RNA–Protein interactions for RNA: ENST00000561713.1

VPS35-202, Transcript of VPS35, retromer complex component, humanhuman

TSL 4

Gene VPS35, Length 589 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-202ENST00000561713 DLEU7Q6UYE1 221 aa16.46■□□□□ 0.23
VPS35-202ENST00000561713 DHDDSQ86SQ9 333 aa16.46■□□□□ 0.23
VPS35-202ENST00000561713 MDP1Q86V88 176 aa16.46■□□□□ 0.23
VPS35-202ENST00000561713 ARMC8Q8IUR7 673 aa16.46■□□□□ 0.23
VPS35-202ENST00000561713 DNAJA4Q8WW22 397 aaPredicted RBP16.46■□□□□ 0.23
VPS35-202ENST00000561713 BOD1Q96IK1 185 aa16.46■□□□□ 0.23
VPS35-202ENST00000561713 FOXN4Q96NZ1 517 aa16.46■□□□□ 0.23
VPS35-202ENST00000561713 SPATA5L1Q9BVQ7 753 aa16.46■□□□□ 0.23
VPS35-202ENST00000561713 SLC13A4Q9UKG4 626 aa16.46■□□□□ 0.23
VPS35-202ENST00000561713 ANGPT4Q9Y264 503 aa16.46■□□□□ 0.23
VPS35-202ENST00000561713 FKBP7Q9Y680 259 aa16.46■□□□□ 0.23
VPS35-202ENST00000561713 A0A087WUJ7 227 aa16.45■□□□□ 0.22
VPS35-202ENST00000561713 NDUFS8O00217 210 aa16.45■□□□□ 0.22
VPS35-202ENST00000561713 HNF1AP20823 631 aa16.45■□□□□ 0.22
VPS35-202ENST00000561713 SERPINF1P36955 418 aa16.45■□□□□ 0.22
VPS35-202ENST00000561713 ATP4BP51164 291 aa16.45■□□□□ 0.22
VPS35-202ENST00000561713 CDH12P55289 794 aa16.45■□□□□ 0.22
VPS35-202ENST00000561713 HGFACQ04756 655 aa16.45■□□□□ 0.22
VPS35-202ENST00000561713 CYP51A1Q16850 503 aa16.45■□□□□ 0.22
VPS35-202ENST00000561713 ULK3Q6PHR2 472 aa16.45■□□□□ 0.22
VPS35-202ENST00000561713 H1FNTQ75WM6 255 aaPredicted RBP16.45■□□□□ 0.22
VPS35-202ENST00000561713 PTOV1Q86YD1 416 aa16.45■□□□□ 0.22
VPS35-202ENST00000561713 UEVLDQ8IX04 471 aa16.45■□□□□ 0.22
VPS35-202ENST00000561713 C10orf53Q8N6V4 93 aa16.45■□□□□ 0.22
VPS35-202ENST00000561713 HIPK4Q8NE63 616 aa16.45■□□□□ 0.22
VPS35-202ENST00000561713 MAGEE2Q8TD90 523 aaPredicted RBP16.45■□□□□ 0.22
VPS35-202ENST00000561713 SLC47A1Q96FL8 570 aa16.45■□□□□ 0.22
VPS35-202ENST00000561713 TMEM38AQ9H6F2 299 aa16.45■□□□□ 0.22
VPS35-202ENST00000561713 SELENONQ9NZV5 590 aa16.45■□□□□ 0.22
VPS35-202ENST00000561713 TENM1Q9UKZ4 2725 aa16.44■□□□□ 0.22
VPS35-202ENST00000561713 IGHV2OR16-5A0A0B4J2B6 119 aa16.44■□□□□ 0.22
VPS35-202ENST00000561713 MS4A18H0YCH9 400 aa16.44■□□□□ 0.22
VPS35-202ENST00000561713 RPL36A-HNRNPH2H7BZ11 118 aa16.44■□□□□ 0.22
VPS35-202ENST00000561713 OR2T1O43869 369 aa16.44■□□□□ 0.22
VPS35-202ENST00000561713 TGFAP01135 160 aa16.44■□□□□ 0.22
VPS35-202ENST00000561713 IGKV3-15P01624 115 aa16.44■□□□□ 0.22
VPS35-202ENST00000561713 GPX2P18283 190 aa16.44■□□□□ 0.22
VPS35-202ENST00000561713 NPTX1Q15818 432 aa16.44■□□□□ 0.22
VPS35-202ENST00000561713 MS4A18Q3C1V0 323 aa16.44■□□□□ 0.22
VPS35-202ENST00000561713 FAM91A1Q658Y4 838 aa16.44■□□□□ 0.22
VPS35-202ENST00000561713 RETREG3Q86VR2 466 aa16.44■□□□□ 0.22
VPS35-202ENST00000561713 SVOPLQ8N434 492 aa16.44■□□□□ 0.22
VPS35-202ENST00000561713 GPR32P1Q8NGA4 272 aa16.44■□□□□ 0.22
VPS35-202ENST00000561713 MS4A3Q96HJ5 214 aa16.44■□□□□ 0.22
VPS35-202ENST00000561713 TXNDC15Q96J42 360 aa16.44■□□□□ 0.22
VPS35-202ENST00000561713 ZNF607Q96SK3 696 aa16.44■□□□□ 0.22
VPS35-202ENST00000561713 SOX7Q9BT81 388 aa16.44■□□□□ 0.22
VPS35-202ENST00000561713 TMEM27Q9HBJ8 222 aa16.44■□□□□ 0.22
VPS35-202ENST00000561713 PRDM4Q9UKN5 801 aa16.44■□□□□ 0.22
VPS35-202ENST00000561713 CORO2BQ9UQ03 480 aa16.44■□□□□ 0.22
VPS35-202ENST00000561713 EVPLLA8MZ36 301 aa16.43■□□□□ 0.22
VPS35-202ENST00000561713 hCG_2039718K7EN88 272 aa16.43■□□□□ 0.22
VPS35-202ENST00000561713 AKAP8O43823 692 aaKnown RBP16.43■□□□□ 0.22
VPS35-202ENST00000561713 MFN2O95140 757 aa16.43■□□□□ 0.22
VPS35-202ENST00000561713 HLA-HP01893 362 aa16.43■□□□□ 0.22
VPS35-202ENST00000561713 B4GALT1P15291 398 aa16.43■□□□□ 0.22
VPS35-202ENST00000561713 THBS4P35443 961 aa16.43■□□□□ 0.22
VPS35-202ENST00000561713 CAMK2DQ13557 499 aa16.43■□□□□ 0.22
VPS35-202ENST00000561713 IQCCQ4KMZ1 466 aa16.43■□□□□ 0.22
VPS35-202ENST00000561713 RUNDC3AQ59EK9 446 aa16.43■□□□□ 0.22
VPS35-202ENST00000561713 C1QTNF12Q5T7M4 302 aa16.43■□□□□ 0.22
VPS35-202ENST00000561713 LIPNQ5VXI9 398 aa16.43■□□□□ 0.22
VPS35-202ENST00000561713 KRT80Q6KB66 452 aa16.43■□□□□ 0.22
VPS35-202ENST00000561713 C5orf46Q6UWT4 87 aa16.43■□□□□ 0.22
VPS35-202ENST00000561713 WDR88Q6ZMY6 472 aa16.43■□□□□ 0.22
VPS35-202ENST00000561713 RANBP3LQ86VV4 465 aaPredicted RBP16.43■□□□□ 0.22
VPS35-202ENST00000561713 RBM45Q8IUH3 476 aaKnown RBP16.43■□□□□ 0.22
VPS35-202ENST00000561713 ZCCHC24Q8N2G6 241 aaKnown RBP16.43■□□□□ 0.22
VPS35-202ENST00000561713 ADPRHL1Q8NDY3 354 aa16.43■□□□□ 0.22
VPS35-202ENST00000561713 PIK3C3Q8NEB9 887 aa16.43■□□□□ 0.22
VPS35-202ENST00000561713 VANGL1Q8TAA9 524 aaPredicted RBP16.43■□□□□ 0.22
VPS35-202ENST00000561713 SLC41A3Q96GZ6 507 aa16.43■□□□□ 0.22
VPS35-202ENST00000561713 C1orf159Q96HA4 380 aa16.43■□□□□ 0.22
VPS35-202ENST00000561713 ZNF317Q96PQ6 595 aaPredicted RBP16.43■□□□□ 0.22
VPS35-202ENST00000561713 ASPNQ9BXN1 380 aa16.43■□□□□ 0.22
VPS35-202ENST00000561713 INTS9Q9NV88 658 aaKnown RBP16.43■□□□□ 0.22
VPS35-202ENST00000561713 LEF1Q9UJU2 399 aaPredicted RBP16.43■□□□□ 0.22
VPS35-202ENST00000561713 LOC390937A0A1W2PQ73 354 aa16.42■□□□□ 0.22
VPS35-202ENST00000561713 PRORSD1PA6NEY8 169 aa16.42■□□□□ 0.22
VPS35-202ENST00000561713 CPSF4LA6NMK7 179 aaKnown RBP16.42■□□□□ 0.22
VPS35-202ENST00000561713 ZNF99A8MXY4 864 aaPredicted RBP16.42■□□□□ 0.22
VPS35-202ENST00000561713 C11orf98E9PRG8 122 aa16.42■□□□□ 0.22
VPS35-202ENST00000561713 KPNA4O00629 521 aaPredicted RBP16.42■□□□□ 0.22
VPS35-202ENST00000561713 CBR1P16152 277 aa16.42■□□□□ 0.22
VPS35-202ENST00000561713 PCBP3P57721 371 aaKnown RBP16.42■□□□□ 0.22
VPS35-202ENST00000561713 PUDPQ08623 228 aa16.42■□□□□ 0.22
VPS35-202ENST00000561713 PMS2P3Q13401 168 aa16.42■□□□□ 0.22
VPS35-202ENST00000561713 SNTB2Q13425 540 aaKnown RBP16.42■□□□□ 0.22
VPS35-202ENST00000561713 CR1LQ2VPA4 569 aa16.42■□□□□ 0.22
VPS35-202ENST00000561713 SPATA21Q7Z572 469 aa16.42■□□□□ 0.22
VPS35-202ENST00000561713 TSPYL5Q86VY4 417 aaPredicted RBP16.42■□□□□ 0.22
VPS35-202ENST00000561713 C20orf196Q8IYI0 205 aa16.42■□□□□ 0.22
VPS35-202ENST00000561713 CDK20Q8IZL9 346 aa16.42■□□□□ 0.22
VPS35-202ENST00000561713 C11orf65Q8NCR3 313 aa16.42■□□□□ 0.22
VPS35-202ENST00000561713 OR4D11Q8NGI4 311 aa16.42■□□□□ 0.22
VPS35-202ENST00000561713 EPYCQ99645 322 aa16.42■□□□□ 0.22
VPS35-202ENST00000561713 MCHR1Q99705 422 aa16.42■□□□□ 0.22
VPS35-202ENST00000561713 ARHGDIGQ99819 225 aa16.42■□□□□ 0.22
VPS35-202ENST00000561713 PLK3Q9H4B4 646 aa16.42■□□□□ 0.22
VPS35-202ENST00000561713 ZNF385DQ9H6B1 395 aa16.42■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 25.5 ms