RNA–Protein interactions for RNA: ENST00000552823.5

LIMA1-215, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene LIMA1, Length 3,254 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-215ENST00000552823 LANCL2Q9NS86 450 aa5.08□□□□□ -1.6
LIMA1-215ENST00000552823 ALG5Q9Y673 324 aa5.08□□□□□ -1.6
LIMA1-215ENST00000552823 FRYQ5TBA9 3013 aa5.08□□□□□ -1.6
LIMA1-215ENST00000552823 MYO7BQ6PIF6 2116 aa5.08□□□□□ -1.6
LIMA1-215ENST00000552823 TMED7-TICAM2A0A0A6YYA0 188 aa5.08□□□□□ -1.6
LIMA1-215ENST00000552823 ISPDA4D126 451 aa5.08□□□□□ -1.6
LIMA1-215ENST00000552823 ZNF593O00488 134 aaPredicted RBP5.08□□□□□ -1.6
LIMA1-215ENST00000552823 SUSD5O60279 629 aa5.08□□□□□ -1.6
LIMA1-215ENST00000552823 KHDRBS3O75525 346 aaKnown RBP5.08□□□□□ -1.6
LIMA1-215ENST00000552823 ZFPL1O95159 310 aa5.08□□□□□ -1.6
LIMA1-215ENST00000552823 CCL4P13236 92 aa5.08□□□□□ -1.6
LIMA1-215ENST00000552823 FASLGP48023 281 aa5.08□□□□□ -1.6
LIMA1-215ENST00000552823 PPP3R1P63098 170 aa5.08□□□□□ -1.6
LIMA1-215ENST00000552823 POU3F1Q03052 451 aaPredicted RBP5.08□□□□□ -1.6
LIMA1-215ENST00000552823 MRPL28Q13084 256 aaKnown RBP5.08□□□□□ -1.6
LIMA1-215ENST00000552823 CAMK2DQ13557 499 aa5.08□□□□□ -1.6
LIMA1-215ENST00000552823 ACKR1Q16570 336 aa5.08□□□□□ -1.6
LIMA1-215ENST00000552823 NTRK2Q16620 822 aa5.08□□□□□ -1.6
LIMA1-215ENST00000552823 COL28A1Q2UY09 1125 aa5.08□□□□□ -1.6
LIMA1-215ENST00000552823 BTBD16Q32M84 506 aa5.08□□□□□ -1.6
LIMA1-215ENST00000552823 FAM205BPQ63HN1 556 aa5.08□□□□□ -1.6
LIMA1-215ENST00000552823 C19orf48Q6RUI8 117 aa5.08□□□□□ -1.6
LIMA1-215ENST00000552823 PLPP7Q8NBV4 271 aa5.08□□□□□ -1.6
LIMA1-215ENST00000552823 PMM1Q92871 262 aa5.08□□□□□ -1.6
LIMA1-215ENST00000552823 DAZLQ92904 295 aaKnown RBP5.08□□□□□ -1.6
LIMA1-215ENST00000552823 TIMP4Q99727 224 aa5.08□□□□□ -1.6
LIMA1-215ENST00000552823 NXF2Q9GZY0 626 aaKnown RBP5.08□□□□□ -1.6
LIMA1-215ENST00000552823 OR10A4Q9H209 315 aa5.08□□□□□ -1.6
LIMA1-215ENST00000552823 RNF121Q9H920 327 aa5.08□□□□□ -1.6
LIMA1-215ENST00000552823 ELOVL3Q9HB03 270 aa5.08□□□□□ -1.6
LIMA1-215ENST00000552823 CPNE5Q9HCH3 593 aa5.08□□□□□ -1.6
LIMA1-215ENST00000552823 PRDM9Q9NQV7 894 aa5.08□□□□□ -1.6
LIMA1-215ENST00000552823 TAS2R10Q9NYW0 307 aa5.08□□□□□ -1.6
LIMA1-215ENST00000552823 PPIEQ9UNP9 301 aaKnown RBP5.08□□□□□ -1.6
LIMA1-215ENST00000552823 SATB2Q9UPW6 733 aa5.08□□□□□ -1.6
LIMA1-215ENST00000552823 COA3Q9Y2R0 106 aaPredicted RBP5.08□□□□□ -1.6
LIMA1-215ENST00000552823 TMED7Q9Y3B3 224 aa5.08□□□□□ -1.6
LIMA1-215ENST00000552823 ZNF337Q9Y3M9 751 aa5.08□□□□□ -1.6
LIMA1-215ENST00000552823 FER1L5A0AVI2 2057 aa5.07□□□□□ -1.6
LIMA1-215ENST00000552823 PCNX2A6NKB5 2137 aa5.07□□□□□ -1.6
LIMA1-215ENST00000552823 IGHV3-15A0A0B4J1V0 119 aa5.07□□□□□ -1.6
LIMA1-215ENST00000552823 NOS1APO75052 506 aaPredicted RBP5.07□□□□□ -1.6
LIMA1-215ENST00000552823 RENP00797 406 aa5.07□□□□□ -1.6
LIMA1-215ENST00000552823 CD14P08571 375 aa5.07□□□□□ -1.6
LIMA1-215ENST00000552823 KLK2P20151 261 aa5.07□□□□□ -1.6
LIMA1-215ENST00000552823 SPINK2P20155 84 aa5.07□□□□□ -1.6
LIMA1-215ENST00000552823 F8A1P23610 371 aa5.07□□□□□ -1.6
LIMA1-215ENST00000552823 PPICP45877 212 aa5.07□□□□□ -1.6
LIMA1-215ENST00000552823 HTR3AP46098 478 aa5.07□□□□□ -1.6
LIMA1-215ENST00000552823 UBE2MP61081 183 aaKnown RBP5.07□□□□□ -1.6
LIMA1-215ENST00000552823 RPS18P62269 152 aaKnown RBP5.07□□□□□ -1.6
LIMA1-215ENST00000552823 ADAM8P78325 824 aa5.07□□□□□ -1.6
LIMA1-215ENST00000552823 GPLD1P80108 840 aa5.07□□□□□ -1.6
LIMA1-215ENST00000552823 GALK2Q01415 458 aa5.07□□□□□ -1.6
LIMA1-215ENST00000552823 TEKQ02763 1124 aa5.07□□□□□ -1.6
LIMA1-215ENST00000552823 SPOCK1Q08629 439 aa5.07□□□□□ -1.6
LIMA1-215ENST00000552823 FUT7Q11130 342 aa5.07□□□□□ -1.6
LIMA1-215ENST00000552823 SERTAD2Q14140 314 aa5.07□□□□□ -1.6
LIMA1-215ENST00000552823 GPR176Q14439 515 aa5.07□□□□□ -1.6
LIMA1-215ENST00000552823 ZNF74Q16587 644 aa5.07□□□□□ -1.6
LIMA1-215ENST00000552823 NKAIN1Q4KMZ8 207 aa5.07□□□□□ -1.6
LIMA1-215ENST00000552823 STPG1Q5TH74 334 aa5.07□□□□□ -1.6
LIMA1-215ENST00000552823 ZNF544Q6NX49 715 aa5.07□□□□□ -1.6
LIMA1-215ENST00000552823 ZNF574Q6ZN55 896 aaPredicted RBP5.07□□□□□ -1.6
LIMA1-215ENST00000552823 KRT77Q7Z794 578 aa5.07□□□□□ -1.6
LIMA1-215ENST00000552823 TOMM5Q8N4H5 51 aa5.07□□□□□ -1.6
LIMA1-215ENST00000552823 OR52N1Q8NH53 320 aa5.07□□□□□ -1.6
LIMA1-215ENST00000552823 NPRL2Q8WTW4 380 aa5.07□□□□□ -1.6
LIMA1-215ENST00000552823 DVL3Q92997 716 aaPredicted RBP5.07□□□□□ -1.6
LIMA1-215ENST00000552823 FAM46BQ96A09 425 aa5.07□□□□□ -1.6
LIMA1-215ENST00000552823 RFT1Q96AA3 541 aa5.07□□□□□ -1.6
LIMA1-215ENST00000552823 CITED4Q96RK1 184 aa5.07□□□□□ -1.6
LIMA1-215ENST00000552823 NDEL1Q9GZM8 345 aa5.07□□□□□ -1.6
LIMA1-215ENST00000552823 ANKRD19PQ9H560 264 aa5.07□□□□□ -1.6
LIMA1-215ENST00000552823 METTL7AQ9H8H3 244 aa5.07□□□□□ -1.6
LIMA1-215ENST00000552823 C14orf105Q9NVL8 296 aa5.07□□□□□ -1.6
LIMA1-215ENST00000552823 SLCO1C1Q9NYB5 712 aa5.07□□□□□ -1.6
LIMA1-215ENST00000552823 KLK11Q9UBX7 282 aa5.07□□□□□ -1.6
LIMA1-215ENST00000552823 CGGBP1Q9UFW8 167 aaPredicted RBP5.07□□□□□ -1.6
LIMA1-215ENST00000552823 CHRNA9Q9UGM1 479 aa5.07□□□□□ -1.6
LIMA1-215ENST00000552823 CDV3Q9UKY7 258 aaKnown RBP5.07□□□□□ -1.6
LIMA1-215ENST00000552823 EXOGQ9Y2C4 368 aaKnown RBP5.07□□□□□ -1.6
LIMA1-215ENST00000552823 FKBP7Q9Y680 259 aa5.07□□□□□ -1.6
LIMA1-215ENST00000552823 ANXA2P2A6NMY6 339 aa5.07□□□□□ -1.6
LIMA1-215ENST00000552823 SSNA1O43805 119 aa5.07□□□□□ -1.6
LIMA1-215ENST00000552823 OR2J2O76002 312 aa5.07□□□□□ -1.6
LIMA1-215ENST00000552823 AHSA1O95433 338 aa5.07□□□□□ -1.6
LIMA1-215ENST00000552823 DDAH2O95865 285 aa5.07□□□□□ -1.6
LIMA1-215ENST00000552823 WNT11O96014 354 aa5.07□□□□□ -1.6
LIMA1-215ENST00000552823 IGHA1P01876 353 aa5.07□□□□□ -1.6
LIMA1-215ENST00000552823 RLN1P04808 185 aa5.07□□□□□ -1.6
LIMA1-215ENST00000552823 ANXA2P07355 339 aaKnown RBP5.07□□□□□ -1.6
LIMA1-215ENST00000552823 RPS4Y1P22090 263 aaKnown RBP5.07□□□□□ -1.6
LIMA1-215ENST00000552823 GNALP38405 381 aa5.07□□□□□ -1.6
LIMA1-215ENST00000552823 RFC3P40938 356 aa5.07□□□□□ -1.6
LIMA1-215ENST00000552823 DIO1P49895 249 aa5.07□□□□□ -1.6
LIMA1-215ENST00000552823 BLVRAP53004 296 aa5.07□□□□□ -1.6
LIMA1-215ENST00000552823 ESPL1Q14674 2120 aa5.07□□□□□ -1.6
LIMA1-215ENST00000552823 EBPQ15125 230 aaKnown RBP5.07□□□□□ -1.6
LIMA1-215ENST00000552823 HLA-BQ31612 363 aa5.07□□□□□ -1.6
Retrieved 100 of 20,778 RNA–protein pairs in 27.6 ms