RNA–Protein interactions for RNA: ENST00000535607.5

USP28-202, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 3

Gene USP28, Length 683 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-202ENST00000535607 HNF1BP35680 557 aa6.02□□□□□ -1.45
USP28-202ENST00000535607 RFC3P40938 356 aa6.02□□□□□ -1.45
USP28-202ENST00000535607 CCR6P51684 374 aa6.02□□□□□ -1.45
USP28-202ENST00000535607 CCR8P51685 355 aa6.02□□□□□ -1.45
USP28-202ENST00000535607 TAS2R50P59544 299 aa6.02□□□□□ -1.45
USP28-202ENST00000535607 KIAA1024LP59773 190 aa6.02□□□□□ -1.45
USP28-202ENST00000535607 SNRPD1P62314 119 aaKnown RBP6.02□□□□□ -1.45
USP28-202ENST00000535607 TRA2BP62995 288 aaKnown RBP6.02□□□□□ -1.45
USP28-202ENST00000535607 SLC7A9P82251 487 aa6.02□□□□□ -1.45
USP28-202ENST00000535607 ZXDBP98169 803 aa6.02□□□□□ -1.45
USP28-202ENST00000535607 TCF15Q12870 199 aa6.02□□□□□ -1.45
USP28-202ENST00000535607 MADCAM1Q13477 382 aa6.02□□□□□ -1.45
USP28-202ENST00000535607 NAE1Q13564 534 aa6.02□□□□□ -1.45
USP28-202ENST00000535607 RBMS2Q15434 407 aaKnown RBP6.02□□□□□ -1.45
USP28-202ENST00000535607 DECR1Q16698 335 aa6.02□□□□□ -1.45
USP28-202ENST00000535607 MPEG1Q2M385 716 aa6.02□□□□□ -1.45
USP28-202ENST00000535607 PGGHGQ32M88 737 aa6.02□□□□□ -1.45
USP28-202ENST00000535607 CD300EQ496F6 205 aaPredicted RBP6.02□□□□□ -1.45
USP28-202ENST00000535607 CDNFQ49AH0 187 aa6.02□□□□□ -1.45
USP28-202ENST00000535607 ATP13A5Q4VNC0 1218 aa6.02□□□□□ -1.45
USP28-202ENST00000535607 AVPI1Q5T686 147 aa6.02□□□□□ -1.45
USP28-202ENST00000535607 SDHAF4Q5VUM1 108 aa6.02□□□□□ -1.45
USP28-202ENST00000535607 AADACL4Q5VUY2 407 aa6.02□□□□□ -1.45
USP28-202ENST00000535607 SLC25A25Q6KCM7 469 aa6.02□□□□□ -1.45
USP28-202ENST00000535607 ACSM5Q6NUN0 579 aa6.02□□□□□ -1.45
USP28-202ENST00000535607 LPCAT3Q6P1A2 487 aa6.02□□□□□ -1.45
USP28-202ENST00000535607 C11orf88Q6PI97 169 aa6.02□□□□□ -1.45
USP28-202ENST00000535607 TMEM108Q6UXF1 575 aa6.02□□□□□ -1.45
USP28-202ENST00000535607 SERPINA13PQ6UXR4 307 aa6.02□□□□□ -1.45
USP28-202ENST00000535607 TMEM91Q6ZNR0 172 aa6.02□□□□□ -1.45
USP28-202ENST00000535607 MEPCEQ7L2J0 689 aaKnown RBP6.02□□□□□ -1.45
USP28-202ENST00000535607 LINGO2Q7L985 606 aa6.02□□□□□ -1.45
USP28-202ENST00000535607 C6orf120Q7Z4R8 191 aa6.02□□□□□ -1.45
USP28-202ENST00000535607 OR10K1Q8NGX5 313 aa6.02□□□□□ -1.45
USP28-202ENST00000535607 OR5AK3PQ8NH89 298 aa6.02□□□□□ -1.45
USP28-202ENST00000535607 POC1BQ8TC44 478 aa6.02□□□□□ -1.45
USP28-202ENST00000535607 ELP5Q8TE02 316 aa6.02□□□□□ -1.45
USP28-202ENST00000535607 ASB12Q8WXK4 309 aa6.02□□□□□ -1.45
USP28-202ENST00000535607 SMPDL3AQ92484 453 aa6.02□□□□□ -1.45
USP28-202ENST00000535607 THRSPQ92748 146 aa6.02□□□□□ -1.45
USP28-202ENST00000535607 ZNF707Q96C28 371 aaPredicted RBP6.02□□□□□ -1.45
USP28-202ENST00000535607 MRPS24Q96EL2 167 aaKnown RBP6.02□□□□□ -1.45
USP28-202ENST00000535607 SGCZQ96LD1 299 aa6.02□□□□□ -1.45
USP28-202ENST00000535607 CXorf58Q96LI9 332 aa6.02□□□□□ -1.45
USP28-202ENST00000535607 ABHD1Q96SE0 405 aa6.02□□□□□ -1.45
USP28-202ENST00000535607 DPH7Q9BTV6 452 aa6.02□□□□□ -1.45
USP28-202ENST00000535607 TPSD1Q9BZJ3 242 aa6.02□□□□□ -1.45
USP28-202ENST00000535607 MFFQ9GZY8 342 aa6.02□□□□□ -1.45
USP28-202ENST00000535607 OR51I1Q9H343 314 aa6.02□□□□□ -1.45
USP28-202ENST00000535607 KLHL31Q9H511 634 aa6.02□□□□□ -1.45
USP28-202ENST00000535607 HRASLSQ9HDD0 168 aa6.02□□□□□ -1.45
USP28-202ENST00000535607 CTPS2Q9NRF8 586 aa6.02□□□□□ -1.45
USP28-202ENST00000535607 MAN2C1Q9NTJ4 1040 aa6.02□□□□□ -1.45
USP28-202ENST00000535607 SEMA4GQ9NTN9 838 aa6.02□□□□□ -1.45
USP28-202ENST00000535607 NKIRAS2Q9NYR9 191 aa6.02□□□□□ -1.45
USP28-202ENST00000535607 A4GNTQ9UNA3 340 aa6.02□□□□□ -1.45
USP28-202ENST00000535607 ETV7Q9Y603 341 aa6.02□□□□□ -1.45
USP28-202ENST00000535607 DENND4AQ7Z401 1863 aa6.02□□□□□ -1.45
USP28-202ENST00000535607 NUP210Q8TEM1 1887 aaPredicted RBP6.02□□□□□ -1.45
USP28-202ENST00000535607 DENND4CQ5VZ89 1909 aa6.01□□□□□ -1.45
USP28-202ENST00000535607 KIF26AQ9ULI4 1882 aaPredicted RBP6.01□□□□□ -1.45
USP28-202ENST00000535607 FXYD6-FXYD2A0A087WZ82 144 aa6.01□□□□□ -1.45
USP28-202ENST00000535607 OR2M5A3KFT3 312 aa6.01□□□□□ -1.45
USP28-202ENST00000535607 AQP7P3A6NL99 342 aa6.01□□□□□ -1.45
USP28-202ENST00000535607 RIIAD1A6NNX1 92 aa6.01□□□□□ -1.45
USP28-202ENST00000535607 ANHXE9PGG2 379 aa6.01□□□□□ -1.45
USP28-202ENST00000535607 RAB27BO00194 218 aa6.01□□□□□ -1.45
USP28-202ENST00000535607 GAPDHSO14556 408 aaPredicted RBP6.01□□□□□ -1.45
USP28-202ENST00000535607 ARPC1BO15143 372 aaKnown RBP6.01□□□□□ -1.45
USP28-202ENST00000535607 CCL16O15467 120 aa6.01□□□□□ -1.45
USP28-202ENST00000535607 ARPC5O15511 151 aa6.01□□□□□ -1.45
USP28-202ENST00000535607 COCHO43405 550 aa6.01□□□□□ -1.45
USP28-202ENST00000535607 LANCL1O43813 399 aa6.01□□□□□ -1.45
USP28-202ENST00000535607 GPRIN2O60269 458 aa6.01□□□□□ -1.45
USP28-202ENST00000535607 RDH16O75452 317 aa6.01□□□□□ -1.45
USP28-202ENST00000535607 ATG12O94817 140 aa6.01□□□□□ -1.45
USP28-202ENST00000535607 OR2F2O95006 317 aa6.01□□□□□ -1.45
USP28-202ENST00000535607 NDUFB6O95139 128 aa6.01□□□□□ -1.45
USP28-202ENST00000535607 RCBTB2O95199 551 aa6.01□□□□□ -1.45
USP28-202ENST00000535607 TBX18O95935 607 aa6.01□□□□□ -1.45
USP28-202ENST00000535607 AGR2O95994 175 aa6.01□□□□□ -1.45
USP28-202ENST00000535607 IFNGP01579 166 aa6.01□□□□□ -1.45
USP28-202ENST00000535607 RHOP08100 348 aa6.01□□□□□ -1.45
USP28-202ENST00000535607 C1SP09871 688 aa6.01□□□□□ -1.45
USP28-202ENST00000535607 ALPIP09923 528 aa6.01□□□□□ -1.45
USP28-202ENST00000535607 CALCBP10092 127 aa6.01□□□□□ -1.45
USP28-202ENST00000535607 CXCL2P19875 107 aa6.01□□□□□ -1.45
USP28-202ENST00000535607 CNR1P21554 472 aa6.01□□□□□ -1.45
USP28-202ENST00000535607 NTSP30990 170 aa6.01□□□□□ -1.45
USP28-202ENST00000535607 CORO1AP31146 461 aaKnown RBP6.01□□□□□ -1.45
USP28-202ENST00000535607 BUD31P41223 144 aaPredicted RBP6.01□□□□□ -1.45
USP28-202ENST00000535607 RBM34P42696 430 aaKnown RBP6.01□□□□□ -1.45
USP28-202ENST00000535607 SRP9P49458 86 aaKnown RBP6.01□□□□□ -1.45
USP28-202ENST00000535607 PGFP49763 221 aa6.01□□□□□ -1.45
USP28-202ENST00000535607 GDI2P50395 445 aaKnown RBP6.01□□□□□ -1.45
USP28-202ENST00000535607 ART1P52961 327 aa6.01□□□□□ -1.45
USP28-202ENST00000535607 ARFIP1P53367 373 aa6.01□□□□□ -1.45
USP28-202ENST00000535607 ZP1P60852 638 aa6.01□□□□□ -1.45
USP28-202ENST00000535607 POLR2GP62487 172 aaKnown RBP eCLIP6.01□□□□□ -1.45
USP28-202ENST00000535607 ERVK-25P63136 954 aa6.01□□□□□ -1.45
Retrieved 100 of 20,778 RNA–protein pairs in 44.7 ms