RNA–Protein interactions for RNA: ENST00000560628.1

LDLR-214, Transcript of low density lipoprotein receptor, humanhuman

TSL 3

Gene LDLR, Length 535 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-214ENST00000560628 ZNF726A6NNF4 738 aa8.87□□□□□ -0.99
LDLR-214ENST00000560628 C11orf98E9PRG8 122 aa8.87□□□□□ -0.99
LDLR-214ENST00000560628 PLPP3O14495 311 aa8.87□□□□□ -0.99
LDLR-214ENST00000560628 ANGPT2O15123 496 aa8.87□□□□□ -0.99
LDLR-214ENST00000560628 AKAP8O43823 692 aaKnown RBP8.87□□□□□ -0.99
LDLR-214ENST00000560628 FZD7O75084 574 aa8.87□□□□□ -0.99
LDLR-214ENST00000560628 HLA-HP01893 362 aa8.87□□□□□ -0.99
LDLR-214ENST00000560628 CD79AP11912 226 aa8.87□□□□□ -0.99
LDLR-214ENST00000560628 SLC25A16P16260 332 aa8.87□□□□□ -0.99
LDLR-214ENST00000560628 USF1P22415 310 aaPredicted RBP8.87□□□□□ -0.99
LDLR-214ENST00000560628 AHCYP23526 432 aa8.87□□□□□ -0.99
LDLR-214ENST00000560628 PAX7P23759 505 aa8.87□□□□□ -0.99
LDLR-214ENST00000560628 THBS4P35443 961 aa8.87□□□□□ -0.99
LDLR-214ENST00000560628 PDLIM4P50479 330 aa8.87□□□□□ -0.99
LDLR-214ENST00000560628 PCBP3P57721 371 aaKnown RBP8.87□□□□□ -0.99
LDLR-214ENST00000560628 POU3F1Q03052 451 aaPredicted RBP8.87□□□□□ -0.99
LDLR-214ENST00000560628 PIGFQ07326 219 aa8.87□□□□□ -0.99
LDLR-214ENST00000560628 SF3A3Q12874 501 aaKnown RBP eCLIP8.87□□□□□ -0.996e-9■■■□□ 17.4
LDLR-214ENST00000560628 CAMK2DQ13557 499 aa8.87□□□□□ -0.99
LDLR-214ENST00000560628 MFSD13AQ14CX5 517 aa8.87□□□□□ -0.99
LDLR-214ENST00000560628 NPTX1Q15818 432 aa8.87□□□□□ -0.99
LDLR-214ENST00000560628 CYB5R2Q6BCY4 276 aa8.87□□□□□ -0.99
LDLR-214ENST00000560628 NHLRC1Q6VVB1 395 aa8.87□□□□□ -0.99
LDLR-214ENST00000560628 MDP1Q86V88 176 aa8.87□□□□□ -0.99
LDLR-214ENST00000560628 C20orf196Q8IYI0 205 aa8.87□□□□□ -0.99
LDLR-214ENST00000560628 ZCCHC24Q8N2G6 241 aaKnown RBP8.87□□□□□ -0.99
LDLR-214ENST00000560628 DPP10Q8N608 796 aa8.87□□□□□ -0.99
LDLR-214ENST00000560628 FAM169BQ8N8A8 192 aa8.87□□□□□ -0.99
LDLR-214ENST00000560628 ADPRHL1Q8NDY3 354 aa8.87□□□□□ -0.99
LDLR-214ENST00000560628 ANKK1Q8NFD2 765 aa8.87□□□□□ -0.99
LDLR-214ENST00000560628 BHLHE22Q8NFJ8 381 aaPredicted RBP8.87□□□□□ -0.99
LDLR-214ENST00000560628 OR4F15Q8NGB8 312 aa8.87□□□□□ -0.99
LDLR-214ENST00000560628 OR4D11Q8NGI4 311 aa8.87□□□□□ -0.99
LDLR-214ENST00000560628 OR6T1Q8NGN1 323 aa8.87□□□□□ -0.99
LDLR-214ENST00000560628 OR6N1Q8NGY5 312 aa8.87□□□□□ -0.99
LDLR-214ENST00000560628 VANGL1Q8TAA9 524 aaPredicted RBP8.87□□□□□ -0.99
LDLR-214ENST00000560628 PROX1Q92786 737 aa8.87□□□□□ -0.99
LDLR-214ENST00000560628 SLC41A3Q96GZ6 507 aa8.87□□□□□ -0.99
LDLR-214ENST00000560628 FOXN4Q96NZ1 517 aa8.87□□□□□ -0.99
LDLR-214ENST00000560628 ZNF317Q96PQ6 595 aaPredicted RBP8.87□□□□□ -0.99
LDLR-214ENST00000560628 KCNK17Q96T54 332 aa8.87□□□□□ -0.99
LDLR-214ENST00000560628 ZNF385DQ9H6B1 395 aa8.87□□□□□ -0.99
LDLR-214ENST00000560628 MRPL39Q9NYK5 338 aaKnown RBP8.87□□□□□ -0.99
LDLR-214ENST00000560628 TRIM33Q9UPN9 1127 aa8.87□□□□□ -0.99
LDLR-214ENST00000560628 POFUT2Q9Y2G5 429 aa8.87□□□□□ -0.99
LDLR-214ENST00000560628 CORINQ9Y5Q5 1042 aa8.87□□□□□ -0.99
LDLR-214ENST00000560628 CHD3Q12873 2000 aaKnown RBP8.87□□□□□ -0.99
LDLR-214ENST00000560628 IGHV2OR16-5A0A0B4J2B6 119 aa8.86□□□□□ -0.99
LDLR-214ENST00000560628 A0A0G2JND7 137 aa8.86□□□□□ -0.99
LDLR-214ENST00000560628 ZNF99A8MXY4 864 aaPredicted RBP8.86□□□□□ -0.99
LDLR-214ENST00000560628 B9A039 149 aa8.86□□□□□ -0.99
LDLR-214ENST00000560628 hCG_2039718K7EN88 272 aa8.86□□□□□ -0.99
LDLR-214ENST00000560628 EDF1O60869 148 aaKnown RBP8.86□□□□□ -0.99
LDLR-214ENST00000560628 CH25HO95992 272 aa8.86□□□□□ -0.99
LDLR-214ENST00000560628 IGKV3-15P01624 115 aa8.86□□□□□ -0.99
LDLR-214ENST00000560628 CSF3P09919 207 aa8.86□□□□□ -0.99
LDLR-214ENST00000560628 IGHV4-31P0DP07 118 aa8.86□□□□□ -0.99
LDLR-214ENST00000560628 ARR3P36575 388 aa8.86□□□□□ -0.99
LDLR-214ENST00000560628 LSM11P83369 360 aaKnown RBP eCLIP8.86□□□□□ -0.99
LDLR-214ENST00000560628 VLDLRP98155 873 aa8.86□□□□□ -0.99
LDLR-214ENST00000560628 PUDPQ08623 228 aa8.86□□□□□ -0.99
LDLR-214ENST00000560628 RBBP4Q09028 425 aa8.86□□□□□ -0.99
LDLR-214ENST00000560628 GGTLC2Q14390 218 aa8.86□□□□□ -0.99
LDLR-214ENST00000560628 C3orf36Q3SXR2 165 aa8.86□□□□□ -0.99
LDLR-214ENST00000560628 CHRFAM7AQ494W8 412 aa8.86□□□□□ -0.99
LDLR-214ENST00000560628 ENTPD8Q5MY95 495 aa8.86□□□□□ -0.99
LDLR-214ENST00000560628 C6orf52Q5T4I8 152 aa8.86□□□□□ -0.99
LDLR-214ENST00000560628 ZNF613Q6PF04 617 aa8.86□□□□□ -0.99
LDLR-214ENST00000560628 WDR88Q6ZMY6 472 aa8.86□□□□□ -0.99
LDLR-214ENST00000560628 ZNF813Q6ZN06 617 aa8.86□□□□□ -0.99
LDLR-214ENST00000560628 SPATA21Q7Z572 469 aa8.86□□□□□ -0.99
LDLR-214ENST00000560628 SCAIQ8N9R8 606 aa8.86□□□□□ -0.99
LDLR-214ENST00000560628 OR6S1Q8NH40 331 aa8.86□□□□□ -0.99
LDLR-214ENST00000560628 OR10A6Q8NH74 314 aa8.86□□□□□ -0.99
LDLR-214ENST00000560628 MS4A3Q96HJ5 214 aa8.86□□□□□ -0.99
LDLR-214ENST00000560628 ARHGDIGQ99819 225 aa8.86□□□□□ -0.99
LDLR-214ENST00000560628 TMEM43Q9BTV4 400 aa8.86□□□□□ -0.99
LDLR-214ENST00000560628 KAT8Q9H7Z6 458 aaKnown RBP8.86□□□□□ -0.99
LDLR-214ENST00000560628 B3GAT2Q9NPZ5 323 aa8.86□□□□□ -0.99
LDLR-214ENST00000560628 NOX1Q9Y5S8 564 aa8.86□□□□□ -0.99
LDLR-214ENST00000560628 FKBP7Q9Y680 259 aa8.86□□□□□ -0.99
LDLR-214ENST00000560628 RTTNQ86VV8 2226 aa8.86□□□□□ -0.99
LDLR-214ENST00000560628 ARFGEF3Q5TH69 2177 aa8.86□□□□□ -0.99
LDLR-214ENST00000560628 TMEM129A0AVI4 362 aa8.85□□□□□ -0.99
LDLR-214ENST00000560628 VSTM5A8MXK1 200 aa8.85□□□□□ -0.99
LDLR-214ENST00000560628 KPNA4O00629 521 aaPredicted RBP8.85□□□□□ -0.99
LDLR-214ENST00000560628 FBP2O00757 339 aa8.85□□□□□ -0.99
LDLR-214ENST00000560628 OR6A2O95222 327 aa8.85□□□□□ -0.99
LDLR-214ENST00000560628 LYPD3O95274 346 aa8.85□□□□□ -0.99
LDLR-214ENST00000560628 THY1P04216 161 aa8.85□□□□□ -0.99
LDLR-214ENST00000560628 C8BP07358 591 aa8.85□□□□□ -0.99
LDLR-214ENST00000560628 PATE4P0C8F1 98 aa8.85□□□□□ -0.99
LDLR-214ENST00000560628 ADORA3P0DMS8 318 aa8.85□□□□□ -0.99
LDLR-214ENST00000560628 IFNGR1P15260 489 aa8.85□□□□□ -0.99
LDLR-214ENST00000560628 B4GALT1P15291 398 aa8.85□□□□□ -0.99
LDLR-214ENST00000560628 NPR2P20594 1047 aa8.85□□□□□ -0.99
LDLR-214ENST00000560628 CD247P20963 164 aa8.85□□□□□ -0.99
LDLR-214ENST00000560628 NR4A2P43354 598 aa8.85□□□□□ -0.99
LDLR-214ENST00000560628 BIDP55957 195 aa8.85□□□□□ -0.99
LDLR-214ENST00000560628 EFNB3Q15768 340 aa8.85□□□□□ -0.99
Retrieved 100 of 20,778 RNA–protein pairs in 29.8 ms