RNA–Protein interactions for RNA: ENST00000533242.1

NEDD8-207, Transcript of neural precursor cell expressed, developmentally down-regulated 8, humanhuman

TSL 1 (best)

Gene NEDD8, Length 2,300 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD8-207ENST00000533242 ZNF649Q9BS31 505 aa7.41□□□□□ -1.22
NEDD8-207ENST00000533242 ACTRT3Q9BYD9 372 aa7.41□□□□□ -1.22
NEDD8-207ENST00000533242 MIXL1Q9H2W2 232 aa7.41□□□□□ -1.22
NEDD8-207ENST00000533242 SP140LQ9H930 580 aa7.41□□□□□ -1.22
NEDD8-207ENST00000533242 SPRR3Q9UBC9 169 aa7.41□□□□□ -1.22
NEDD8-207ENST00000533242 STUB1Q9UNE7 303 aa7.41□□□□□ -1.22
NEDD8-207ENST00000533242 PEX16Q9Y5Y5 336 aa7.41□□□□□ -1.22
NEDD8-207ENST00000533242 SPIN1Q9Y657 262 aaPredicted RBP7.41□□□□□ -1.22
NEDD8-207ENST00000533242 ZC3H12DA2A288 527 aaKnown RBP7.41□□□□□ -1.22
NEDD8-207ENST00000533242 ISPDA4D126 451 aa7.41□□□□□ -1.22
NEDD8-207ENST00000533242 FAM183AA6NL82 134 aa7.41□□□□□ -1.22
NEDD8-207ENST00000533242 MYL12BO14950 172 aa7.41□□□□□ -1.22
NEDD8-207ENST00000533242 CDRT1O95170 752 aa7.41□□□□□ -1.22
NEDD8-207ENST00000533242 GKN3PP0CG01 181 aa7.41□□□□□ -1.22
NEDD8-207ENST00000533242 EPXP11678 715 aa7.41□□□□□ -1.22
NEDD8-207ENST00000533242 PSMA1P25786 263 aaKnown RBP7.41□□□□□ -1.22
NEDD8-207ENST00000533242 HTR2AP28223 471 aa7.41□□□□□ -1.22
NEDD8-207ENST00000533242 CEACAM8P31997 349 aaPredicted RBP7.41□□□□□ -1.22
NEDD8-207ENST00000533242 SOX6P35712 828 aa7.41□□□□□ -1.22
NEDD8-207ENST00000533242 DNASE1L1P49184 302 aa7.41□□□□□ -1.22
NEDD8-207ENST00000533242 NKX2-5P52952 324 aaPredicted RBP7.41□□□□□ -1.22
NEDD8-207ENST00000533242 RGS8P57771 180 aaPredicted RBP7.41□□□□□ -1.22
NEDD8-207ENST00000533242 STXBP1P61764 594 aaKnown RBP7.41□□□□□ -1.22
NEDD8-207ENST00000533242 DCAF7P61962 342 aa7.41□□□□□ -1.22
NEDD8-207ENST00000533242 TNFRSF17Q02223 184 aa7.41□□□□□ -1.22
NEDD8-207ENST00000533242 TSPAN31Q12999 210 aa7.41□□□□□ -1.22
NEDD8-207ENST00000533242 TIMM50Q3ZCQ8 353 aa7.41□□□□□ -1.22
NEDD8-207ENST00000533242 NXNL2Q5VZ03 156 aa7.41□□□□□ -1.22
NEDD8-207ENST00000533242 SLC27A4Q6P1M0 643 aa7.41□□□□□ -1.22
NEDD8-207ENST00000533242 BHLHB9Q6PI77 547 aa7.41□□□□□ -1.22
NEDD8-207ENST00000533242 CCBE1Q6UXH8 406 aaPredicted RBP7.41□□□□□ -1.22
NEDD8-207ENST00000533242 ZNF836Q6ZNA1 936 aa7.41□□□□□ -1.22
NEDD8-207ENST00000533242 SEM1Q6ZVN7 128 aa7.41□□□□□ -1.22
NEDD8-207ENST00000533242 GALNT12Q8IXK2 581 aa7.41□□□□□ -1.22
NEDD8-207ENST00000533242 ZNF595Q8IYB9 648 aa7.41□□□□□ -1.22
NEDD8-207ENST00000533242 LRRC25Q8N386 305 aaPredicted RBP7.41□□□□□ -1.22
NEDD8-207ENST00000533242 ANKK1Q8NFD2 765 aa7.41□□□□□ -1.22
NEDD8-207ENST00000533242 ADAMTS15Q8TE58 950 aa7.41□□□□□ -1.22
NEDD8-207ENST00000533242 PIK3R3Q92569 461 aa7.41□□□□□ -1.22
NEDD8-207ENST00000533242 MCHR1Q99705 422 aa7.41□□□□□ -1.22
NEDD8-207ENST00000533242 MDFIQ99750 246 aa7.41□□□□□ -1.22
NEDD8-207ENST00000533242 SLC30A2Q9BRI3 323 aa7.41□□□□□ -1.22
NEDD8-207ENST00000533242 SPATA5L1Q9BVQ7 753 aa7.41□□□□□ -1.22
NEDD8-207ENST00000533242 PLEKHF2Q9H8W4 249 aa7.41□□□□□ -1.22
NEDD8-207ENST00000533242 ALKBH4Q9NXW9 302 aa7.41□□□□□ -1.22
NEDD8-207ENST00000533242 SEC14L4Q9UDX3 406 aa7.41□□□□□ -1.22
NEDD8-207ENST00000533242 POU2F3Q9UKI9 436 aa7.41□□□□□ -1.22
NEDD8-207ENST00000533242 SLC7A7Q9UM01 511 aa7.41□□□□□ -1.22
NEDD8-207ENST00000533242 MRPS33Q9Y291 106 aaKnown RBP7.41□□□□□ -1.22
NEDD8-207ENST00000533242 ZNF780BQ9Y6R6 833 aa7.41□□□□□ -1.22
NEDD8-207ENST00000533242 A0A075B6Q4 140 aa7.4□□□□□ -1.22
NEDD8-207ENST00000533242 LOC110117498-PIK3R3F6TDL0 507 aa7.4□□□□□ -1.22
NEDD8-207ENST00000533242 PRODHO43272 600 aa7.4□□□□□ -1.22
NEDD8-207ENST00000533242 FGF17O60258 216 aa7.4□□□□□ -1.22
NEDD8-207ENST00000533242 CT62P0C5K7 136 aa7.4□□□□□ -1.22
NEDD8-207ENST00000533242 CPEP16870 476 aa7.4□□□□□ -1.22
NEDD8-207ENST00000533242 CPN2P22792 545 aa7.4□□□□□ -1.22
NEDD8-207ENST00000533242 SDC2P34741 201 aa7.4□□□□□ -1.22
NEDD8-207ENST00000533242 MTNR1AP48039 350 aa7.4□□□□□ -1.22
NEDD8-207ENST00000533242 WNT4P56705 351 aa7.4□□□□□ -1.22
NEDD8-207ENST00000533242 PSPHP78330 225 aa7.4□□□□□ -1.22
NEDD8-207ENST00000533242 NKX6-1P78426 367 aaPredicted RBP7.4□□□□□ -1.22
NEDD8-207ENST00000533242 FABP5Q01469 135 aa7.4□□□□□ -1.22
NEDD8-207ENST00000533242 ZNF155Q12901 538 aaPredicted RBP7.4□□□□□ -1.22
NEDD8-207ENST00000533242 LARS2Q15031 903 aaKnown RBP7.4□□□□□ -1.22
NEDD8-207ENST00000533242 TRAM2Q15035 370 aa7.4□□□□□ -1.22
NEDD8-207ENST00000533242 SPANXN2Q5MJ10 180 aa7.4□□□□□ -1.22
NEDD8-207ENST00000533242 AADACL4Q5VUY2 407 aa7.4□□□□□ -1.22
NEDD8-207ENST00000533242 RNLSQ5VYX0 342 aa7.4□□□□□ -1.22
NEDD8-207ENST00000533242 VASNQ6EMK4 673 aa7.4□□□□□ -1.22
NEDD8-207ENST00000533242 ZAR1Q86SH2 424 aa7.4□□□□□ -1.22
NEDD8-207ENST00000533242 OR2L13Q8N349 312 aa7.4□□□□□ -1.22
NEDD8-207ENST00000533242 OR5L2Q8NGL0 311 aa7.4□□□□□ -1.22
NEDD8-207ENST00000533242 OR14A16Q8NHC5 309 aa7.4□□□□□ -1.22
NEDD8-207ENST00000533242 SPATA3Q8NHX4 192 aa7.4□□□□□ -1.22
NEDD8-207ENST00000533242 TEX47Q8TBZ9 253 aa7.4□□□□□ -1.22
NEDD8-207ENST00000533242 DAZLQ92904 295 aaKnown RBP7.4□□□□□ -1.22
NEDD8-207ENST00000533242 SLC41A3Q96GZ6 507 aa7.4□□□□□ -1.22
NEDD8-207ENST00000533242 PRSS27Q9BQR3 290 aa7.4□□□□□ -1.22
NEDD8-207ENST00000533242 C3orf14Q9HBI5 128 aa7.4□□□□□ -1.22
NEDD8-207ENST00000533242 C20orf141Q9NUB4 165 aa7.4□□□□□ -1.22
NEDD8-207ENST00000533242 DAPP1Q9UN19 280 aa7.4□□□□□ -1.22
NEDD8-207ENST00000533242 ZNF443Q9Y2A4 671 aaPredicted RBP7.4□□□□□ -1.22
NEDD8-207ENST00000533242 FLNAP21333 2647 aaKnown RBP7.4□□□□□ -1.22
NEDD8-207ENST00000533242 LINC00854A0A1B0GVQ3 168 aa7.4□□□□□ -1.23
NEDD8-207ENST00000533242 TUBAL3A6NHL2 446 aa7.4□□□□□ -1.23
NEDD8-207ENST00000533242 KIAA1324LA8MWY0 1029 aaPredicted RBP7.4□□□□□ -1.23
NEDD8-207ENST00000533242 AHRRA9YTQ3 701 aa7.4□□□□□ -1.23
NEDD8-207ENST00000533242 KDM4EB2RXH2 506 aaPredicted RBP7.4□□□□□ -1.23
NEDD8-207ENST00000533242 SURF4O15260 269 aa7.4□□□□□ -1.23
NEDD8-207ENST00000533242 GUCY1B2O75343 617 aa7.4□□□□□ -1.23
NEDD8-207ENST00000533242 LY6G6DO95868 133 aa7.4□□□□□ -1.23
NEDD8-207ENST00000533242 CCL3P10147 92 aa7.4□□□□□ -1.23
NEDD8-207ENST00000533242 CD53P19397 219 aa7.4□□□□□ -1.23
NEDD8-207ENST00000533242 PRKAR1BP31321 381 aa7.4□□□□□ -1.23
NEDD8-207ENST00000533242 TIMP3P35625 211 aa7.4□□□□□ -1.23
NEDD8-207ENST00000533242 RFX2P48378 723 aa7.4□□□□□ -1.23
NEDD8-207ENST00000533242 SORDQ00796 357 aa7.4□□□□□ -1.23
NEDD8-207ENST00000533242 HNRNPA0Q13151 305 aaKnown RBP7.4□□□□□ -1.23
NEDD8-207ENST00000533242 EXOSC7Q15024 291 aaKnown RBP7.4□□□□□ -1.23
Retrieved 100 of 20,778 RNA–protein pairs in 30.6 ms