RNA–Protein interactions for RNA: ENST00000567963.6

CLN3-229, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,452 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-229ENST00000567963 PHC2Q8IXK0 858 aa13.93□□□□□ -0.18
CLN3-229ENST00000567963 RNF217Q8TC41 542 aa13.93□□□□□ -0.18
CLN3-229ENST00000567963 TMEM158Q8WZ71 300 aa13.93□□□□□ -0.18
CLN3-229ENST00000567963 EPYCQ99645 322 aa13.93□□□□□ -0.18
CLN3-229ENST00000567963 ZNF442Q9H7R0 627 aa13.93□□□□□ -0.18
CLN3-229ENST00000567963 SELENONQ9NZV5 590 aa13.93□□□□□ -0.18
CLN3-229ENST00000567963 LPAR3Q9UBY5 353 aa13.93□□□□□ -0.18
CLN3-229ENST00000567963 FBXO9Q9UK97 447 aaPredicted RBP13.93□□□□□ -0.18
CLN3-229ENST00000567963 CORINQ9Y5Q5 1042 aa13.93□□□□□ -0.18
CLN3-229ENST00000567963 IGHV2OR16-5A0A0B4J2B6 119 aa13.93□□□□□ -0.18
CLN3-229ENST00000567963 VSTM5A8MXK1 200 aa13.93□□□□□ -0.18
CLN3-229ENST00000567963 M0R3G1 203 aa13.93□□□□□ -0.18
CLN3-229ENST00000567963 SERPINB7O75635 380 aa13.93□□□□□ -0.18
CLN3-229ENST00000567963 BGLAPP02818 100 aa13.93□□□□□ -0.18
CLN3-229ENST00000567963 AQP1P29972 269 aa13.93□□□□□ -0.18
CLN3-229ENST00000567963 THBS4P35443 961 aa13.93□□□□□ -0.18
CLN3-229ENST00000567963 ATP4BP51164 291 aa13.93□□□□□ -0.18
CLN3-229ENST00000567963 RGS8P57771 180 aaPredicted RBP13.93□□□□□ -0.18
CLN3-229ENST00000567963 CARTPTQ16568 116 aa13.93□□□□□ -0.18
CLN3-229ENST00000567963 DLEU7Q6UYE1 221 aa13.93□□□□□ -0.18
CLN3-229ENST00000567963 NHLRC1Q6VVB1 395 aa13.93□□□□□ -0.18
CLN3-229ENST00000567963 MDP1Q86V88 176 aa13.93□□□□□ -0.18
CLN3-229ENST00000567963 C20orf196Q8IYI0 205 aa13.93□□□□□ -0.18
CLN3-229ENST00000567963 ARIH2OSQ8N7S6 290 aa13.93□□□□□ -0.18
CLN3-229ENST00000567963 SCAIQ8N9R8 606 aa13.93□□□□□ -0.18
CLN3-229ENST00000567963 HIPK4Q8NE63 616 aa13.93□□□□□ -0.18
CLN3-229ENST00000567963 IL17RDQ8NFM7 739 aa13.93□□□□□ -0.18
CLN3-229ENST00000567963 LRR1Q96L50 414 aa13.93□□□□□ -0.18
CLN3-229ENST00000567963 DOK1Q99704 481 aa13.93□□□□□ -0.18
CLN3-229ENST00000567963 EMC6Q9BV81 110 aa13.93□□□□□ -0.18
CLN3-229ENST00000567963 REPIN1Q9BWE0 567 aaKnown RBP13.93□□□□□ -0.18
CLN3-229ENST00000567963 SHARPINQ9H0F6 387 aa13.93□□□□□ -0.18
CLN3-229ENST00000567963 RAB1BQ9H0U4 201 aa13.93□□□□□ -0.18
CLN3-229ENST00000567963 NIPSNAP3AQ9UFN0 247 aaPredicted RBP13.93□□□□□ -0.18
CLN3-229ENST00000567963 IGHV4-61A0A0C4DH41 118 aa13.92□□□□□ -0.18
CLN3-229ENST00000567963 TMEM129A0AVI4 362 aa13.92□□□□□ -0.18
CLN3-229ENST00000567963 SLC35F4A4IF30 521 aa13.92□□□□□ -0.18
CLN3-229ENST00000567963 SEC14L2O76054 403 aa13.92□□□□□ -0.18
CLN3-229ENST00000567963 MFN2O95140 757 aa13.92□□□□□ -0.18
CLN3-229ENST00000567963 NPR2P20594 1047 aa13.92□□□□□ -0.18
CLN3-229ENST00000567963 CAPZA2P47755 286 aa13.92□□□□□ -0.18
CLN3-229ENST00000567963 CDH12P55289 794 aa13.92□□□□□ -0.18
CLN3-229ENST00000567963 NPRL3Q12980 569 aa13.92□□□□□ -0.18
CLN3-229ENST00000567963 RUNDC3AQ59EK9 446 aa13.92□□□□□ -0.18
CLN3-229ENST00000567963 CARD17Q5XLA6 110 aa13.92□□□□□ -0.18
CLN3-229ENST00000567963 FAM166AQ6J272 317 aa13.92□□□□□ -0.18
CLN3-229ENST00000567963 ARMC8Q8IUR7 673 aa13.92□□□□□ -0.18
CLN3-229ENST00000567963 ZNF540Q8NDQ6 660 aa13.92□□□□□ -0.18
CLN3-229ENST00000567963 MSI2Q96DH6 328 aaKnown RBP13.92□□□□□ -0.18
CLN3-229ENST00000567963 TXNDC15Q96J42 360 aa13.92□□□□□ -0.18
CLN3-229ENST00000567963 ANKRD27Q96NW4 1050 aa13.92□□□□□ -0.18
CLN3-229ENST00000567963 MOGAT1Q96PD6 335 aa13.92□□□□□ -0.18
CLN3-229ENST00000567963 ASPNQ9BXN1 380 aa13.92□□□□□ -0.18
CLN3-229ENST00000567963 EVA1AQ9H8M9 152 aa13.92□□□□□ -0.18
CLN3-229ENST00000567963 MED29Q9NX70 200 aa13.92□□□□□ -0.18
CLN3-229ENST00000567963 B3GNT2Q9NY97 397 aa13.92□□□□□ -0.18
CLN3-229ENST00000567963 MRPL39Q9NYK5 338 aaKnown RBP13.92□□□□□ -0.18
CLN3-229ENST00000567963 SLC13A4Q9UKG4 626 aa13.92□□□□□ -0.18
CLN3-229ENST00000567963 USP22Q9UPT9 525 aa13.92□□□□□ -0.18
CLN3-229ENST00000567963 hCG_2039718K7EN88 272 aa13.91□□□□□ -0.18
CLN3-229ENST00000567963 PHF1O43189 567 aaPredicted RBP13.91□□□□□ -0.18
CLN3-229ENST00000567963 APEHP13798 732 aaKnown RBP13.91□□□□□ -0.18
CLN3-229ENST00000567963 POU3F1Q03052 451 aaPredicted RBP13.91□□□□□ -0.18
CLN3-229ENST00000567963 PUDPQ08623 228 aa13.91□□□□□ -0.18
CLN3-229ENST00000567963 PMS2P3Q13401 168 aa13.91□□□□□ -0.18
CLN3-229ENST00000567963 SQLEQ14534 574 aa13.91□□□□□ -0.18
CLN3-229ENST00000567963 IQCCQ4KMZ1 466 aa13.91□□□□□ -0.18
CLN3-229ENST00000567963 ZNF627Q7L945 461 aa13.91□□□□□ -0.18
CLN3-229ENST00000567963 PXKQ7Z7A4 578 aa13.91□□□□□ -0.18
CLN3-229ENST00000567963 RANBP3LQ86VV4 465 aaPredicted RBP13.91□□□□□ -0.18
CLN3-229ENST00000567963 ZCCHC24Q8N2G6 241 aaKnown RBP13.91□□□□□ -0.18
CLN3-229ENST00000567963 SMYD1Q8NB12 490 aa13.91□□□□□ -0.18
CLN3-229ENST00000567963 CPPED1Q9BRF8 314 aaPredicted RBP13.91□□□□□ -0.18
CLN3-229ENST00000567963 TMEM43Q9BTV4 400 aa13.91□□□□□ -0.18
CLN3-229ENST00000567963 BPESC1Q9GZL8 116 aa13.91□□□□□ -0.18
CLN3-229ENST00000567963 RABEP2Q9H5N1 569 aa13.91□□□□□ -0.18
CLN3-229ENST00000567963 NOX3Q9HBY0 568 aa13.91□□□□□ -0.18
CLN3-229ENST00000567963 KCNS2Q9ULS6 477 aa13.91□□□□□ -0.18
CLN3-229ENST00000567963 NOX1Q9Y5S8 564 aa13.91□□□□□ -0.18
CLN3-229ENST00000567963 LOC100289279A0A1B0GTE1 492 aa13.9□□□□□ -0.18
CLN3-229ENST00000567963 LRRN3E7EW58 273 aa13.9□□□□□ -0.18
CLN3-229ENST00000567963 PLPP3O14495 311 aa13.9□□□□□ -0.18
CLN3-229ENST00000567963 IGFBP5P24593 272 aa13.9□□□□□ -0.18
CLN3-229ENST00000567963 PCBP3P57721 371 aaKnown RBP13.9□□□□□ -0.18
CLN3-229ENST00000567963 DAG1Q14118 895 aa13.9□□□□□ -0.18
CLN3-229ENST00000567963 DUSP7Q16829 419 aa13.9□□□□□ -0.18
CLN3-229ENST00000567963 SWT1Q5T5J6 900 aaKnown RBP13.9□□□□□ -0.18
CLN3-229ENST00000567963 LINC00114Q6XXX2 140 aa13.9□□□□□ -0.18
CLN3-229ENST00000567963 SPATA21Q7Z572 469 aa13.9□□□□□ -0.18
CLN3-229ENST00000567963 PTOV1Q86YD1 416 aa13.9□□□□□ -0.18
CLN3-229ENST00000567963 WDFY1Q8IWB7 410 aa13.9□□□□□ -0.18
CLN3-229ENST00000567963 SVOPLQ8N434 492 aa13.9□□□□□ -0.18
CLN3-229ENST00000567963 NEU4Q8WWR8 484 aaPredicted RBP13.9□□□□□ -0.18
CLN3-229ENST00000567963 ATP6V1G3Q96LB4 118 aa13.9□□□□□ -0.18
CLN3-229ENST00000567963 ZNF75AQ96N20 296 aa13.9□□□□□ -0.18
CLN3-229ENST00000567963 B3GAT2Q9NPZ5 323 aa13.9□□□□□ -0.18
CLN3-229ENST00000567963 ANGPT4Q9Y264 503 aa13.9□□□□□ -0.18
CLN3-229ENST00000567963 STAB1Q9NY15 2570 aa13.9□□□□□ -0.18
CLN3-229ENST00000567963 SH3PXD2BA1X283 911 aa13.89□□□□□ -0.19
CLN3-229ENST00000567963 ZNF726A6NNF4 738 aa13.89□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 21.5 ms