RNA–Protein interactions for RNA: ENST00000566472.1

CLN3-223, Transcript of CLN3, battenin, human

TSL 4

Gene CLN3, Length 551 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CLN3-223	ENST00000566472	ONECUT2	O95948	504 aa		5.67	□□□□□ -1.5
CLN3-223	ENST00000566472	PAH	P00439	452 aa		5.67	□□□□□ -1.5
CLN3-223	ENST00000566472	SNRPB	P14678	240 aa	Known RBP	5.67	□□□□□ -1.5
CLN3-223	ENST00000566472	NAGA	P17050	411 aa		5.67	□□□□□ -1.5
CLN3-223	ENST00000566472	PRKCA	P17252	672 aa		5.67	□□□□□ -1.5
CLN3-223	ENST00000566472	SRM	P19623	302 aa		5.67	□□□□□ -1.5
CLN3-223	ENST00000566472	IGFBP4	P22692	258 aa		5.67	□□□□□ -1.5
CLN3-223	ENST00000566472	MAOB	P27338	520 aa		5.67	□□□□□ -1.5
CLN3-223	ENST00000566472	CSF2RB	P32927	897 aa		5.67	□□□□□ -1.5
CLN3-223	ENST00000566472	BTC	P35070	178 aa		5.67	□□□□□ -1.5
CLN3-223	ENST00000566472	PSMB10	P40306	273 aa		5.67	□□□□□ -1.5
CLN3-223	ENST00000566472	GZMK	P49863	264 aa		5.67	□□□□□ -1.5
CLN3-223	ENST00000566472	AFF3	P51826	1226 aa	Known RBP	5.67	□□□□□ -1.5
CLN3-223	ENST00000566472	NR0B1	P51843	470 aa	Known RBP	5.67	□□□□□ -1.5
CLN3-223	ENST00000566472	MAP2K6	P52564	334 aa		5.67	□□□□□ -1.5
CLN3-223	ENST00000566472	AGFG1	P52594	562 aa	Known RBP	5.67	□□□□□ -1.5
CLN3-223	ENST00000566472	HCCS	P53701	268 aa		5.67	□□□□□ -1.5
CLN3-223	ENST00000566472	RPL27	P61353	136 aa	Known RBP	5.67	□□□□□ -1.5
CLN3-223	ENST00000566472	ACY1	Q03154	408 aa		5.67	□□□□□ -1.5
CLN3-223	ENST00000566472	RASGEF1B	Q0VAM2	473 aa		5.67	□□□□□ -1.5
CLN3-223	ENST00000566472	ZP4	Q12836	540 aa		5.67	□□□□□ -1.5
CLN3-223	ENST00000566472	TNK1	Q13470	666 aa		5.67	□□□□□ -1.5
CLN3-223	ENST00000566472	KLF9	Q13886	244 aa	Predicted RBP	5.67	□□□□□ -1.5
CLN3-223	ENST00000566472	TOMM20	Q15388	145 aa		5.67	□□□□□ -1.5
CLN3-223	ENST00000566472	ANGPT1	Q15389	498 aa		5.67	□□□□□ -1.5
CLN3-223	ENST00000566472	SF3B4	Q15427	424 aa	Known RBP eCLIP	5.67	□□□□□ -1.5
CLN3-223	ENST00000566472	NSDHL	Q15738	373 aa		5.67	□□□□□ -1.5
CLN3-223	ENST00000566472	SLC36A2	Q495M3	483 aa		5.67	□□□□□ -1.5
CLN3-223	ENST00000566472	GXYLT1	Q4G148	440 aa		5.67	□□□□□ -1.5
CLN3-223	ENST00000566472	ELFN2	Q5R3F8	820 aa		5.67	□□□□□ -1.5
CLN3-223	ENST00000566472	NKAIN2	Q5VXU1	208 aa		5.67	□□□□□ -1.5
CLN3-223	ENST00000566472	CD276	Q5ZPR3	534 aa		5.67	□□□□□ -1.5
CLN3-223	ENST00000566472	FAM205BP	Q63HN1	556 aa		5.67	□□□□□ -1.5
CLN3-223	ENST00000566472	RHBDD2	Q6NTF9	364 aa		5.67	□□□□□ -1.5
CLN3-223	ENST00000566472	BTN2A1	Q7KYR7	527 aa		5.67	□□□□□ -1.5
CLN3-223	ENST00000566472	FGD2	Q7Z6J4	655 aa		5.67	□□□□□ -1.5
CLN3-223	ENST00000566472	GHDC	Q8N2G8	530 aa		5.67	□□□□□ -1.5
CLN3-223	ENST00000566472	YIPF7	Q8N8F6	280 aa		5.67	□□□□□ -1.5
CLN3-223	ENST00000566472	ZNF454	Q8N9F8	522 aa		5.67	□□□□□ -1.5
CLN3-223	ENST00000566472	OR51L1	Q8NGJ5	315 aa		5.67	□□□□□ -1.5
CLN3-223	ENST00000566472	OR5H6	Q8NGV6	325 aa		5.67	□□□□□ -1.5
CLN3-223	ENST00000566472	OR5AK2	Q8NH90	309 aa		5.67	□□□□□ -1.5
CLN3-223	ENST00000566472	ZNF417	Q8TAU3	575 aa		5.67	□□□□□ -1.5
CLN3-223	ENST00000566472	NUBPL	Q8TB37	319 aa		5.67	□□□□□ -1.5
CLN3-223	ENST00000566472	ZNF519	Q8TB69	540 aa		5.67	□□□□□ -1.5
CLN3-223	ENST00000566472	LGALS14	Q8TCE9	139 aa		5.67	□□□□□ -1.5
CLN3-223	ENST00000566472	SMAP2	Q8WU79	429 aa	Predicted RBP	5.67	□□□□□ -1.5
CLN3-223	ENST00000566472	RNF138	Q8WVD3	245 aa		5.67	□□□□□ -1.5
CLN3-223	ENST00000566472	ZDHHC19	Q8WVZ1	309 aa	Predicted RBP	5.67	□□□□□ -1.5
CLN3-223	ENST00000566472	ZNRF4	Q8WWF5	429 aa		5.67	□□□□□ -1.5
CLN3-223	ENST00000566472	TMEM234	Q8WY98	164 aa		5.67	□□□□□ -1.5
CLN3-223	ENST00000566472	ST8SIA1	Q92185	356 aa		5.67	□□□□□ -1.5
CLN3-223	ENST00000566472	RGP1	Q92546	391 aa	Predicted RBP	5.67	□□□□□ -1.5
CLN3-223	ENST00000566472	NSMAF	Q92636	917 aa		5.67	□□□□□ -1.5
CLN3-223	ENST00000566472	TAAR8	Q969N4	342 aa		5.67	□□□□□ -1.5
CLN3-223	ENST00000566472	RNF166	Q96A37	237 aa	Predicted RBP	5.67	□□□□□ -1.5
CLN3-223	ENST00000566472	CLDN23	Q96B33	292 aa		5.67	□□□□□ -1.5
CLN3-223	ENST00000566472	ZNF501	Q96CX3	271 aa	Predicted RBP	5.67	□□□□□ -1.5
CLN3-223	ENST00000566472	KTI12	Q96EK9	354 aa	Predicted RBP	5.67	□□□□□ -1.5
CLN3-223	ENST00000566472	MAP6	Q96JE9	813 aa		5.67	□□□□□ -1.5
CLN3-223	ENST00000566472	DMRTB1	Q96MA1	342 aa		5.67	□□□□□ -1.5
CLN3-223	ENST00000566472	OR8B4	Q96RC9	309 aa		5.67	□□□□□ -1.5
CLN3-223	ENST00000566472	ABHD1	Q96SE0	405 aa		5.67	□□□□□ -1.5
CLN3-223	ENST00000566472	DPYSL5	Q9BPU6	564 aa		5.67	□□□□□ -1.5
CLN3-223	ENST00000566472	PTDSS2	Q9BVG9	487 aa		5.67	□□□□□ -1.5
CLN3-223	ENST00000566472	SEMA4C	Q9C0C4	833 aa		5.67	□□□□□ -1.5
CLN3-223	ENST00000566472	VN1R1	Q9GZP7	353 aa		5.67	□□□□□ -1.5
CLN3-223	ENST00000566472	TTYH1	Q9H313	450 aa	Predicted RBP	5.67	□□□□□ -1.5
CLN3-223	ENST00000566472	TXNIP	Q9H3M7	391 aa		5.67	□□□□□ -1.5
CLN3-223	ENST00000566472	TCF7L1	Q9HCS4	588 aa		5.67	□□□□□ -1.5
CLN3-223	ENST00000566472	RANGRF	Q9HD47	186 aa	Predicted RBP	5.67	□□□□□ -1.5
CLN3-223	ENST00000566472	EMC7	Q9NPA0	242 aa		5.67	□□□□□ -1.5
CLN3-223	ENST00000566472	UCKL1	Q9NWZ5	548 aa		5.67	□□□□□ -1.5
CLN3-223	ENST00000566472	TAS2R10	Q9NYW0	307 aa		5.67	□□□□□ -1.5
CLN3-223	ENST00000566472	STMN3	Q9NZ72	180 aa		5.67	□□□□□ -1.5
CLN3-223	ENST00000566472	VSX1	Q9NZR4	365 aa	Predicted RBP	5.67	□□□□□ -1.5
CLN3-223	ENST00000566472	DHCR7	Q9UBM7	475 aa	Known RBP	5.67	□□□□□ -1.5
CLN3-223	ENST00000566472	LAMP5	Q9UJQ1	280 aa		5.67	□□□□□ -1.5
CLN3-223	ENST00000566472	ZNF346	Q9UL40	294 aa	Known RBP	5.67	□□□□□ -1.5
CLN3-223	ENST00000566472	PPIE	Q9UNP9	301 aa	Known RBP	5.67	□□□□□ -1.5
CLN3-223	ENST00000566472	AK6	Q9Y3D8	172 aa	Known RBP	5.67	□□□□□ -1.5
CLN3-223	ENST00000566472	BRCA2	P51587	3418 aa		5.66	□□□□□ -1.5
CLN3-223	ENST00000566472	TMED7-TICAM2	A0A0A6YYA0	188 aa		5.66	□□□□□ -1.5
CLN3-223	ENST00000566472		A0A1B0GVI7	797 aa		5.66	□□□□□ -1.5
CLN3-223	ENST00000566472		A0A1B0GVT2	93 aa		5.66	□□□□□ -1.5
CLN3-223	ENST00000566472	TMEM72	A0PK05	275 aa		5.66	□□□□□ -1.5
CLN3-223	ENST00000566472	PRSS37	A4D1T9	235 aa		5.66	□□□□□ -1.5
CLN3-223	ENST00000566472	ANKUB1	A6NFN9	424 aa		5.66	□□□□□ -1.5
CLN3-223	ENST00000566472		A6NIZ1	184 aa		5.66	□□□□□ -1.5
CLN3-223	ENST00000566472	ACOD1	A6NK06	481 aa		5.66	□□□□□ -1.5
CLN3-223	ENST00000566472	OR4C45	A6NMZ5	311 aa		5.66	□□□□□ -1.5
CLN3-223	ENST00000566472		A8MU76	341 aa		5.66	□□□□□ -1.5
CLN3-223	ENST00000566472		A8MV72	311 aa	Predicted RBP	5.66	□□□□□ -1.5
CLN3-223	ENST00000566472	PRR32	B1ATL7	298 aa		5.66	□□□□□ -1.5
CLN3-223	ENST00000566472	ETV2	O00321	342 aa	Predicted RBP	5.66	□□□□□ -1.5
CLN3-223	ENST00000566472	GPR171	O14626	319 aa		5.66	□□□□□ -1.5
CLN3-223	ENST00000566472	LANCL1	O43813	399 aa		5.66	□□□□□ -1.5
CLN3-223	ENST00000566472	SCO2	O43819	266 aa		5.66	□□□□□ -1.5
CLN3-223	ENST00000566472	SUSD5	O60279	629 aa		5.66	□□□□□ -1.5
CLN3-223	ENST00000566472	AKR7A3	O95154	331 aa		5.66	□□□□□ -1.5

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