RNA–Protein interactions for RNA: ENST00000564574.5

CLN3-212, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,159 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-212ENST00000564574 HLA-DOBP13765 273 aa18.35■□□□□ 0.53
CLN3-212ENST00000564574 PLA2G2AP14555 144 aa18.35■□□□□ 0.53
CLN3-212ENST00000564574 CEACAM8P31997 349 aaPredicted RBP18.35■□□□□ 0.53
CLN3-212ENST00000564574 PTDSS1P48651 473 aaKnown RBP18.35■□□□□ 0.53
CLN3-212ENST00000564574 DAP3P51398 398 aaKnown RBP18.35■□□□□ 0.53
CLN3-212ENST00000564574 RPS6KA3P51812 740 aa18.35■□□□□ 0.53
CLN3-212ENST00000564574 PER3P56645 1201 aa18.35■□□□□ 0.53
CLN3-212ENST00000564574 IGFBP7Q16270 282 aa18.35■□□□□ 0.53
CLN3-212ENST00000564574 TMEM201Q5SNT2 666 aa18.35■□□□□ 0.53
CLN3-212ENST00000564574 NHLRC1Q6VVB1 395 aa18.35■□□□□ 0.53
CLN3-212ENST00000564574 C3P1Q6ZMU1 363 aa18.35■□□□□ 0.53
CLN3-212ENST00000564574 SLC35D2Q76EJ3 337 aa18.35■□□□□ 0.53
CLN3-212ENST00000564574 GALNT4Q8N4A0 578 aa18.35■□□□□ 0.53
CLN3-212ENST00000564574 RPRMLQ8N4K4 120 aa18.35■□□□□ 0.53
CLN3-212ENST00000564574 OR2T33Q8NG76 320 aa18.35■□□□□ 0.53
CLN3-212ENST00000564574 OR8D4Q8NGM9 314 aa18.35■□□□□ 0.53
CLN3-212ENST00000564574 NRG4Q8WWG1 115 aa18.35■□□□□ 0.53
CLN3-212ENST00000564574 ADAD1Q96M93 576 aaKnown RBP18.35■□□□□ 0.53
CLN3-212ENST00000564574 IFT27Q9BW83 186 aa18.35■□□□□ 0.53
CLN3-212ENST00000564574 TSSK6Q9BXA6 273 aa18.35■□□□□ 0.53
CLN3-212ENST00000564574 POLDIP3Q9BY77 421 aaKnown RBP18.35■□□□□ 0.53
CLN3-212ENST00000564574 PLA2G12AQ9BZM1 189 aa18.35■□□□□ 0.53
CLN3-212ENST00000564574 SMPD3Q9NY59 655 aaPredicted RBP18.35■□□□□ 0.53
CLN3-212ENST00000564574 EMC9Q9Y3B6 208 aa18.35■□□□□ 0.53
CLN3-212ENST00000564574 PRRC2CQ9Y520 2896 aaKnown RBP18.34■□□□□ 0.53
CLN3-212ENST00000564574 ESPL1Q14674 2120 aa18.34■□□□□ 0.53
CLN3-212ENST00000564574 H0YJX3 145 aa18.34■□□□□ 0.53
CLN3-212ENST00000564574 ARPC3O15145 178 aa18.34■□□□□ 0.53
CLN3-212ENST00000564574 IDH3BO43837 385 aa18.34■□□□□ 0.53
CLN3-212ENST00000564574 SERPINI2O75830 405 aa18.34■□□□□ 0.53
CLN3-212ENST00000564574 BCL10O95999 233 aa18.34■□□□□ 0.53
CLN3-212ENST00000564574 GNLYP22749 145 aa18.34■□□□□ 0.53
CLN3-212ENST00000564574 NPRL3Q12980 569 aa18.34■□□□□ 0.53
CLN3-212ENST00000564574 GUSBP1Q15486 140 aa18.34■□□□□ 0.53
CLN3-212ENST00000564574 FAM205BPQ63HN1 556 aa18.34■□□□□ 0.53
CLN3-212ENST00000564574 GPR139Q6DWJ6 353 aa18.34■□□□□ 0.53
CLN3-212ENST00000564574 FAM214BQ7L5A3 538 aa18.34■□□□□ 0.53
CLN3-212ENST00000564574 IGFN1Q86VF2 1251 aa18.34■□□□□ 0.53
CLN3-212ENST00000564574 TUSC5Q8IXB3 177 aa18.34■□□□□ 0.53
CLN3-212ENST00000564574 KATNB1Q9BVA0 655 aa18.34■□□□□ 0.53
CLN3-212ENST00000564574 ENKD1Q9H0I2 346 aa18.34■□□□□ 0.53
CLN3-212ENST00000564574 SLC25A19Q9HC21 320 aa18.34■□□□□ 0.53
CLN3-212ENST00000564574 PARPBPQ9NWS1 579 aa18.34■□□□□ 0.53
CLN3-212ENST00000564574 RCE1Q9Y256 329 aa18.34■□□□□ 0.53
CLN3-212ENST00000564574 HSPB2A8KAH6 182 aa18.33■□□□□ 0.52
CLN3-212ENST00000564574 CCL21O00585 134 aa18.33■□□□□ 0.52
CLN3-212ENST00000564574 BHLHE40O14503 412 aa18.33■□□□□ 0.52
CLN3-212ENST00000564574 TOXO94900 526 aa18.33■□□□□ 0.52
CLN3-212ENST00000564574 TXNDC12O95881 172 aa18.33■□□□□ 0.52
CLN3-212ENST00000564574 IGFBP1P08833 259 aaPredicted RBP18.33■□□□□ 0.52
CLN3-212ENST00000564574 TMIGD3P0DMS9 266 aaPredicted RBP18.33■□□□□ 0.52
CLN3-212ENST00000564574 IFNGR1P15260 489 aa18.33■□□□□ 0.52
CLN3-212ENST00000564574 POU1F1P28069 291 aa18.33■□□□□ 0.52
CLN3-212ENST00000564574 AGTR1P30556 359 aa18.33■□□□□ 0.52
CLN3-212ENST00000564574 RPL27P61353 136 aaKnown RBP18.33■□□□□ 0.52
CLN3-212ENST00000564574 PMPCAQ10713 525 aa18.33■□□□□ 0.52
CLN3-212ENST00000564574 HSPB2Q16082 182 aa18.33■□□□□ 0.52
CLN3-212ENST00000564574 SNCBQ16143 134 aa18.33■□□□□ 0.52
CLN3-212ENST00000564574 ACKR1Q16570 336 aa18.33■□□□□ 0.52
CLN3-212ENST00000564574 SLC27A4Q6P1M0 643 aa18.33■□□□□ 0.52
CLN3-212ENST00000564574 MTFR2Q6P444 385 aa18.33■□□□□ 0.52
CLN3-212ENST00000564574 LNX2Q8N448 690 aa18.33■□□□□ 0.52
CLN3-212ENST00000564574 ZIC4Q8N9L1 334 aa18.33■□□□□ 0.52
CLN3-212ENST00000564574 INTS12Q96CB8 462 aaKnown RBP18.33■□□□□ 0.52
CLN3-212ENST00000564574 TEX12Q9BXU0 123 aa18.33■□□□□ 0.52
CLN3-212ENST00000564574 RIBC2Q9H4K1 309 aa18.33■□□□□ 0.52
CLN3-212ENST00000564574 IL20RAQ9UHF4 553 aa18.33■□□□□ 0.52
CLN3-212ENST00000564574 ZNF346Q9UL40 294 aaKnown RBP18.33■□□□□ 0.52
CLN3-212ENST00000564574 CLEC4AQ9UMR7 237 aa18.33■□□□□ 0.52
CLN3-212ENST00000564574 NOSIPQ9Y314 301 aaKnown RBP18.33■□□□□ 0.52
CLN3-212ENST00000564574 PPP1R3DO95685 299 aa18.32■□□□□ 0.52
CLN3-212ENST00000564574 SDHAP31040 664 aa18.32■□□□□ 0.52
CLN3-212ENST00000564574 GRK5P34947 590 aa18.32■□□□□ 0.52
CLN3-212ENST00000564574 VHLP40337 213 aa18.32■□□□□ 0.52
CLN3-212ENST00000564574 GIPRP48546 466 aa18.32■□□□□ 0.52
CLN3-212ENST00000564574 SMSP52788 366 aa18.32■□□□□ 0.52
CLN3-212ENST00000564574 CLDN17P56750 224 aa18.32■□□□□ 0.52
CLN3-212ENST00000564574 ERVK-25P63136 954 aa18.32■□□□□ 0.52
CLN3-212ENST00000564574 CDK5Q00535 292 aa18.32■□□□□ 0.52
CLN3-212ENST00000564574 GINS1Q14691 196 aa18.32■□□□□ 0.52
CLN3-212ENST00000564574 PTGES3Q15185 160 aaKnown RBP18.32■□□□□ 0.52
CLN3-212ENST00000564574 PGGHGQ32M88 737 aa18.32■□□□□ 0.52
CLN3-212ENST00000564574 CLEC12AQ5QGZ9 265 aa18.32■□□□□ 0.52
CLN3-212ENST00000564574 AAED1Q7RTV5 226 aa18.32■□□□□ 0.52
CLN3-212ENST00000564574 FAM122BQ7Z309 247 aa18.32■□□□□ 0.52
CLN3-212ENST00000564574 GCNT2Q8N0V5 402 aa18.32■□□□□ 0.52
CLN3-212ENST00000564574 MARVELD2Q8N4S9 558 aa18.32■□□□□ 0.52
CLN3-212ENST00000564574 OR6K3Q8NGY3 331 aa18.32■□□□□ 0.52
CLN3-212ENST00000564574 OR6X1Q8NH79 312 aa18.32■□□□□ 0.52
CLN3-212ENST00000564574 ASB10Q8WXI3 467 aa18.32■□□□□ 0.52
CLN3-212ENST00000564574 ZNF570Q96NI8 536 aa18.32■□□□□ 0.52
CLN3-212ENST00000564574 ERMAPQ96PL5 475 aaPredicted RBP18.32■□□□□ 0.52
CLN3-212ENST00000564574 ZNF385AQ96PM9 386 aaKnown RBP18.32■□□□□ 0.52
CLN3-212ENST00000564574 TSPAN32Q96QS1 320 aa18.32■□□□□ 0.52
CLN3-212ENST00000564574 SFXN3Q9BWM7 321 aa18.32■□□□□ 0.52
CLN3-212ENST00000564574 TOR3AQ9H497 397 aa18.32■□□□□ 0.52
CLN3-212ENST00000564574 MED29Q9NX70 200 aa18.32■□□□□ 0.52
CLN3-212ENST00000564574 GRHPRQ9UBQ7 328 aa18.32■□□□□ 0.52
CLN3-212ENST00000564574 IER3IP1Q9Y5U9 82 aa18.32■□□□□ 0.52
CLN3-212ENST00000564574 ZNF462Q96JM2 2506 aa18.31■□□□□ 0.52
Retrieved 100 of 20,778 RNA–protein pairs in 49.2 ms