RNA–Protein interactions for RNA: ENST00000547825.5

LIMA1-203, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 3,920 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-203ENST00000547825 PDLIM5Q96HC4 596 aaKnown RBP5.04□□□□□ -1.6
LIMA1-203ENST00000547825 C20orf24Q9BUV8 137 aa5.04□□□□□ -1.6
LIMA1-203ENST00000547825 SEC61A2Q9H9S3 476 aa5.04□□□□□ -1.6
LIMA1-203ENST00000547825 TMEM45AQ9NWC5 275 aa5.04□□□□□ -1.6
LIMA1-203ENST00000547825 SPATA6Q9NWH7 488 aaPredicted RBP5.04□□□□□ -1.6
LIMA1-203ENST00000547825 PARPBPQ9NWS1 579 aa5.04□□□□□ -1.6
LIMA1-203ENST00000547825 WASF3Q9UPY6 502 aa5.04□□□□□ -1.6
LIMA1-203ENST00000547825 RBM7Q9Y580 266 aaKnown RBP5.04□□□□□ -1.6
LIMA1-203ENST00000547825 PLXNA2O75051 1894 aa5.04□□□□□ -1.6
LIMA1-203ENST00000547825 DOCK9Q9BZ29 2069 aa5.04□□□□□ -1.6
LIMA1-203ENST00000547825 A0A087WUU8 490 aa5.04□□□□□ -1.6
LIMA1-203ENST00000547825 A0A0B4J2A0 478 aa5.04□□□□□ -1.6
LIMA1-203ENST00000547825 URADA6NGE7 173 aa5.04□□□□□ -1.6
LIMA1-203ENST00000547825 OR52A4PA6NMU1 304 aa5.04□□□□□ -1.6
LIMA1-203ENST00000547825 ZAR1LA6NP61 321 aa5.04□□□□□ -1.6
LIMA1-203ENST00000547825 C1QTNF3-AMACRE9PGA6 284 aa5.04□□□□□ -1.6
LIMA1-203ENST00000547825 PRAMEF2O60811 474 aa5.04□□□□□ -1.6
LIMA1-203ENST00000547825 SOCS5O75159 536 aa5.04□□□□□ -1.6
LIMA1-203ENST00000547825 TRAPPC2P0DI81 140 aa5.04□□□□□ -1.6
LIMA1-203ENST00000547825 TRAPPC2BP0DI82 140 aa5.04□□□□□ -1.6
LIMA1-203ENST00000547825 GIMD1P0DJR0 217 aa5.04□□□□□ -1.6
LIMA1-203ENST00000547825 ZNF823P16415 610 aa5.04□□□□□ -1.6
LIMA1-203ENST00000547825 PSMA3P25788 255 aa5.04□□□□□ -1.6
LIMA1-203ENST00000547825 IMPA1P29218 277 aa5.04□□□□□ -1.6
LIMA1-203ENST00000547825 TRHRP34981 398 aaPredicted RBP5.04□□□□□ -1.6
LIMA1-203ENST00000547825 RPS27P42677 84 aaKnown RBP5.04□□□□□ -1.6
LIMA1-203ENST00000547825 CRYBB2P43320 205 aa5.04□□□□□ -1.6
LIMA1-203ENST00000547825 XCR1P46094 333 aa5.04□□□□□ -1.6
LIMA1-203ENST00000547825 SLC6A11P48066 632 aa5.04□□□□□ -1.6
LIMA1-203ENST00000547825 PPT1P50897 306 aa5.04□□□□□ -1.6
LIMA1-203ENST00000547825 MVDP53602 400 aa5.04□□□□□ -1.6
LIMA1-203ENST00000547825 PFN3P60673 137 aa5.04□□□□□ -1.6
LIMA1-203ENST00000547825 RAP2BP61225 183 aa5.04□□□□□ -1.6
LIMA1-203ENST00000547825 CXADRP78310 365 aa5.04□□□□□ -1.6
LIMA1-203ENST00000547825 ENPP2Q13822 863 aa5.04□□□□□ -1.6
LIMA1-203ENST00000547825 ZNF79Q15937 498 aa5.04□□□□□ -1.6
LIMA1-203ENST00000547825 PGGHGQ32M88 737 aa5.04□□□□□ -1.6
LIMA1-203ENST00000547825 CDONQ4KMG0 1287 aa5.04□□□□□ -1.6
LIMA1-203ENST00000547825 EIPR1Q53HC9 387 aa5.04□□□□□ -1.6
LIMA1-203ENST00000547825 RNASE10Q5GAN6 216 aaKnown RBP5.04□□□□□ -1.6
LIMA1-203ENST00000547825 EMC4Q5J8M3 183 aa5.04□□□□□ -1.6
LIMA1-203ENST00000547825 HBMQ6B0K9 141 aa5.04□□□□□ -1.6
LIMA1-203ENST00000547825 ZNF529Q6P280 563 aa5.04□□□□□ -1.6
LIMA1-203ENST00000547825 KLHL24Q6TFL4 600 aa5.04□□□□□ -1.6
LIMA1-203ENST00000547825 KIAA1324Q6UXG2 1013 aaKnown RBP5.04□□□□□ -1.6
LIMA1-203ENST00000547825 MSANTD1Q6ZTZ1 278 aa5.04□□□□□ -1.6
LIMA1-203ENST00000547825 TMPRSS7Q7RTY8 843 aa5.04□□□□□ -1.6
LIMA1-203ENST00000547825 PRSS42Q7Z5A4 293 aa5.04□□□□□ -1.6
LIMA1-203ENST00000547825 ZNF761Q86XN6 746 aaPredicted RBP5.04□□□□□ -1.6
LIMA1-203ENST00000547825 ZNF584Q8IVC4 421 aa5.04□□□□□ -1.6
LIMA1-203ENST00000547825 OR56A1Q8NGH5 318 aa5.04□□□□□ -1.6
LIMA1-203ENST00000547825 BRIX1Q8TDN6 353 aaKnown RBP5.04□□□□□ -1.6
LIMA1-203ENST00000547825 TMEM255BQ8WV15 326 aa5.04□□□□□ -1.6
LIMA1-203ENST00000547825 DCUN1D4Q92564 292 aa5.04□□□□□ -1.6
LIMA1-203ENST00000547825 HAVCR1Q96D42 359 aa5.04□□□□□ -1.6
LIMA1-203ENST00000547825 LRIG1Q96JA1 1093 aa5.04□□□□□ -1.6
LIMA1-203ENST00000547825 POTEKPQ9BYX7 375 aa5.04□□□□□ -1.6
LIMA1-203ENST00000547825 C20orf85Q9H1P6 137 aa5.04□□□□□ -1.6
LIMA1-203ENST00000547825 SPNS1Q9H2V7 528 aa5.04□□□□□ -1.6
LIMA1-203ENST00000547825 SRMSQ9H3Y6 488 aa5.04□□□□□ -1.6
LIMA1-203ENST00000547825 DPEP2Q9H4A9 486 aa5.04□□□□□ -1.6
LIMA1-203ENST00000547825 PLEKHA1Q9HB21 404 aa5.04□□□□□ -1.6
LIMA1-203ENST00000547825 PHPT1Q9NRX4 125 aaPredicted RBP5.04□□□□□ -1.6
LIMA1-203ENST00000547825 SHPKQ9UHJ6 478 aa5.04□□□□□ -1.6
LIMA1-203ENST00000547825 CDHR4A6H8M9 788 aa5.03□□□□□ -1.6
LIMA1-203ENST00000547825 LRIT2A6NDA9 550 aa5.03□□□□□ -1.6
LIMA1-203ENST00000547825 OR6C65A6NJZ3 312 aa5.03□□□□□ -1.6
LIMA1-203ENST00000547825 M0QYG6 137 aa5.03□□□□□ -1.6
LIMA1-203ENST00000547825 GPR171O14626 319 aa5.03□□□□□ -1.6
LIMA1-203ENST00000547825 PPM1DO15297 605 aa5.03□□□□□ -1.6
LIMA1-203ENST00000547825 PSPNO60542 156 aa5.03□□□□□ -1.6
LIMA1-203ENST00000547825 MPIG6BO95866 241 aa5.03□□□□□ -1.6
LIMA1-203ENST00000547825 KNG1P01042 644 aa5.03□□□□□ -1.6
LIMA1-203ENST00000547825 PRNPP04156 253 aa5.03□□□□□ -1.6
LIMA1-203ENST00000547825 FURINP09958 794 aa5.03□□□□□ -1.6
LIMA1-203ENST00000547825 OR8G3PP0DMU2 310 aa5.03□□□□□ -1.6
LIMA1-203ENST00000547825 GLI4P10075 376 aa5.03□□□□□ -1.6
LIMA1-203ENST00000547825 CTSEP14091 401 aa5.03□□□□□ -1.6
LIMA1-203ENST00000547825 IL1RNP18510 177 aa5.03□□□□□ -1.6
LIMA1-203ENST00000547825 MAKP20794 623 aa5.03□□□□□ -1.6
LIMA1-203ENST00000547825 ACHEP22303 614 aa5.03□□□□□ -1.6
LIMA1-203ENST00000547825 CERS1P27544 350 aa5.03□□□□□ -1.6
LIMA1-203ENST00000547825 MAGEB1P43366 347 aa5.03□□□□□ -1.6
LIMA1-203ENST00000547825 LIM2P55344 173 aa5.03□□□□□ -1.6
LIMA1-203ENST00000547825 CLDN20P56880 219 aa5.03□□□□□ -1.6
LIMA1-203ENST00000547825 SLC25A35Q3KQZ1 300 aa5.03□□□□□ -1.6
LIMA1-203ENST00000547825 ALG10BQ5I7T1 473 aa5.03□□□□□ -1.6
LIMA1-203ENST00000547825 C3orf38Q5JPI3 329 aa5.03□□□□□ -1.6
LIMA1-203ENST00000547825 ARHGAP40Q5TG30 622 aa5.03□□□□□ -1.6
LIMA1-203ENST00000547825 LIPIQ6XZB0 460 aa5.03□□□□□ -1.6
LIMA1-203ENST00000547825 DCUN1D3Q8IWE4 304 aa5.03□□□□□ -1.6
LIMA1-203ENST00000547825 TMEM99Q8N816 258 aa5.03□□□□□ -1.6
LIMA1-203ENST00000547825 ST7LQ8TDW4 575 aa5.03□□□□□ -1.6
LIMA1-203ENST00000547825 WBP2Q969T9 261 aa5.03□□□□□ -1.6
LIMA1-203ENST00000547825 LINC00052Q96N35 136 aa5.03□□□□□ -1.6
LIMA1-203ENST00000547825 POLDIP3Q9BY77 421 aaKnown RBP5.03□□□□□ -1.6
LIMA1-203ENST00000547825 FN3KQ9H479 309 aa5.03□□□□□ -1.6
LIMA1-203ENST00000547825 NDUFB11Q9NX14 153 aa5.03□□□□□ -1.6
LIMA1-203ENST00000547825 IL36AQ9UHA7 158 aa5.03□□□□□ -1.6
LIMA1-203ENST00000547825 OR1A2Q9Y585 309 aa5.03□□□□□ -1.6
Retrieved 100 of 20,778 RNA–protein pairs in 32.7 ms