□□ -1.26
VPS39-213ENST00000570062 KLF13Q9Y2Y9 288 aaPredicted RBP7.19□□□□□ -1.26
VPS39-213ENST00000570062 FKBP7Q9Y680 259 aa7.19□□□□□ -1.26
VPS39-213ENST00000570062 A3GALT2U3KPV4 340 aa7.19□□□□□ -1.26
VPS39-213ENST00000570062 ASPMQ8IZT6 3477 aa7.18□□□□□ -1.26
VPS39-213ENST00000570062 LIPT2A6NK58 231 aa7.18□□□□□ -1.26
VPS39-213ENST00000570062 ZNF891A8MT65 544 aaPredicted RBP7.18□□□□□ -1.26
VPS39-213ENST00000570062 MCIDASD6RGH6 385 aa7.18□□□□□ -1.26
VPS39-213ENST00000570062 NPIPA5E9PKD4 350 aa7.18□□□□□ -1.26
VPS39-213ENST00000570062 H3BMQ9 156 aa7.18□□□□□ -1.26
VPS39-213ENST00000570062 AIREO43918 545 aa7.18□□□□□ -1.26
VPS39-213ENST00000570062 TMCC2O75069 709 aa7.18□□□□□ -1.26
VPS39-213ENST00000570062 MT-ND5P03915 603 aa7.18□□□□□ -1.26
VPS39-213ENST00000570062 CD1AP06126 327 aa7.18□□□□□ -1.26
VPS39-213ENST00000570062 SBK2P0C263 348 aa7.18□□□□□ -1.26
VPS39-213ENST00000570062 GAAP10253 952 aa7.18□□□□□ -1.26
VPS39-213ENST00000570062 CPEP16870 476 aa7.18□□□□□ -1.26
VPS39-213ENST00000570062 SLC2A5P22732 501 aa7.18□□□□□ -1.26
VPS39-213ENST00000570062 AHCYP23526 432 aa7.18□□□□□ -1.26
VPS39-213ENST00000570062 GRPRP30550 384 aa7.18□□□□□ -1.26
VPS39-213ENST00000570062 MAP2K4P45985 399 aa7.18□□□□□ -1.26
VPS39-213ENST00000570062 SLC16A1P53985 500 aa7.18□□□□□ -1.26
VPS39-213ENST00000570062 ERVK-25P63136 954 aa7.18□□□□□ -1.26
VPS39-213ENST00000570062 LTBQ06643 244 aa7.18□□□□□ -1.26
VPS39-213ENST00000570062 PIGFQ07326 219 aa7.18□□□□□ -1.26
VPS39-213ENST00000570062 FOXF1Q12946 379 aa7.18□□□□□ -1.26
VPS39-213ENST00000570062 DYNC1I2Q13409 638 aaKnown RBP7.18□□□□□ -1.26
VPS39-213ENST00000570062 KRR1Q13601 381 aaKnown RBP7.18□□□□□ -1.26
VPS39-213ENST00000570062 TPBGQ13641 420 aa7.18□□□□□ -1.26
VPS39-213ENST00000570062 ATP1A4Q13733 1029 aa7.18□□□□□ -1.26
VPS39-213ENST00000570062 GALEQ14376 348 aa7.18□□□□□ -1.26
VPS39-213ENST00000570062 DGUOKQ16854 277 aa7.18□□□□□ -1.26
VPS39-213ENST00000570062 CCDC58Q4VC31 144 aa7.18□□□□□ -1.26
VPS39-213ENST00000570062 SLC6A19Q695T7 634 aa7.18□□□□□ -1.26
VPS39-213ENST00000570062 OR5M10Q6IEU7 315 aa7.18□□□□□ -1.26
VPS39-213ENST00000570062 ZNF544Q6NX49 715 aa7.18□□□□□ -1.26
VPS39-213ENST00000570062 LEG1Q6P5S2 330 aa7.18□□□□□ -1.26
VPS39-213ENST00000570062 POMZP3Q6PJE2 187 aa7.18□□□□□ -1.26
VPS39-213ENST00000570062 C19orf48Q6RUI8 117 aa7.18□□□□□ -1.26
VPS39-213ENST00000570062 PAQR6Q6TCH4 344 aa7.18□□□□□ -1.26
VPS39-213ENST00000570062 TMPPEQ6ZT21 453 aa7.18□□□□□ -1.26
VPS39-213ENST00000570062 USP43Q70EL4 1123 aa7.18□□□□□ -1.26
VPS39-213ENST00000570062 MEX3DQ86XN8 651 aaKnown RBP7.18□□□□□ -1.26
VPS39-213ENST00000570062 ZNF295-AS1Q8N0V1 137 aa7.18□□□□□ -1.26
VPS39-213ENST00000570062 GALNT16Q8N428 558 aa7.18□□□□□ -1.26
VPS39-213ENST00000570062 MS4A15Q8N5U1 240 aa7.18□□□□□ -1.26
VPS39-213ENST00000570062 AMER2Q8N7J2 671 aa7.18□□□□□ -1.26
VPS39-213ENST00000570062 PLPP7Q8NBV4 271 aa7.18□□□□□ -1.26
VPS39-213ENST00000570062 NPEPL1Q8NDH3 523 aa7.18□□□□□ -1.26
VPS39-213ENST00000570062 OR4K13Q8NH42 304 aa7.18□□□□□ -1.26
VPS39-213ENST00000570062 ZFAND2BQ8WV99 257 aa7.18□□□□□ -1.26
VPS39-213ENST00000570062 PSMF1Q92530 271 aa7.18□□□□□ -1.26
VPS39-213ENST00000570062 TM9SF4Q92544 642 aa7.18□□□□□ -1.26
VPS39-213ENST00000570062 THRSPQ92748 146 aa7.18□□□□□ -1.26
VPS39-213ENST00000570062 HAS2Q92819 552 aa7.18□□□□□ -1.26
VPS39-213ENST00000570062 MIB2Q96AX9 1013 aa7.18□□□□□ -1.26
VPS39-213ENST00000570062 INTS12Q96CB8 462 aaKnown RBP7.18□□□□□ -1.26
VPS39-213ENST00000570062 NMD3Q96D46 503 aaKnown RBP7.18□□□□□ -1.26
VPS39-213ENST00000570062 C5orf34Q96MH7 638 aa7.18□□□□□ -1.26
VPS39-213ENST00000570062 MOGAT1Q96PD6 335 aa7.18□□□□□ -1.26
VPS39-213ENST00000570062 PSMG3-AS1Q96PY0 264 aa7.18□□□□□ -1.26
VPS39-213ENST00000570062 RBP7Q96R05 134 aa7.18□□□□□ -1.26
VPS39-213ENST00000570062 CNN2Q99439 309 aaKnown RBP7.18□□□□□ -1.26
VPS39-213ENST00000570062 DDOQ99489 341 aa7.18□□□□□ -1.26
VPS39-213ENST00000570062 ALG12Q9BV10 488 aa7.18□□□□□ -1.26
VPS39-213ENST00000570062 NMNAT2Q9BZQ4 307 aa7.18□□□□□ -1.26
VPS39-213ENST00000570062 YIPF3Q9GZM5 350 aa7.18□□□□□ -1.26
Retrieved 100 of 20,778 RNA–protein pairs in 30.3 ms