RNA–Protein interactions for RNA: ENST00000563798.1

VPS9D1-203, Transcript of VPS9 domain containing 1, humanhuman

TSL 3

Gene VPS9D1, Length 459 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1-203ENST00000563798 WFDC6Q9BQY6 131 aa14.94□□□□□ -0.02
VPS9D1-203ENST00000563798 ZNF385DQ9H6B1 395 aa14.94□□□□□ -0.02
VPS9D1-203ENST00000563798 MRPL39Q9NYK5 338 aaKnown RBP14.94□□□□□ -0.02
VPS9D1-203ENST00000563798 SELENONQ9NZV5 590 aa14.94□□□□□ -0.02
VPS9D1-203ENST00000563798 CDC42EP3Q9UKI2 254 aa14.94□□□□□ -0.02
VPS9D1-203ENST00000563798 LY6HO94772 140 aa14.93□□□□□ -0.02
VPS9D1-203ENST00000563798 CDH12P55289 794 aa14.93□□□□□ -0.02
VPS9D1-203ENST00000563798 NCALDP61601 193 aa14.93□□□□□ -0.02
VPS9D1-203ENST00000563798 LSM11P83369 360 aaKnown RBP eCLIP14.93□□□□□ -0.02
VPS9D1-203ENST00000563798 CYB5R2Q6BCY4 276 aa14.93□□□□□ -0.02
VPS9D1-203ENST00000563798 ZNF613Q6PF04 617 aa14.93□□□□□ -0.02
VPS9D1-203ENST00000563798 RANBP3LQ86VV4 465 aaPredicted RBP14.93□□□□□ -0.02
VPS9D1-203ENST00000563798 C11orf65Q8NCR3 313 aa14.93□□□□□ -0.02
VPS9D1-203ENST00000563798 ANKRD27Q96NW4 1050 aa14.93□□□□□ -0.02
VPS9D1-203ENST00000563798 ARHGDIGQ99819 225 aa14.93□□□□□ -0.02
VPS9D1-203ENST00000563798 SEC61A2Q9H9S3 476 aa14.93□□□□□ -0.02
VPS9D1-203ENST00000563798 B3GNT2Q9NY97 397 aa14.93□□□□□ -0.02
VPS9D1-203ENST00000563798 NIPSNAP3AQ9UFN0 247 aaPredicted RBP14.93□□□□□ -0.02
VPS9D1-203ENST00000563798 LEF1Q9UJU2 399 aaPredicted RBP14.93□□□□□ -0.02
VPS9D1-203ENST00000563798 SLC13A4Q9UKG4 626 aa14.93□□□□□ -0.02
VPS9D1-203ENST00000563798 ANGPT4Q9Y264 503 aa14.93□□□□□ -0.02
VPS9D1-203ENST00000563798 NOX1Q9Y5S8 564 aa14.93□□□□□ -0.02
VPS9D1-203ENST00000563798 LOC390937A0A1W2PQ73 354 aa14.92□□□□□ -0.02
VPS9D1-203ENST00000563798 ZNF503-AS2A6NEH8 195 aa14.92□□□□□ -0.02
VPS9D1-203ENST00000563798 VSTM5A8MXK1 200 aa14.92□□□□□ -0.02
VPS9D1-203ENST00000563798 MT-ATP6P00846 226 aa14.92□□□□□ -0.02
VPS9D1-203ENST00000563798 FAM157CP0CG43 387 aa14.92□□□□□ -0.02
VPS9D1-203ENST00000563798 IGHV4-31P0DP07 118 aa14.92□□□□□ -0.02
VPS9D1-203ENST00000563798 HLA-DOBP13765 273 aa14.92□□□□□ -0.02
VPS9D1-203ENST00000563798 NR4A2P43354 598 aa14.92□□□□□ -0.02
VPS9D1-203ENST00000563798 PHYHD1Q5SRE7 291 aa14.92□□□□□ -0.02
VPS9D1-203ENST00000563798 PXKQ7Z7A4 578 aa14.92□□□□□ -0.02
VPS9D1-203ENST00000563798 MYPOPQ86VE0 399 aaPredicted RBP14.92□□□□□ -0.02
VPS9D1-203ENST00000563798 CKAP2Q8WWK9 683 aa14.92□□□□□ -0.02
VPS9D1-203ENST00000563798 MOGAT1Q96PD6 335 aa14.92□□□□□ -0.02
VPS9D1-203ENST00000563798 DOK1Q99704 481 aa14.92□□□□□ -0.02
VPS9D1-203ENST00000563798 ASPNQ9BXN1 380 aa14.92□□□□□ -0.02
VPS9D1-203ENST00000563798 INTS9Q9NV88 658 aaKnown RBP14.92□□□□□ -0.02
VPS9D1-203ENST00000563798 USP22Q9UPT9 525 aa14.92□□□□□ -0.02
VPS9D1-203ENST00000563798 NDUFAF1Q9Y375 327 aa14.92□□□□□ -0.02
VPS9D1-203ENST00000563798 IGHV2OR16-5A0A0B4J2B6 119 aa14.91□□□□□ -0.02
VPS9D1-203ENST00000563798 HMGB1P1B2RPK0 211 aaPredicted RBP14.91□□□□□ -0.02
VPS9D1-203ENST00000563798 PLPP3O14495 311 aa14.91□□□□□ -0.02
VPS9D1-203ENST00000563798 CELA3BP08861 270 aa14.91□□□□□ -0.02
VPS9D1-203ENST00000563798 NQO1P15559 274 aaKnown RBP14.91□□□□□ -0.02
VPS9D1-203ENST00000563798 CBLP22681 906 aa14.91□□□□□ -0.02
VPS9D1-203ENST00000563798 AQP1P29972 269 aa14.91□□□□□ -0.02
VPS9D1-203ENST00000563798 GZMKP49863 264 aa14.91□□□□□ -0.02
VPS9D1-203ENST00000563798 IDH3GP51553 393 aaPredicted RBP14.91□□□□□ -0.02
VPS9D1-203ENST00000563798 POU3F1Q03052 451 aaPredicted RBP14.91□□□□□ -0.02
VPS9D1-203ENST00000563798 PUDPQ08623 228 aa14.91□□□□□ -0.02
VPS9D1-203ENST00000563798 PMS2P3Q13401 168 aa14.91□□□□□ -0.02
VPS9D1-203ENST00000563798 DUSP7Q16829 419 aa14.91□□□□□ -0.02
VPS9D1-203ENST00000563798 SLC46A3Q7Z3Q1 461 aa14.91□□□□□ -0.02
VPS9D1-203ENST00000563798 DHDDSQ86SQ9 333 aa14.91□□□□□ -0.02
VPS9D1-203ENST00000563798 RETREG3Q86VR2 466 aa14.91□□□□□ -0.02
VPS9D1-203ENST00000563798 GPR32P1Q8NGA4 272 aa14.91□□□□□ -0.02
VPS9D1-203ENST00000563798 DYDC1Q8WWB3 177 aa14.91□□□□□ -0.02
VPS9D1-203ENST00000563798 MAGEB18Q96M61 343 aa14.91□□□□□ -0.02
VPS9D1-203ENST00000563798 ZNF75AQ96N20 296 aa14.91□□□□□ -0.02
VPS9D1-203ENST00000563798 CGREF1Q99674 301 aa14.91□□□□□ -0.02
VPS9D1-203ENST00000563798 PIMREGQ9BSJ6 248 aa14.91□□□□□ -0.02
VPS9D1-203ENST00000563798 DENND2DQ9H6A0 471 aaPredicted RBP14.91□□□□□ -0.02
VPS9D1-203ENST00000563798 KAT8Q9H7Z6 458 aaKnown RBP14.91□□□□□ -0.02
VPS9D1-203ENST00000563798 LPAR3Q9UBY5 353 aa14.91□□□□□ -0.02
VPS9D1-203ENST00000563798 TMEM129A0AVI4 362 aa14.9□□□□□ -0.02
VPS9D1-203ENST00000563798 SLC35F4A4IF30 521 aa14.9□□□□□ -0.02
VPS9D1-203ENST00000563798 M0QX08 132 aa14.9□□□□□ -0.02
VPS9D1-203ENST00000563798 M0R3G1 203 aa14.9□□□□□ -0.02
VPS9D1-203ENST00000563798 CHP2O43745 196 aa14.9□□□□□ -0.02
VPS9D1-203ENST00000563798 LYPD3O95274 346 aa14.9□□□□□ -0.02
VPS9D1-203ENST00000563798 NPR2P20594 1047 aa14.9□□□□□ -0.02
VPS9D1-203ENST00000563798 THBS2P35442 1172 aa14.9□□□□□ -0.02
VPS9D1-203ENST00000563798 THBS4P35443 961 aa14.9□□□□□ -0.02
VPS9D1-203ENST00000563798 MDP1Q86V88 176 aa14.9□□□□□ -0.02
VPS9D1-203ENST00000563798 SLC30A8Q8IWU4 369 aa14.9□□□□□ -0.02
VPS9D1-203ENST00000563798 SMYD1Q8NB12 490 aa14.9□□□□□ -0.02
VPS9D1-203ENST00000563798 ZNF540Q8NDQ6 660 aa14.9□□□□□ -0.02
VPS9D1-203ENST00000563798 NEU4Q8WWR8 484 aaPredicted RBP14.9□□□□□ -0.02
VPS9D1-203ENST00000563798 TXNDC15Q96J42 360 aa14.9□□□□□ -0.02
VPS9D1-203ENST00000563798 KCNK17Q96T54 332 aa14.9□□□□□ -0.02
VPS9D1-203ENST00000563798 MCHR1Q99705 422 aa14.9□□□□□ -0.02
VPS9D1-203ENST00000563798 VRK1Q99986 396 aaPredicted RBP14.9□□□□□ -0.02
VPS9D1-203ENST00000563798 SIKE1Q9BRV8 207 aa14.9□□□□□ -0.02
VPS9D1-203ENST00000563798 RAB1BQ9H0U4 201 aa14.9□□□□□ -0.02
VPS9D1-203ENST00000563798 PCDHAC1Q9H158 963 aa14.9□□□□□ -0.02
VPS9D1-203ENST00000563798 B3GAT2Q9NPZ5 323 aa14.9□□□□□ -0.02
VPS9D1-203ENST00000563798 MED29Q9NX70 200 aa14.9□□□□□ -0.02
VPS9D1-203ENST00000563798 TRIM33Q9UPN9 1127 aa14.9□□□□□ -0.02
VPS9D1-203ENST00000563798 ANGPT2O15123 496 aa14.89□□□□□ -0.03
VPS9D1-203ENST00000563798 GIFP27352 417 aa14.89□□□□□ -0.03
VPS9D1-203ENST00000563798 IL1RL1Q01638 556 aa14.89□□□□□ -0.03
VPS9D1-203ENST00000563798 ZP4Q12836 540 aa14.89□□□□□ -0.03
VPS9D1-203ENST00000563798 NPTX1Q15818 432 aa14.89□□□□□ -0.03
VPS9D1-203ENST00000563798 METTL21CQ5VZV1 264 aa14.89□□□□□ -0.03
VPS9D1-203ENST00000563798 VHLLQ6RSH7 139 aa14.89□□□□□ -0.03
VPS9D1-203ENST00000563798 PATL1Q86TB9 770 aaKnown RBP14.89□□□□□ -0.03
VPS9D1-203ENST00000563798 SNX32Q86XE0 403 aa14.89□□□□□ -0.03
VPS9D1-203ENST00000563798 WDFY1Q8IWB7 410 aa14.89□□□□□ -0.03
VPS9D1-203ENST00000563798 ANKS4BQ8N8V4 417 aa14.89□□□□□ -0.03
Retrieved 100 of 20,778 RNA–protein pairs in 35.2 ms