RNA–Protein interactions for RNA: ENST00000559119.1

VPS13C-208, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 2

Gene VPS13C, Length 738 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-208ENST00000559119 SLC26A3P40879 764 aa2.34□□□□□ -2.03
VPS13C-208ENST00000559119 NAMPTP43490 491 aa2.34□□□□□ -2.03
VPS13C-208ENST00000559119 YWHAGP61981 247 aaKnown RBP eCLIP2.34□□□□□ -2.03
VPS13C-208ENST00000559119 OC90Q02509 493 aaPredicted RBP2.34□□□□□ -2.03
VPS13C-208ENST00000559119 SLC39A6Q13433 755 aa2.34□□□□□ -2.03
VPS13C-208ENST00000559119 NAB1Q13506 487 aa2.34□□□□□ -2.03
VPS13C-208ENST00000559119 IDI1Q13907 227 aa2.34□□□□□ -2.03
VPS13C-208ENST00000559119 POU6F1Q14863 301 aa2.34□□□□□ -2.03
VPS13C-208ENST00000559119 PDK1Q15118 436 aa2.34□□□□□ -2.03
VPS13C-208ENST00000559119 CDK10Q15131 360 aa2.34□□□□□ -2.03
VPS13C-208ENST00000559119 TRIP13Q15645 432 aaPredicted RBP2.34□□□□□ -2.03
VPS13C-208ENST00000559119 EXOC3L4Q17RC7 722 aa2.34□□□□□ -2.03
VPS13C-208ENST00000559119 LRIT3Q3SXY7 679 aa2.34□□□□□ -2.03
VPS13C-208ENST00000559119 PPM1LQ5SGD2 360 aa2.34□□□□□ -2.03
VPS13C-208ENST00000559119 C12orf60Q5U649 245 aa2.34□□□□□ -2.03
VPS13C-208ENST00000559119 OR5M10Q6IEU7 315 aa2.34□□□□□ -2.03
VPS13C-208ENST00000559119 CNSTQ6PJW8 725 aa2.34□□□□□ -2.03
VPS13C-208ENST00000559119 PLEKHG7Q6ZR37 379 aa2.34□□□□□ -2.03
VPS13C-208ENST00000559119 NIPA1Q7RTP0 329 aa2.34□□□□□ -2.03
VPS13C-208ENST00000559119 TAS2R42Q7RTR8 314 aa2.34□□□□□ -2.03
VPS13C-208ENST00000559119 SETD3Q86TU7 594 aaPredicted RBP2.34□□□□□ -2.03
VPS13C-208ENST00000559119 LINC01551Q86U37 167 aa2.34□□□□□ -2.03
VPS13C-208ENST00000559119 AKAP14Q86UN6 197 aa2.34□□□□□ -2.03
VPS13C-208ENST00000559119 SLC13A5Q86YT5 568 aaPredicted RBP2.34□□□□□ -2.03
VPS13C-208ENST00000559119 ELMOD2Q8IZ81 293 aa2.34□□□□□ -2.03
VPS13C-208ENST00000559119 CSNK1A1LQ8N752 337 aa2.34□□□□□ -2.03
VPS13C-208ENST00000559119 SNX31Q8N9S9 440 aa2.34□□□□□ -2.03
VPS13C-208ENST00000559119 ZBTB44Q8NCP5 570 aa2.34□□□□□ -2.03
VPS13C-208ENST00000559119 LPCAT1Q8NF37 534 aa2.34□□□□□ -2.03
VPS13C-208ENST00000559119 RAB2BQ8WUD1 216 aa2.34□□□□□ -2.03
VPS13C-208ENST00000559119 CAPSLQ8WWF8 208 aa2.34□□□□□ -2.03
VPS13C-208ENST00000559119 PYDC1Q8WXC3 89 aa2.34□□□□□ -2.03
VPS13C-208ENST00000559119 RDH5Q92781 318 aa2.34□□□□□ -2.03
VPS13C-208ENST00000559119 MYDGFQ969H8 173 aa2.34□□□□□ -2.03
VPS13C-208ENST00000559119 TOP1MTQ969P6 601 aa2.34□□□□□ -2.03
VPS13C-208ENST00000559119 CIDECQ96AQ7 238 aaPredicted RBP2.34□□□□□ -2.03
VPS13C-208ENST00000559119 TMIGD2Q96BF3 282 aa2.34□□□□□ -2.03
VPS13C-208ENST00000559119 FGGYQ96C11 551 aa2.34□□□□□ -2.03
VPS13C-208ENST00000559119 MRPL53Q96EL3 112 aaKnown RBP2.34□□□□□ -2.03
VPS13C-208ENST00000559119 C11orf24Q96F05 449 aaPredicted RBP2.34□□□□□ -2.03
VPS13C-208ENST00000559119 RMND5BQ96G75 393 aaPredicted RBP2.34□□□□□ -2.03
VPS13C-208ENST00000559119 SH3YL1Q96HL8 342 aaPredicted RBP2.34□□□□□ -2.03
VPS13C-208ENST00000559119 VPS39Q96JC1 886 aa2.34□□□□□ -2.03
VPS13C-208ENST00000559119 CEP170P1Q96L14 293 aa2.34□□□□□ -2.03
VPS13C-208ENST00000559119 ZNF578Q96N58 590 aaPredicted RBP2.34□□□□□ -2.03
VPS13C-208ENST00000559119 MTMR9Q96QG7 549 aa2.34□□□□□ -2.03
VPS13C-208ENST00000559119 SECISBP2Q96T21 854 aaKnown RBP2.34□□□□□ -2.03
VPS13C-208ENST00000559119 KCNK16Q96T55 309 aa2.34□□□□□ -2.03
VPS13C-208ENST00000559119 SERPINI1Q99574 410 aa2.34□□□□□ -2.03
VPS13C-208ENST00000559119 COQ7Q99807 217 aa2.34□□□□□ -2.03
VPS13C-208ENST00000559119 CALN1Q9BXU9 219 aa2.34□□□□□ -2.03
VPS13C-208ENST00000559119 DHX33Q9H6R0 707 aaKnown RBP2.34□□□□□ -2.03
VPS13C-208ENST00000559119 CXorf21Q9HAI6 301 aa2.34□□□□□ -2.03
VPS13C-208ENST00000559119 NEK6Q9HC98 313 aa2.34□□□□□ -2.03
VPS13C-208ENST00000559119 MRPL40Q9NQ50 206 aaKnown RBP2.34□□□□□ -2.03
VPS13C-208ENST00000559119 FBXO8Q9NRD0 319 aa2.34□□□□□ -2.03
VPS13C-208ENST00000559119 SLC39A1Q9NY26 324 aa2.34□□□□□ -2.03
VPS13C-208ENST00000559119 TAS2R7Q9NYW3 318 aa2.34□□□□□ -2.03
VPS13C-208ENST00000559119 PSMC3IPQ9P2W1 217 aaPredicted RBP2.34□□□□□ -2.03
VPS13C-208ENST00000559119 PHF11Q9UIL8 331 aa2.34□□□□□ -2.03
VPS13C-208ENST00000559119 RIMS3Q9UJD0 308 aa2.34□□□□□ -2.03
VPS13C-208ENST00000559119 FBXW2Q9UKT8 454 aa2.34□□□□□ -2.03
VPS13C-208ENST00000559119 PSME2Q9UL46 239 aa2.34□□□□□ -2.03
VPS13C-208ENST00000559119 TMCC3Q9ULS5 477 aa2.34□□□□□ -2.03
VPS13C-208ENST00000559119 POMPQ9Y244 141 aa2.34□□□□□ -2.03
VPS13C-208ENST00000559119 RNF11Q9Y3C5 154 aa2.34□□□□□ -2.03
VPS13C-208ENST00000559119 UBE4BO95155 1302 aa2.34□□□□□ -2.04
VPS13C-208ENST00000559119 RTL9Q8NET4 1388 aa2.34□□□□□ -2.04
VPS13C-208ENST00000559119 MON2Q7Z3U7 1717 aa2.34□□□□□ -2.04
VPS13C-208ENST00000559119 NWD2Q9ULI1 1742 aa2.34□□□□□ -2.04
VPS13C-208ENST00000559119 DCCP43146 1447 aa2.34□□□□□ -2.04
VPS13C-208ENST00000559119 MYH1P12882 1939 aa2.33□□□□□ -2.04
VPS13C-208ENST00000559119 A0A0G2JND7 137 aa2.33□□□□□ -2.04
VPS13C-208ENST00000559119 LINC00854A0A1B0GVQ3 168 aa2.33□□□□□ -2.04
VPS13C-208ENST00000559119 EXOC1LA0A1B0GW35 172 aa2.33□□□□□ -2.04
VPS13C-208ENST00000559119 SAGE2PA6NJ88 616 aa2.33□□□□□ -2.04
VPS13C-208ENST00000559119 DHRS7CA6NNS2 312 aa2.33□□□□□ -2.04
VPS13C-208ENST00000559119 FAM166BA8MTA8 275 aa2.33□□□□□ -2.04
VPS13C-208ENST00000559119 hCG_2039718K7EN88 272 aa2.33□□□□□ -2.04
VPS13C-208ENST00000559119 PSMD11O00231 422 aa2.33□□□□□ -2.04
VPS13C-208ENST00000559119 CFLARO15519 480 aa2.33□□□□□ -2.04
VPS13C-208ENST00000559119 NOL3O60936 208 aaKnown RBP2.33□□□□□ -2.04
VPS13C-208ENST00000559119 SNNO75324 88 aaPredicted RBP2.33□□□□□ -2.04
VPS13C-208ENST00000559119 BCAS2O75934 225 aaPredicted RBP2.33□□□□□ -2.04
VPS13C-208ENST00000559119 ECDO95905 644 aaPredicted RBP2.33□□□□□ -2.04
VPS13C-208ENST00000559119 SLC16A8O95907 504 aa2.33□□□□□ -2.04
VPS13C-208ENST00000559119 KRT8P05787 483 aa2.33□□□□□ -2.04
VPS13C-208ENST00000559119 IGKV5-2P06315 115 aa2.33□□□□□ -2.04
VPS13C-208ENST00000559119 PGK2P07205 417 aa2.33□□□□□ -2.04
VPS13C-208ENST00000559119 MYL2P10916 166 aa2.33□□□□□ -2.04
VPS13C-208ENST00000559119 KRT13P13646 458 aa2.33□□□□□ -2.04
VPS13C-208ENST00000559119 UCHL3P15374 230 aa2.33□□□□□ -2.04
VPS13C-208ENST00000559119 PRKACAP17612 351 aa2.33□□□□□ -2.04
VPS13C-208ENST00000559119 ATF6P18850 670 aa2.33□□□□□ -2.04
VPS13C-208ENST00000559119 TBPP20226 339 aa2.33□□□□□ -2.04
VPS13C-208ENST00000559119 CCNA2P20248 432 aa2.33□□□□□ -2.04
VPS13C-208ENST00000559119 IL10P22301 178 aa2.33□□□□□ -2.04
VPS13C-208ENST00000559119 IL12AP29459 219 aa2.33□□□□□ -2.04
VPS13C-208ENST00000559119 CD40LGP29965 261 aa2.33□□□□□ -2.04
VPS13C-208ENST00000559119 ADSSP30520 456 aa2.33□□□□□ -2.04
Retrieved 100 of 20,778 RNA–protein pairs in 29.6 ms