RNA–Protein interactions for RNA: ENST00000545608.5

USP28-215, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 5

Gene USP28, Length 733 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-215ENST00000545608 CBLP22681 906 aa7.34□□□□□ -1.23
USP28-215ENST00000545608 PAX7P23759 505 aa7.34□□□□□ -1.23
USP28-215ENST00000545608 IGFBP5P24593 272 aa7.34□□□□□ -1.23
USP28-215ENST00000545608 GZMKP49863 264 aa7.34□□□□□ -1.23
USP28-215ENST00000545608 SLC18A1P54219 525 aa7.34□□□□□ -1.23
USP28-215ENST00000545608 SNRPD2P62316 118 aaKnown RBP7.34□□□□□ -1.23
USP28-215ENST00000545608 SRSF2Q01130 221 aaKnown RBP7.34□□□□□ -1.23
USP28-215ENST00000545608 EFNB3Q15768 340 aa7.34□□□□□ -1.23
USP28-215ENST00000545608 KRTAP24-1Q3LI83 254 aa7.34□□□□□ -1.23
USP28-215ENST00000545608 C3orf36Q3SXR2 165 aa7.34□□□□□ -1.23
USP28-215ENST00000545608 BEND6Q5SZJ8 279 aaPredicted RBP7.34□□□□□ -1.23
USP28-215ENST00000545608 IL17RELQ6ZVW7 336 aa7.34□□□□□ -1.23
USP28-215ENST00000545608 SLC46A3Q7Z3Q1 461 aa7.34□□□□□ -1.23
USP28-215ENST00000545608 C10orf111Q8N326 155 aa7.34□□□□□ -1.23
USP28-215ENST00000545608 MIER2Q8N344 545 aa7.34□□□□□ -1.23
USP28-215ENST00000545608 TAAR8Q969N4 342 aa7.34□□□□□ -1.23
USP28-215ENST00000545608 MSI2Q96DH6 328 aaKnown RBP7.34□□□□□ -1.23
USP28-215ENST00000545608 OXGR1Q96P68 337 aa7.34□□□□□ -1.23
USP28-215ENST00000545608 ZNF317Q96PQ6 595 aaPredicted RBP7.34□□□□□ -1.23
USP28-215ENST00000545608 PIMREGQ9BSJ6 248 aa7.34□□□□□ -1.23
USP28-215ENST00000545608 SHARPINQ9H0F6 387 aa7.34□□□□□ -1.23
USP28-215ENST00000545608 PLK3Q9H4B4 646 aa7.34□□□□□ -1.23
USP28-215ENST00000545608 ARMC7Q9H6L4 198 aa7.34□□□□□ -1.23
USP28-215ENST00000545608 CHODLQ9H9P2 273 aa7.34□□□□□ -1.23
USP28-215ENST00000545608 CACYBPQ9HB71 228 aaKnown RBP7.34□□□□□ -1.23
USP28-215ENST00000545608 GPR35Q9HC97 309 aa7.34□□□□□ -1.23
USP28-215ENST00000545608 A4GALTQ9NPC4 353 aa7.34□□□□□ -1.23
USP28-215ENST00000545608 THUMPD1Q9NXG2 353 aaKnown RBP7.34□□□□□ -1.23
USP28-215ENST00000545608 SLC25A37Q9NYZ2 338 aa7.34□□□□□ -1.23
USP28-215ENST00000545608 SLAMF8Q9P0V8 285 aa7.34□□□□□ -1.23
USP28-215ENST00000545608 LPAR3Q9UBY5 353 aa7.34□□□□□ -1.23
USP28-215ENST00000545608 RCE1Q9Y256 329 aa7.34□□□□□ -1.23
USP28-215ENST00000545608 FKBP7Q9Y680 259 aa7.34□□□□□ -1.23
USP28-215ENST00000545608 ARFGEF3Q5TH69 2177 aa7.34□□□□□ -1.23
USP28-215ENST00000545608 YLPM1P49750 1951 aaKnown RBP7.33□□□□□ -1.24
USP28-215ENST00000545608 LOC100289279A0A1B0GTE1 492 aa7.33□□□□□ -1.24
USP28-215ENST00000545608 A0A1B0GWA3 101 aa7.33□□□□□ -1.24
USP28-215ENST00000545608 LOC390937A0A1W2PQ73 354 aa7.33□□□□□ -1.24
USP28-215ENST00000545608 TMEM129A0AVI4 362 aa7.33□□□□□ -1.24
USP28-215ENST00000545608 MS4A18H0YCH9 400 aa7.33□□□□□ -1.24
USP28-215ENST00000545608 NDUFS8O00217 210 aa7.33□□□□□ -1.24
USP28-215ENST00000545608 TPST1O60507 370 aa7.33□□□□□ -1.24
USP28-215ENST00000545608 SLC43A1O75387 559 aa7.33□□□□□ -1.24
USP28-215ENST00000545608 PDE5AO76074 875 aa7.33□□□□□ -1.24
USP28-215ENST00000545608 STAMBPO95630 424 aa7.33□□□□□ -1.24
USP28-215ENST00000545608 IGFBP1P08833 259 aaPredicted RBP7.33□□□□□ -1.24
USP28-215ENST00000545608 APEHP13798 732 aaKnown RBP7.33□□□□□ -1.24
USP28-215ENST00000545608 ETS2P15036 469 aa7.33□□□□□ -1.24
USP28-215ENST00000545608 HTR2AP28223 471 aa7.33□□□□□ -1.24
USP28-215ENST00000545608 GTF2E2P29084 291 aaKnown RBP7.33□□□□□ -1.24
USP28-215ENST00000545608 GRPRP30550 384 aa7.33□□□□□ -1.24
USP28-215ENST00000545608 THBS4P35443 961 aa7.33□□□□□ -1.24
USP28-215ENST00000545608 IDH3GP51553 393 aaPredicted RBP7.33□□□□□ -1.24
USP28-215ENST00000545608 MNAT1P51948 309 aa7.33□□□□□ -1.24
USP28-215ENST00000545608 MAGOHP61326 146 aaKnown RBP7.33□□□□□ -1.24
USP28-215ENST00000545608 FADDQ13158 208 aa7.33□□□□□ -1.24
USP28-215ENST00000545608 C1DQ13901 141 aaKnown RBP7.33□□□□□ -1.24
USP28-215ENST00000545608 CEACAM16Q2WEN9 425 aa7.33□□□□□ -1.24
USP28-215ENST00000545608 MS4A18Q3C1V0 323 aa7.33□□□□□ -1.24
USP28-215ENST00000545608 IQCCQ4KMZ1 466 aa7.33□□□□□ -1.24
USP28-215ENST00000545608 PHYHD1Q5SRE7 291 aa7.33□□□□□ -1.24
USP28-215ENST00000545608 FAM166AQ6J272 317 aa7.33□□□□□ -1.24
USP28-215ENST00000545608 EPGNQ6UW88 154 aa7.33□□□□□ -1.24
USP28-215ENST00000545608 C6orf89Q6UWU4 347 aa7.33□□□□□ -1.24
USP28-215ENST00000545608 C1orf229Q6ZS94 237 aaPredicted RBP7.33□□□□□ -1.24
USP28-215ENST00000545608 C8orf86Q6ZUL3 223 aa7.33□□□□□ -1.24
USP28-215ENST00000545608 FUNDC1Q8IVP5 155 aa7.33□□□□□ -1.24
USP28-215ENST00000545608 MSRB3Q8IXL7 192 aa7.33□□□□□ -1.24
USP28-215ENST00000545608 ZCCHC24Q8N2G6 241 aaKnown RBP7.33□□□□□ -1.24
USP28-215ENST00000545608 GPR137CQ8N3F9 429 aa7.33□□□□□ -1.24
USP28-215ENST00000545608 LSMEM1Q8N8F7 131 aa7.33□□□□□ -1.24
USP28-215ENST00000545608 NUP37Q8NFH4 326 aa7.33□□□□□ -1.24
USP28-215ENST00000545608 OR4F15Q8NGB8 312 aa7.33□□□□□ -1.24
USP28-215ENST00000545608 NFKBIDQ8NI38 313 aa7.33□□□□□ -1.24
USP28-215ENST00000545608 BBS10Q8TAM1 723 aa7.33□□□□□ -1.24
USP28-215ENST00000545608 SLC35B4Q969S0 331 aa7.33□□□□□ -1.24
USP28-215ENST00000545608 TLCD1Q96CP7 247 aa7.33□□□□□ -1.24
USP28-215ENST00000545608 DOK1Q99704 481 aa7.33□□□□□ -1.24
USP28-215ENST00000545608 SOX7Q9BT81 388 aa7.33□□□□□ -1.24
USP28-215ENST00000545608 BPESC1Q9GZL8 116 aa7.33□□□□□ -1.24
USP28-215ENST00000545608 C12orf10Q9HB07 376 aa7.33□□□□□ -1.24
USP28-215ENST00000545608 NKIRAS1Q9NYS0 192 aa7.33□□□□□ -1.24
USP28-215ENST00000545608 RPS6KB2Q9UBS0 482 aa7.33□□□□□ -1.24
USP28-215ENST00000545608 REV1Q9UBZ9 1251 aa7.33□□□□□ -1.24
USP28-215ENST00000545608 KCNS2Q9ULS6 477 aa7.33□□□□□ -1.24
USP28-215ENST00000545608 TRAV36DV7A0A075B6V5 113 aa7.32□□□□□ -1.24
USP28-215ENST00000545608 IGHV2OR16-5A0A0B4J2B6 119 aa7.32□□□□□ -1.24
USP28-215ENST00000545608 LOC102725191A0A1B0GVB3 256 aa7.32□□□□□ -1.24
USP28-215ENST00000545608 SH3PXD2BA1X283 911 aa7.32□□□□□ -1.24
USP28-215ENST00000545608 LRP5LA4QPB2 252 aa7.32□□□□□ -1.24
USP28-215ENST00000545608 C5orf58C9J3I9 102 aa7.32□□□□□ -1.24
USP28-215ENST00000545608 hCG_2039718K7EN88 272 aa7.32□□□□□ -1.24
USP28-215ENST00000545608 AIM2O14862 343 aa7.32□□□□□ -1.24
USP28-215ENST00000545608 TRAF3IP2O43734 574 aaPredicted RBP7.32□□□□□ -1.24
USP28-215ENST00000545608 OR2T1O43869 369 aa7.32□□□□□ -1.24
USP28-215ENST00000545608 TPST2O60704 377 aa7.32□□□□□ -1.24
USP28-215ENST00000545608 SEC14L2O76054 403 aa7.32□□□□□ -1.24
USP28-215ENST00000545608 HPRP00739 348 aa7.32□□□□□ -1.24
USP28-215ENST00000545608 HLA-DOBP13765 273 aa7.32□□□□□ -1.24
USP28-215ENST00000545608 ZNF23P17027 643 aa7.32□□□□□ -1.24
Retrieved 100 of 20,778 RNA–protein pairs in 51 ms