RNA–Protein interactions for RNA: ENST00000557529.1

SHMT2-233, Transcript of serine hydroxymethyltransferase 2, human

TSL 2

Gene SHMT2, Length 1,369 nt, Biotype protein coding, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SHMT2-233	ENST00000557529	TRAPPC4	Q9Y296	219 aa		11.23	□□□□□ -0.61
SHMT2-233	ENST00000557529	MRPS18C	Q9Y3D5	142 aa	Known RBP	11.23	□□□□□ -0.61
SHMT2-233	ENST00000557529	NOX1	Q9Y5S8	564 aa		11.23	□□□□□ -0.61
SHMT2-233	ENST00000557529		A0A1W2PNV4	684 aa		11.22	□□□□□ -0.61
SHMT2-233	ENST00000557529	GJE1	A6NN92	205 aa		11.22	□□□□□ -0.61
SHMT2-233	ENST00000557529	NPIPA5	E9PKD4	350 aa		11.22	□□□□□ -0.61
SHMT2-233	ENST00000557529	MS4A18	H0YCH9	400 aa		11.22	□□□□□ -0.61
SHMT2-233	ENST00000557529	ARHGEF9	O43307	516 aa		11.22	□□□□□ -0.61
SHMT2-233	ENST00000557529	AHCYL1	O43865	530 aa		11.22	□□□□□ -0.61
SHMT2-233	ENST00000557529	PLG	P00747	810 aa	Predicted RBP	11.22	□□□□□ -0.61
SHMT2-233	ENST00000557529	MRPL3	P09001	348 aa	Known RBP	11.22	□□□□□ -0.61
SHMT2-233	ENST00000557529	OR2T7	P0C7T2	308 aa		11.22	□□□□□ -0.61
SHMT2-233	ENST00000557529	PSMA1	P25786	263 aa	Known RBP	11.22	□□□□□ -0.61
SHMT2-233	ENST00000557529	CENPA	P49450	140 aa		11.22	□□□□□ -0.61
SHMT2-233	ENST00000557529	BLVRA	P53004	296 aa		11.22	□□□□□ -0.61
SHMT2-233	ENST00000557529	OR2B6	P58173	313 aa		11.22	□□□□□ -0.61
SHMT2-233	ENST00000557529	SLC35A1	P78382	337 aa		11.22	□□□□□ -0.61
SHMT2-233	ENST00000557529	MS4A18	Q3C1V0	323 aa		11.22	□□□□□ -0.61
SHMT2-233	ENST00000557529	TMEM176B	Q3YBM2	270 aa	Predicted RBP	11.22	□□□□□ -0.61
SHMT2-233	ENST00000557529	ZNF322	Q6U7Q0	402 aa	Predicted RBP	11.22	□□□□□ -0.61
SHMT2-233	ENST00000557529	PXK	Q7Z7A4	578 aa		11.22	□□□□□ -0.61
SHMT2-233	ENST00000557529	ZNF227	Q86WZ6	799 aa		11.22	□□□□□ -0.61
SHMT2-233	ENST00000557529	PHC2	Q8IXK0	858 aa		11.22	□□□□□ -0.61
SHMT2-233	ENST00000557529	SLC35F2	Q8IXU6	374 aa		11.22	□□□□□ -0.61
SHMT2-233	ENST00000557529	GHDC	Q8N2G8	530 aa		11.22	□□□□□ -0.61
SHMT2-233	ENST00000557529	GALNT16	Q8N428	558 aa		11.22	□□□□□ -0.61
SHMT2-233	ENST00000557529	OR5M1	Q8NGP8	315 aa		11.22	□□□□□ -0.61
SHMT2-233	ENST00000557529	OR6K6	Q8NGW6	343 aa		11.22	□□□□□ -0.61
SHMT2-233	ENST00000557529	OR2T27	Q8NH04	317 aa		11.22	□□□□□ -0.61
SHMT2-233	ENST00000557529	ZPLD1	Q8TCW7	415 aa		11.22	□□□□□ -0.61
SHMT2-233	ENST00000557529	FAM173A	Q9BQD7	235 aa		11.22	□□□□□ -0.61
SHMT2-233	ENST00000557529	TMEM185B	Q9H7F4	350 aa		11.22	□□□□□ -0.61
SHMT2-233	ENST00000557529	ZFP64	Q9NPA5	681 aa		11.22	□□□□□ -0.61
SHMT2-233	ENST00000557529	VSX1	Q9NZR4	365 aa	Predicted RBP	11.22	□□□□□ -0.61
SHMT2-233	ENST00000557529	NPIPA1	Q9UND3	350 aa		11.22	□□□□□ -0.61
SHMT2-233	ENST00000557529	RPH3A	Q9Y2J0	694 aa	Predicted RBP	11.22	□□□□□ -0.61
SHMT2-233	ENST00000557529	FKBP7	Q9Y680	259 aa		11.22	□□□□□ -0.61
SHMT2-233	ENST00000557529	DMD	P11532	3685 aa		11.21	□□□□□ -0.61
SHMT2-233	ENST00000557529		A0A0G2JMM0	328 aa		11.21	□□□□□ -0.61
SHMT2-233	ENST00000557529		A0A1W2PPB8	328 aa		11.21	□□□□□ -0.61
SHMT2-233	ENST00000557529		A0A1W2PRS3	328 aa		11.21	□□□□□ -0.61
SHMT2-233	ENST00000557529	OR2M5	A3KFT3	312 aa		11.21	□□□□□ -0.61
SHMT2-233	ENST00000557529	PRSS37	A4D1T9	235 aa		11.21	□□□□□ -0.61
SHMT2-233	ENST00000557529	LRRC3C	A6NJW4	275 aa		11.21	□□□□□ -0.61
SHMT2-233	ENST00000557529	KIR3DP1	A8MWS1	328 aa		11.21	□□□□□ -0.61
SHMT2-233	ENST00000557529	AKR7A3	O95154	331 aa		11.21	□□□□□ -0.61
SHMT2-233	ENST00000557529	PMS2P2	O95744	297 aa		11.21	□□□□□ -0.61
SHMT2-233	ENST00000557529	MT-ND5	P03915	603 aa		11.21	□□□□□ -0.61
SHMT2-233	ENST00000557529	ZNF182	P17025	639 aa	Predicted RBP	11.21	□□□□□ -0.61
SHMT2-233	ENST00000557529	UGT2B10	P36537	528 aa		11.21	□□□□□ -0.61
SHMT2-233	ENST00000557529	VBP1	P61758	197 aa		11.21	□□□□□ -0.61
SHMT2-233	ENST00000557529	NCS1	P62166	190 aa		11.21	□□□□□ -0.61
SHMT2-233	ENST00000557529	LSM3	P62310	102 aa	Known RBP	11.21	□□□□□ -0.61
SHMT2-233	ENST00000557529	ACTA2	P62736	377 aa		11.21	□□□□□ -0.61
SHMT2-233	ENST00000557529	RAC1	P63000	192 aa		11.21	□□□□□ -0.61
SHMT2-233	ENST00000557529	ACTG2	P63267	376 aa		11.21	□□□□□ -0.61
SHMT2-233	ENST00000557529	TUBA1B	P68363	451 aa		11.21	□□□□□ -0.61
SHMT2-233	ENST00000557529	FOXK1	P85037	733 aa		11.21	□□□□□ -0.61
SHMT2-233	ENST00000557529	HSF1	Q00613	529 aa		11.21	□□□□□ -0.61
SHMT2-233	ENST00000557529	HSF2	Q03933	536 aa		11.21	□□□□□ -0.61
SHMT2-233	ENST00000557529	DOC2B	Q14184	412 aa		11.21	□□□□□ -0.61
SHMT2-233	ENST00000557529	OR1C1	Q15619	314 aa		11.21	□□□□□ -0.61
SHMT2-233	ENST00000557529	ZNF239	Q16600	458 aa	Known RBP	11.21	□□□□□ -0.61
SHMT2-233	ENST00000557529	LINC01590	Q5TEZ4	76 aa		11.21	□□□□□ -0.61
SHMT2-233	ENST00000557529	EEF1A1P5	Q5VTE0	462 aa		11.21	□□□□□ -0.61
SHMT2-233	ENST00000557529	AGAP7P	Q5VUJ5	663 aa		11.21	□□□□□ -0.61
SHMT2-233	ENST00000557529	LIPK	Q5VXJ0	399 aa		11.21	□□□□□ -0.61
SHMT2-233	ENST00000557529	TMPPE	Q6ZT21	453 aa		11.21	□□□□□ -0.61
SHMT2-233	ENST00000557529	USP43	Q70EL4	1123 aa		11.21	□□□□□ -0.61
SHMT2-233	ENST00000557529	TUBA1A	Q71U36	451 aa		11.21	□□□□□ -0.61
SHMT2-233	ENST00000557529	HDDC2	Q7Z4H3	204 aa		11.21	□□□□□ -0.61
SHMT2-233	ENST00000557529	OR51L1	Q8NGJ5	315 aa		11.21	□□□□□ -0.61
SHMT2-233	ENST00000557529	SPRYD4	Q8WW59	207 aa	Predicted RBP	11.21	□□□□□ -0.61
SHMT2-233	ENST00000557529	KCNE4	Q8WWG9	221 aa		11.21	□□□□□ -0.61
SHMT2-233	ENST00000557529	RPL3L	Q92901	407 aa	Known RBP	11.21	□□□□□ -0.61
SHMT2-233	ENST00000557529	MIB2	Q96AX9	1013 aa		11.21	□□□□□ -0.61
SHMT2-233	ENST00000557529	ZHX1-C8orf76	Q96EF9	292 aa		11.21	□□□□□ -0.61
SHMT2-233	ENST00000557529	AGAP4	Q96P64	663 aa		11.21	□□□□□ -0.61
SHMT2-233	ENST00000557529	TBX5	Q99593	518 aa		11.21	□□□□□ -0.61
SHMT2-233	ENST00000557529	OR51E2	Q9H255	320 aa		11.21	□□□□□ -0.61
SHMT2-233	ENST00000557529	BABAM2	Q9NXR7	383 aa		11.21	□□□□□ -0.61
SHMT2-233	ENST00000557529	B4GALT7	Q9UBV7	327 aa		11.21	□□□□□ -0.61
SHMT2-233	ENST00000557529	CDV3	Q9UKY7	258 aa	Known RBP	11.21	□□□□□ -0.61
SHMT2-233	ENST00000557529	STUB1	Q9UNE7	303 aa		11.21	□□□□□ -0.61
SHMT2-233	ENST00000557529	ZFHX2	Q9C0A1	2572 aa	Predicted RBP	11.21	□□□□□ -0.62
SHMT2-233	ENST00000557529	RIF1	Q5UIP0	2472 aa	Known RBP	11.21	□□□□□ -0.62
SHMT2-233	ENST00000557529	ZNF292	O60281	2723 aa		11.2	□□□□□ -0.62
SHMT2-233	ENST00000557529	LOC100506127	A0A0U1RQW1	187 aa		11.2	□□□□□ -0.62
SHMT2-233	ENST00000557529		A0A1W2PNR3	127 aa		11.2	□□□□□ -0.62
SHMT2-233	ENST00000557529	ARGFX	A6NJG6	315 aa		11.2	□□□□□ -0.62
SHMT2-233	ENST00000557529	SULT2B1	O00204	365 aa		11.2	□□□□□ -0.62
SHMT2-233	ENST00000557529	EIF1B	O60739	113 aa	Known RBP	11.2	□□□□□ -0.62
SHMT2-233	ENST00000557529	NEURL1	O76050	574 aa		11.2	□□□□□ -0.62
SHMT2-233	ENST00000557529	WDPCP	O95876	746 aa		11.2	□□□□□ -0.62
SHMT2-233	ENST00000557529	TF	P02787	698 aa		11.2	□□□□□ -0.62
SHMT2-233	ENST00000557529	PYCR1	P32322	319 aa		11.2	□□□□□ -0.62
SHMT2-233	ENST00000557529	SFTPD	P35247	375 aa		11.2	□□□□□ -0.62
SHMT2-233	ENST00000557529	SERPINB10	P48595	397 aa		11.2	□□□□□ -0.62
SHMT2-233	ENST00000557529	TAS2R43	P59537	309 aa		11.2	□□□□□ -0.62
SHMT2-233	ENST00000557529	CSNK2A1	P68400	391 aa	Predicted RBP	11.2	□□□□□ -0.62

Retrieved 100 of 20,778 RNA–protein pairs in 33.3 ms