RNA–Protein interactions for RNA: ENST00000564593.1

LINC00560-201, long intergenic non-protein coding RNA 560, humanhuman

TSL 1 (best) BASIC

Gene LINC00560, Length 1,599 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00560-201ENST00000564593 PDFQ9HBH1 243 aa3.29□□□□□ -1.88
LINC00560-201ENST00000564593 SGK2Q9HBY8 427 aa3.29□□□□□ -1.88
LINC00560-201ENST00000564593 HOXC10Q9NYD6 342 aa3.29□□□□□ -1.88
LINC00560-201ENST00000564593 TMCO1Q9UM00 188 aa3.29□□□□□ -1.88
LINC00560-201ENST00000564593 TRAF3IP3Q9Y228 551 aa3.29□□□□□ -1.88
LINC00560-201ENST00000564593 ASB3Q9Y575 518 aa3.29□□□□□ -1.88
LINC00560-201ENST00000564593 SIPA1L3O60292 1781 aaPredicted RBP3.29□□□□□ -1.88
LINC00560-201ENST00000564593 CRYBG1Q9Y4K1 1723 aa3.29□□□□□ -1.88
LINC00560-201ENST00000564593 NWD1Q149M9 1564 aa3.29□□□□□ -1.88
LINC00560-201ENST00000564593 CRB1P82279 1406 aa3.29□□□□□ -1.88
LINC00560-201ENST00000564593 IGHV3OR16-13A0A075B7E8 117 aa3.29□□□□□ -1.88
LINC00560-201ENST00000564593 IGHV1OR21-1A0A087WYE8 117 aa3.29□□□□□ -1.88
LINC00560-201ENST00000564593 A6NIZ1 184 aa3.29□□□□□ -1.88
LINC00560-201ENST00000564593 EMC8O43402 210 aa3.29□□□□□ -1.88
LINC00560-201ENST00000564593 HCRTR1O43613 425 aa3.29□□□□□ -1.88
LINC00560-201ENST00000564593 ZNF780AO75290 641 aaPredicted RBP3.29□□□□□ -1.88
LINC00560-201ENST00000564593 ACTL6AO96019 429 aa3.29□□□□□ -1.88
LINC00560-201ENST00000564593 UBTFL1P0CB47 393 aaPredicted RBP3.29□□□□□ -1.88
LINC00560-201ENST00000564593 NPR2P20594 1047 aa3.29□□□□□ -1.88
LINC00560-201ENST00000564593 DDOSTP39656 456 aa3.29□□□□□ -1.88
LINC00560-201ENST00000564593 KLK7P49862 253 aa3.29□□□□□ -1.88
LINC00560-201ENST00000564593 GPM6AP51674 278 aa3.29□□□□□ -1.88
LINC00560-201ENST00000564593 CRYBB1P53674 252 aaPredicted RBP3.29□□□□□ -1.88
LINC00560-201ENST00000564593 APOC4P55056 127 aa3.29□□□□□ -1.88
LINC00560-201ENST00000564593 RAP1BP61224 184 aa3.29□□□□□ -1.88
LINC00560-201ENST00000564593 ARFRP1Q13795 201 aa3.29□□□□□ -1.88
LINC00560-201ENST00000564593 VGLL4Q14135 290 aa3.29□□□□□ -1.88
LINC00560-201ENST00000564593 HERPUD1Q15011 391 aa3.29□□□□□ -1.88
LINC00560-201ENST00000564593 KLHL40Q2TBA0 621 aa3.29□□□□□ -1.88
LINC00560-201ENST00000564593 PARP15Q460N3 678 aa3.29□□□□□ -1.88
LINC00560-201ENST00000564593 FILIP1LQ4L180 1135 aa3.29□□□□□ -1.88
LINC00560-201ENST00000564593 BCL7AQ4VC05 210 aa3.29□□□□□ -1.88
LINC00560-201ENST00000564593 CARD16Q5EG05 197 aa3.29□□□□□ -1.88
LINC00560-201ENST00000564593 OTPQ5XKR4 325 aa3.29□□□□□ -1.88
LINC00560-201ENST00000564593 TIGD3Q6B0B8 471 aa3.29□□□□□ -1.88
LINC00560-201ENST00000564593 ZNF571Q7Z3V5 609 aaPredicted RBP3.29□□□□□ -1.88
LINC00560-201ENST00000564593 TRIM69Q86WT6 500 aa3.29□□□□□ -1.88
LINC00560-201ENST00000564593 CCDC71LQ8N9Z2 235 aa3.29□□□□□ -1.88
LINC00560-201ENST00000564593 ZNF740Q8NDX6 193 aa3.29□□□□□ -1.88
LINC00560-201ENST00000564593 BRSK1Q8TDC3 778 aa3.29□□□□□ -1.88
LINC00560-201ENST00000564593 UFD1Q92890 307 aa3.29□□□□□ -1.88
LINC00560-201ENST00000564593 TCEANC2Q96MN5 208 aa3.29□□□□□ -1.88
LINC00560-201ENST00000564593 ZIM3Q96PE6 472 aa3.29□□□□□ -1.88
LINC00560-201ENST00000564593 NPY6RQ99463 290 aa3.29□□□□□ -1.88
LINC00560-201ENST00000564593 MRPL45Q9BRJ2 306 aaKnown RBP3.29□□□□□ -1.88
LINC00560-201ENST00000564593 HYPKQ9NX55 129 aa3.29□□□□□ -1.88
LINC00560-201ENST00000564593 DCAF16Q9NXF7 216 aa3.29□□□□□ -1.88
LINC00560-201ENST00000564593 AFDNP55196 1824 aaKnown RBP3.29□□□□□ -1.88
LINC00560-201ENST00000564593 SCN11AQ9UI33 1791 aa3.29□□□□□ -1.88
LINC00560-201ENST00000564593 RGS12O14924 1447 aa3.28□□□□□ -1.88
LINC00560-201ENST00000564593 SPEF2Q9C093 1822 aa3.28□□□□□ -1.88
LINC00560-201ENST00000564593 MAP3K19Q56UN5 1328 aa3.28□□□□□ -1.88
LINC00560-201ENST00000564593 GOLGA8SH3BPF8 625 aa3.28□□□□□ -1.88
LINC00560-201ENST00000564593 ABCD4O14678 606 aa3.28□□□□□ -1.88
LINC00560-201ENST00000564593 CLDN9O95484 217 aa3.28□□□□□ -1.88
LINC00560-201ENST00000564593 TSPAN12O95859 305 aa3.28□□□□□ -1.88
LINC00560-201ENST00000564593 KLK3P07288 261 aaPredicted RBP3.28□□□□□ -1.88
LINC00560-201ENST00000564593 MX1P20591 662 aa3.28□□□□□ -1.88
LINC00560-201ENST00000564593 FUT3P21217 361 aa3.28□□□□□ -1.88
LINC00560-201ENST00000564593 COX7A1P24310 79 aa3.28□□□□□ -1.88
LINC00560-201ENST00000564593 MSNP26038 577 aaKnown RBP3.28□□□□□ -1.88
LINC00560-201ENST00000564593 NOVP48745 357 aa3.28□□□□□ -1.88
LINC00560-201ENST00000564593 CAV2P51636 162 aa3.28□□□□□ -1.88
LINC00560-201ENST00000564593 SEC61GP60059 68 aa3.28□□□□□ -1.88
LINC00560-201ENST00000564593 SELENOTP62341 195 aa3.28□□□□□ -1.88
LINC00560-201ENST00000564593 CDK16Q00536 496 aa3.28□□□□□ -1.88
LINC00560-201ENST00000564593 TGFBR3Q03167 851 aa3.28□□□□□ -1.88
LINC00560-201ENST00000564593 PLD1Q13393 1074 aa3.28□□□□□ -1.88
LINC00560-201ENST00000564593 IMMTQ16891 758 aaKnown RBP3.28□□□□□ -1.88
LINC00560-201ENST00000564593 MICBQ29980 383 aa3.28□□□□□ -1.88
LINC00560-201ENST00000564593 PHYHD1Q5SRE7 291 aa3.28□□□□□ -1.88
LINC00560-201ENST00000564593 OR2A2Q6IF42 318 aa3.28□□□□□ -1.88
LINC00560-201ENST00000564593 UQCC3Q6UW78 93 aa3.28□□□□□ -1.88
LINC00560-201ENST00000564593 RDH10Q8IZV5 341 aa3.28□□□□□ -1.88
LINC00560-201ENST00000564593 FAM184AQ8NB25 1140 aa3.28□□□□□ -1.88
LINC00560-201ENST00000564593 FAM83FQ8NEG4 500 aaPredicted RBP3.28□□□□□ -1.88
LINC00560-201ENST00000564593 TRPV1Q8NER1 839 aa3.28□□□□□ -1.88
LINC00560-201ENST00000564593 OR1L4Q8NGR5 311 aa3.28□□□□□ -1.88
LINC00560-201ENST00000564593 OR13C2Q8NGS9 318 aa3.28□□□□□ -1.88
LINC00560-201ENST00000564593 NUS1Q96E22 293 aa3.28□□□□□ -1.88
LINC00560-201ENST00000564593 AIG1Q9NVV5 245 aa3.28□□□□□ -1.88
LINC00560-201ENST00000564593 ADAM22Q9P0K1 906 aa3.28□□□□□ -1.88
LINC00560-201ENST00000564593 SEC14L3Q9UDX4 400 aa3.28□□□□□ -1.88
LINC00560-201ENST00000564593 HPCAL4Q9UM19 191 aa3.28□□□□□ -1.88
LINC00560-201ENST00000564593 IKBKGQ9Y6K9 419 aa3.28□□□□□ -1.88
LINC00560-201ENST00000564593 ADAMTS7Q9UKP4 1686 aa3.28□□□□□ -1.88
LINC00560-201ENST00000564593 SLIT3O75094 1523 aa3.28□□□□□ -1.89
LINC00560-201ENST00000564593 NFAT5O94916 1531 aa3.28□□□□□ -1.89
LINC00560-201ENST00000564593 DCCP43146 1447 aa3.27□□□□□ -1.89
LINC00560-201ENST00000564593 TTC41PQ6P2S7 1318 aa3.27□□□□□ -1.89
LINC00560-201ENST00000564593 RAD50Q92878 1312 aa3.27□□□□□ -1.89
LINC00560-201ENST00000564593 FAM240BA0A1B0GVZ2 78 aa3.27□□□□□ -1.89
LINC00560-201ENST00000564593 LOC110117498-PIK3R3F6TDL0 507 aa3.27□□□□□ -1.89
LINC00560-201ENST00000564593 GFYI3L273 518 aa3.27□□□□□ -1.89
LINC00560-201ENST00000564593 FOXE1O00358 373 aaPredicted RBP3.27□□□□□ -1.89
LINC00560-201ENST00000564593 SUPT7LO94864 414 aa3.27□□□□□ -1.89
LINC00560-201ENST00000564593 P04436 131 aa3.27□□□□□ -1.89
LINC00560-201ENST00000564593 HPNP05981 417 aa3.27□□□□□ -1.89
LINC00560-201ENST00000564593 CXCR2P25025 360 aa3.27□□□□□ -1.89
LINC00560-201ENST00000564593 TAGLN2P37802 199 aaKnown RBP3.27□□□□□ -1.89
Retrieved 100 of 20,778 RNA–protein pairs in 76.8 ms