RNA–Protein interactions for RNA: ENST00000565047.1

CLN3-213, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 461 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-213ENST00000565047 NCALDP61601 193 aa12.93□□□□□ -0.34
CLN3-213ENST00000565047 NAAAQ02083 359 aa12.93□□□□□ -0.34
CLN3-213ENST00000565047 CEACAM16Q2WEN9 425 aa12.93□□□□□ -0.34
CLN3-213ENST00000565047 HMBOX1Q6NT76 420 aa12.93□□□□□ -0.34
CLN3-213ENST00000565047 PXKQ7Z7A4 578 aa12.93□□□□□ -0.34
CLN3-213ENST00000565047 PRIMA1Q86XR5 153 aa12.93□□□□□ -0.34
CLN3-213ENST00000565047 FBXL14Q8N1E6 418 aa12.93□□□□□ -0.34
CLN3-213ENST00000565047 DEPDC4Q8N2C3 294 aa12.93□□□□□ -0.34
CLN3-213ENST00000565047 PIK3C3Q8NEB9 887 aa12.93□□□□□ -0.34
CLN3-213ENST00000565047 ADAMTS16Q8TE57 1224 aa12.93□□□□□ -0.34
CLN3-213ENST00000565047 EMC6Q9BV81 110 aa12.93□□□□□ -0.34
CLN3-213ENST00000565047 TAS2R5Q9NYW4 299 aa12.93□□□□□ -0.34
CLN3-213ENST00000565047 POU2F3Q9UKI9 436 aa12.93□□□□□ -0.34
CLN3-213ENST00000565047 ATP23Q9Y6H3 246 aa12.93□□□□□ -0.34
CLN3-213ENST00000565047 CPSF4LA6NMK7 179 aaKnown RBP12.92□□□□□ -0.34
CLN3-213ENST00000565047 ZNF99A8MXY4 864 aaPredicted RBP12.92□□□□□ -0.34
CLN3-213ENST00000565047 INAFM1C9JVW0 142 aa12.92□□□□□ -0.34
CLN3-213ENST00000565047 SSX4O60224 188 aa12.92□□□□□ -0.34
CLN3-213ENST00000565047 NPPAP01160 153 aa12.92□□□□□ -0.34
CLN3-213ENST00000565047 CECR9P0C854 216 aa12.92□□□□□ -0.34
CLN3-213ENST00000565047 CBR1P16152 277 aa12.92□□□□□ -0.34
CLN3-213ENST00000565047 HGFACQ04756 655 aa12.92□□□□□ -0.34
CLN3-213ENST00000565047 PUDPQ08623 228 aa12.92□□□□□ -0.34
CLN3-213ENST00000565047 ZP4Q12836 540 aa12.92□□□□□ -0.34
CLN3-213ENST00000565047 C1DQ13901 141 aaKnown RBP12.92□□□□□ -0.34
CLN3-213ENST00000565047 CYLC2Q14093 348 aaPredicted RBP12.92□□□□□ -0.34
CLN3-213ENST00000565047 ZNF74Q16587 644 aa12.92□□□□□ -0.34
CLN3-213ENST00000565047 REP15Q6BDI9 236 aa12.92□□□□□ -0.34
CLN3-213ENST00000565047 UEVLDQ8IX04 471 aa12.92□□□□□ -0.34
CLN3-213ENST00000565047 HTRA1Q92743 480 aa12.92□□□□□ -0.34
CLN3-213ENST00000565047 ADAD1Q96M93 576 aaKnown RBP12.92□□□□□ -0.34
CLN3-213ENST00000565047 ASPNQ9BXN1 380 aa12.92□□□□□ -0.34
CLN3-213ENST00000565047 MEPEQ9NQ76 525 aaPredicted RBP12.92□□□□□ -0.34
CLN3-213ENST00000565047 MED29Q9NX70 200 aa12.92□□□□□ -0.34
CLN3-213ENST00000565047 ZNF224Q9NZL3 707 aa12.92□□□□□ -0.34
CLN3-213ENST00000565047 SELENONQ9NZV5 590 aa12.92□□□□□ -0.34
CLN3-213ENST00000565047 SLC13A4Q9UKG4 626 aa12.92□□□□□ -0.34
CLN3-213ENST00000565047 NOX1Q9Y5S8 564 aa12.92□□□□□ -0.34
CLN3-213ENST00000565047 HEATR1Q9H583 2144 aaKnown RBP12.92□□□□□ -0.34
CLN3-213ENST00000565047 HIVEP2P31629 2446 aa12.91□□□□□ -0.34
CLN3-213ENST00000565047 TRAPPC13A5PLN9 417 aa12.91□□□□□ -0.34
CLN3-213ENST00000565047 CELA3BP08861 270 aa12.91□□□□□ -0.34
CLN3-213ENST00000565047 ASAH2BP0C7U1 165 aa12.91□□□□□ -0.34
CLN3-213ENST00000565047 UBE2NP61088 152 aaKnown RBP12.91□□□□□ -0.34
CLN3-213ENST00000565047 POU3F1Q03052 451 aaPredicted RBP12.91□□□□□ -0.34
CLN3-213ENST00000565047 PMS2P3Q13401 168 aa12.91□□□□□ -0.34
CLN3-213ENST00000565047 INTS11Q5TA45 600 aaKnown RBP12.91□□□□□ -0.34
CLN3-213ENST00000565047 KLHL24Q6TFL4 600 aa12.91□□□□□ -0.34
CLN3-213ENST00000565047 LRRC17Q8N6Y2 441 aa12.91□□□□□ -0.34
CLN3-213ENST00000565047 OR5J2Q8NH18 312 aa12.91□□□□□ -0.34
CLN3-213ENST00000565047 VANGL1Q8TAA9 524 aaPredicted RBP12.91□□□□□ -0.34
CLN3-213ENST00000565047 NANOS1Q8WY41 292 aaKnown RBP12.91□□□□□ -0.34
CLN3-213ENST00000565047 MPP4Q96JB8 637 aa12.91□□□□□ -0.34
CLN3-213ENST00000565047 HS6ST2Q96MM7 605 aa12.91□□□□□ -0.34
CLN3-213ENST00000565047 CA10Q9NS85 328 aa12.91□□□□□ -0.34
CLN3-213ENST00000565047 MRGBPQ9NV56 204 aa12.91□□□□□ -0.34
CLN3-213ENST00000565047 SLC7A7Q9UM01 511 aa12.91□□□□□ -0.34
CLN3-213ENST00000565047 ARFGEF3Q5TH69 2177 aa12.9□□□□□ -0.34
CLN3-213ENST00000565047 BBIP1A8MTZ0 92 aa12.9□□□□□ -0.34
CLN3-213ENST00000565047 M0R3G1 203 aa12.9□□□□□ -0.34
CLN3-213ENST00000565047 MRASO14807 208 aa12.9□□□□□ -0.34
CLN3-213ENST00000565047 F12P00748 615 aaPredicted RBP12.9□□□□□ -0.34
CLN3-213ENST00000565047 TSPAN19P0C672 248 aa12.9□□□□□ -0.34
CLN3-213ENST00000565047 TROVE2P10155 538 aaKnown RBP eCLIP12.9□□□□□ -0.34
CLN3-213ENST00000565047 NQO1P15559 274 aaKnown RBP12.9□□□□□ -0.34
CLN3-213ENST00000565047 PCSK6P29122 969 aa12.9□□□□□ -0.34
CLN3-213ENST00000565047 GUCY1A3Q02108 690 aa12.9□□□□□ -0.34
CLN3-213ENST00000565047 SF3A3Q12874 501 aaKnown RBP eCLIP12.9□□□□□ -0.34
CLN3-213ENST00000565047 RAB35Q15286 201 aa12.9□□□□□ -0.34
CLN3-213ENST00000565047 ADIPOQQ15848 244 aa12.9□□□□□ -0.34
CLN3-213ENST00000565047 SLC46A3Q7Z3Q1 461 aa12.9□□□□□ -0.34
CLN3-213ENST00000565047 GPR137CQ8N3F9 429 aa12.9□□□□□ -0.34
CLN3-213ENST00000565047 NUP37Q8NFH4 326 aa12.9□□□□□ -0.34
CLN3-213ENST00000565047 RNF217Q8TC41 542 aa12.9□□□□□ -0.34
CLN3-213ENST00000565047 C10orf82Q8WW14 230 aa12.9□□□□□ -0.34
CLN3-213ENST00000565047 RASSF5Q8WWW0 418 aa12.9□□□□□ -0.34
CLN3-213ENST00000565047 TMEM54Q969K7 222 aa12.9□□□□□ -0.34
CLN3-213ENST00000565047 SH3GL1Q99961 368 aa12.9□□□□□ -0.34
CLN3-213ENST00000565047 SLC19A3Q9BZV2 496 aa12.9□□□□□ -0.34
CLN3-213ENST00000565047 NOX3Q9HBY0 568 aa12.9□□□□□ -0.34
CLN3-213ENST00000565047 MOV10Q9HCE1 1003 aaKnown RBP12.9□□□□□ -0.34
CLN3-213ENST00000565047 ADAM21Q9UKJ8 722 aa12.9□□□□□ -0.34
CLN3-213ENST00000565047 ABCA2Q9BZC7 2435 aa12.9□□□□□ -0.34
CLN3-213ENST00000565047 LOC100653049A0A140TA62 436 aa12.89□□□□□ -0.35
CLN3-213ENST00000565047 TMEM129A0AVI4 362 aa12.89□□□□□ -0.35
CLN3-213ENST00000565047 AKAP8O43823 692 aaKnown RBP12.89□□□□□ -0.35
CLN3-213ENST00000565047 KRT34O76011 436 aa12.89□□□□□ -0.35
CLN3-213ENST00000565047 SEC14L2O76054 403 aa12.89□□□□□ -0.35
CLN3-213ENST00000565047 PDE5AO76074 875 aa12.89□□□□□ -0.35
CLN3-213ENST00000565047 LY6HO94772 140 aa12.89□□□□□ -0.35
CLN3-213ENST00000565047 CH25HO95992 272 aa12.89□□□□□ -0.35
CLN3-213ENST00000565047 IGF2P01344 180 aa12.89□□□□□ -0.35
CLN3-213ENST00000565047 CRYAAP02489 173 aa12.89□□□□□ -0.35
CLN3-213ENST00000565047 IGFBP1P08833 259 aaPredicted RBP12.89□□□□□ -0.35
CLN3-213ENST00000565047 TNFRSF1BP20333 461 aa12.89□□□□□ -0.35
CLN3-213ENST00000565047 ARR3P36575 388 aa12.89□□□□□ -0.35
CLN3-213ENST00000565047 EFNA4P52798 201 aa12.89□□□□□ -0.35
CLN3-213ENST00000565047 NUDT6P53370 316 aa12.89□□□□□ -0.35
CLN3-213ENST00000565047 CAMK2DQ13557 499 aa12.89□□□□□ -0.35
CLN3-213ENST00000565047 EFNB3Q15768 340 aa12.89□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 108 ms