RNA–Protein interactions for RNA: ENST00000553280.1

SCFD1-209, Transcript of sec1 family domain containing 1, humanhuman

TSL 2

Gene SCFD1, Length 574 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-209ENST00000553280 CCDC126Q96EE4 140 aa3.68□□□□□ -1.82
SCFD1-209ENST00000553280 PELOQ9BRX2 385 aaKnown RBP3.68□□□□□ -1.82
SCFD1-209ENST00000553280 RIOK2Q9BVS4 552 aaKnown RBP3.68□□□□□ -1.82
SCFD1-209ENST00000553280 OR51M1Q9H341 326 aa3.68□□□□□ -1.82
SCFD1-209ENST00000553280 ADAP2Q9NPF8 381 aa3.68□□□□□ -1.82
SCFD1-209ENST00000553280 C20orf96Q9NUD7 363 aaPredicted RBP3.68□□□□□ -1.82
SCFD1-209ENST00000553280 CLEC4EQ9ULY5 219 aa3.68□□□□□ -1.82
SCFD1-209ENST00000553280 ASF1AQ9Y294 204 aa3.68□□□□□ -1.82
SCFD1-209ENST00000553280 HCFC1P51610 2035 aa3.68□□□□□ -1.82
SCFD1-209ENST00000553280 RALGAPA1Q6GYQ0 2036 aa3.68□□□□□ -1.82
SCFD1-209ENST00000553280 KLF18A0A0U1RQI7 1052 aa3.67□□□□□ -1.82
SCFD1-209ENST00000553280 A0A1B0GTQ1 180 aa3.67□□□□□ -1.82
SCFD1-209ENST00000553280 EPOPA6NHQ4 379 aa3.67□□□□□ -1.82
SCFD1-209ENST00000553280 LRRIQ3A6PVS8 624 aaPredicted RBP3.67□□□□□ -1.82
SCFD1-209ENST00000553280 SPECC1L-ADORA2AF8WAN1 911 aa3.67□□□□□ -1.82
SCFD1-209ENST00000553280 PHOX2AO14813 284 aa3.67□□□□□ -1.82
SCFD1-209ENST00000553280 AGPAT2O15120 278 aa3.67□□□□□ -1.82
SCFD1-209ENST00000553280 MGRN1O60291 552 aa3.67□□□□□ -1.82
SCFD1-209ENST00000553280 ERCC1P07992 297 aaPredicted RBP3.67□□□□□ -1.82
SCFD1-209ENST00000553280 RALBP11234 206 aa3.67□□□□□ -1.82
SCFD1-209ENST00000553280 CCNB1P14635 433 aa3.67□□□□□ -1.82
SCFD1-209ENST00000553280 TCN1P20061 433 aaPredicted RBP3.67□□□□□ -1.82
SCFD1-209ENST00000553280 NAMPTP43490 491 aa3.67□□□□□ -1.82
SCFD1-209ENST00000553280 NPBWR2P48146 333 aa3.67□□□□□ -1.82
SCFD1-209ENST00000553280 RFX3P48380 749 aa3.67□□□□□ -1.82
SCFD1-209ENST00000553280 KRTAP10-12P60413 245 aa3.67□□□□□ -1.82
SCFD1-209ENST00000553280 RAB10P61026 200 aa3.67□□□□□ -1.82
SCFD1-209ENST00000553280 PDIA2Q13087 525 aaKnown RBP3.67□□□□□ -1.82
SCFD1-209ENST00000553280 ATP6AP1Q15904 470 aa3.67□□□□□ -1.82
SCFD1-209ENST00000553280 KYAT1Q16773 422 aa3.67□□□□□ -1.82
SCFD1-209ENST00000553280 CCDC73Q6ZRK6 1079 aa3.67□□□□□ -1.82
SCFD1-209ENST00000553280 TMEM179BQ7Z7N9 219 aa3.67□□□□□ -1.82
SCFD1-209ENST00000553280 LHFPL3Q86UP9 236 aa3.67□□□□□ -1.82
SCFD1-209ENST00000553280 CD177Q8N6Q3 437 aa3.67□□□□□ -1.82
SCFD1-209ENST00000553280 PQLC3Q8N755 202 aa3.67□□□□□ -1.82
SCFD1-209ENST00000553280 ZNF557Q8N988 423 aaPredicted RBP3.67□□□□□ -1.82
SCFD1-209ENST00000553280 FAM184AQ8NB25 1140 aa3.67□□□□□ -1.82
SCFD1-209ENST00000553280 FBXL13Q8NEE6 735 aa3.67□□□□□ -1.82
SCFD1-209ENST00000553280 BBS1Q8NFJ9 593 aa3.67□□□□□ -1.82
SCFD1-209ENST00000553280 C7orf33Q8WU49 177 aa3.67□□□□□ -1.82
SCFD1-209ENST00000553280 TSG101Q99816 390 aa3.67□□□□□ -1.82
SCFD1-209ENST00000553280 KCTD14Q9BQ13 255 aaPredicted RBP3.67□□□□□ -1.82
SCFD1-209ENST00000553280 TMEM246Q9BRR3 403 aa3.67□□□□□ -1.82
SCFD1-209ENST00000553280 NAT9Q9BTE0 207 aa3.67□□□□□ -1.82
SCFD1-209ENST00000553280 POLR2J2Q9GZM3 115 aaKnown RBP3.67□□□□□ -1.82
SCFD1-209ENST00000553280 POLR2J3Q9H1A7 115 aaKnown RBP3.67□□□□□ -1.82
SCFD1-209ENST00000553280 RANBP3Q9H6Z4 567 aaPredicted RBP3.67□□□□□ -1.82
SCFD1-209ENST00000553280 MRPL47Q9HD33 250 aaKnown RBP3.67□□□□□ -1.82
SCFD1-209ENST00000553280 RPRD1BQ9NQG5 326 aaKnown RBP3.67□□□□□ -1.82
SCFD1-209ENST00000553280 EXD2Q9NVH0 621 aa3.67□□□□□ -1.82
SCFD1-209ENST00000553280 AIG1Q9NVV5 245 aa3.67□□□□□ -1.82
SCFD1-209ENST00000553280 GPATCH2LQ9NWQ4 482 aa3.67□□□□□ -1.82
SCFD1-209ENST00000553280 PACSIN2Q9UNF0 486 aaPredicted RBP3.67□□□□□ -1.82
SCFD1-209ENST00000553280 NOTCH3Q9UM47 2321 aa3.66□□□□□ -1.82
SCFD1-209ENST00000553280 TNRQ92752 1358 aa3.66□□□□□ -1.82
SCFD1-209ENST00000553280 TRAV25A0A0B4J276 109 aa3.66□□□□□ -1.82
SCFD1-209ENST00000553280 AIM2O14862 343 aa3.66□□□□□ -1.82
SCFD1-209ENST00000553280 EIF3HO15372 352 aaKnown RBP eCLIP3.66□□□□□ -1.82
SCFD1-209ENST00000553280 FGGP02679 453 aa3.66□□□□□ -1.82
SCFD1-209ENST00000553280 ANXA5P08758 320 aa3.66□□□□□ -1.82
SCFD1-209ENST00000553280 COX7A1P24310 79 aa3.66□□□□□ -1.82
SCFD1-209ENST00000553280 FOXN2P32314 431 aa3.66□□□□□ -1.82
SCFD1-209ENST00000553280 MAGEA1P43355 309 aa3.66□□□□□ -1.82
SCFD1-209ENST00000553280 TMED10P49755 219 aaKnown RBP3.66□□□□□ -1.82
SCFD1-209ENST00000553280 GPR157Q5UAW9 335 aa3.66□□□□□ -1.82
SCFD1-209ENST00000553280 C22orf42Q6IC83 251 aa3.66□□□□□ -1.82
SCFD1-209ENST00000553280 REEP3Q6NUK4 255 aa3.66□□□□□ -1.82
SCFD1-209ENST00000553280 Q6ZR54 194 aa3.66□□□□□ -1.82
SCFD1-209ENST00000553280 SLC16A14Q7RTX9 510 aa3.66□□□□□ -1.82
SCFD1-209ENST00000553280 CEND1Q8N111 149 aa3.66□□□□□ -1.82
SCFD1-209ENST00000553280 LIX1Q8N485 282 aa3.66□□□□□ -1.82
SCFD1-209ENST00000553280 C14orf178Q8N769 122 aaPredicted RBP3.66□□□□□ -1.82
SCFD1-209ENST00000553280 GSDMAQ96QA5 445 aa3.66□□□□□ -1.82
SCFD1-209ENST00000553280 DNTTIP1Q9H147 329 aa3.66□□□□□ -1.82
SCFD1-209ENST00000553280 CWH43Q9H720 699 aa3.66□□□□□ -1.82
SCFD1-209ENST00000553280 FGF20Q9NP95 211 aaPredicted RBP3.66□□□□□ -1.82
SCFD1-209ENST00000553280 LYARQ9NX58 379 aaKnown RBP3.66□□□□□ -1.82
SCFD1-209ENST00000553280 QPCTLQ9NXS2 382 aa3.66□□□□□ -1.82
SCFD1-209ENST00000553280 CALYQ9NYX4 217 aa3.66□□□□□ -1.82
SCFD1-209ENST00000553280 PTTG3PQ9NZH4 202 aa3.66□□□□□ -1.82
SCFD1-209ENST00000553280 PDP1Q9P0J1 537 aaPredicted RBP3.66□□□□□ -1.82
SCFD1-209ENST00000553280 TBC1D24Q9ULP9 559 aa3.66□□□□□ -1.82
SCFD1-209ENST00000553280 AKNAQ7Z591 1439 aa3.65□□□□□ -1.83
SCFD1-209ENST00000553280 RBMY1BA6NDE4 496 aaKnown RBP3.65□□□□□ -1.83
SCFD1-209ENST00000553280 RBMY1EA6NEQ0 496 aaKnown RBP3.65□□□□□ -1.83
SCFD1-209ENST00000553280 C12orf77C9JDV5 145 aa3.65□□□□□ -1.83
SCFD1-209ENST00000553280 GOLGA8TH3BQL2 631 aa3.65□□□□□ -1.83
SCFD1-209ENST00000553280 SIRPB1O00241 398 aa3.65□□□□□ -1.83
SCFD1-209ENST00000553280 NDUFAB1O14561 156 aa3.65□□□□□ -1.83
SCFD1-209ENST00000553280 TNFSF11O14788 317 aa3.65□□□□□ -1.83
SCFD1-209ENST00000553280 CHST1O43916 411 aa3.65□□□□□ -1.83
SCFD1-209ENST00000553280 RBMY1DP0C7P1 496 aaKnown RBP3.65□□□□□ -1.83
SCFD1-209ENST00000553280 RBMY1A1P0DJD3 496 aaKnown RBP3.65□□□□□ -1.83
SCFD1-209ENST00000553280 MYL2P10916 166 aa3.65□□□□□ -1.83
SCFD1-209ENST00000553280 GSTM3P21266 225 aa3.65□□□□□ -1.83
SCFD1-209ENST00000553280 STOMP27105 288 aa3.65□□□□□ -1.83
SCFD1-209ENST00000553280 GTF2E2P29084 291 aaKnown RBP3.65□□□□□ -1.83
SCFD1-209ENST00000553280 RORAP35398 523 aa3.65□□□□□ -1.83
SCFD1-209ENST00000553280 VDAC2P45880 294 aaPredicted RBP3.65□□□□□ -1.83
SCFD1-209ENST00000553280 UQCRFS1P47985 274 aa3.65□□□□□ -1.83
Retrieved 100 of 20,778 RNA–protein pairs in 29.3 ms