RNA–Protein interactions for RNA: ENST00000531873.5

CD44-234, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 584 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-234ENST00000531873 GPD1LQ8N335 351 aa2.13□□□□□ -2.07
CD44-234ENST00000531873 FBXL16Q8N461 479 aa2.13□□□□□ -2.07
CD44-234ENST00000531873 C11orf42Q8N5U0 333 aa2.13□□□□□ -2.07
CD44-234ENST00000531873 LINC00612Q8N6U2 182 aa2.13□□□□□ -2.07
CD44-234ENST00000531873 ZNF557Q8N988 423 aaPredicted RBP2.13□□□□□ -2.07
CD44-234ENST00000531873 FNDC5Q8NAU1 212 aa2.13□□□□□ -2.07
CD44-234ENST00000531873 FBXL13Q8NEE6 735 aa2.13□□□□□ -2.07
CD44-234ENST00000531873 BPIFCQ8NFQ6 507 aa2.13□□□□□ -2.07
CD44-234ENST00000531873 OR2AP1Q8NGE2 309 aa2.13□□□□□ -2.07
CD44-234ENST00000531873 OR9G1Q8NH87 305 aa2.13□□□□□ -2.07
CD44-234ENST00000531873 NEIL3Q8TAT5 605 aa2.13□□□□□ -2.07
CD44-234ENST00000531873 FAM81AQ8TBF8 368 aa2.13□□□□□ -2.07
CD44-234ENST00000531873 GPR151Q8TDV0 419 aa2.13□□□□□ -2.07
CD44-234ENST00000531873 TSEN15Q8WW01 171 aaKnown RBP2.13□□□□□ -2.07
CD44-234ENST00000531873 ACOT11Q8WXI4 607 aaPredicted RBP2.13□□□□□ -2.07
CD44-234ENST00000531873 HSFY1Q96LI6 401 aa2.13□□□□□ -2.07
CD44-234ENST00000531873 SORT1Q99523 831 aa2.13□□□□□ -2.07
CD44-234ENST00000531873 SH3GL1Q99961 368 aa2.13□□□□□ -2.07
CD44-234ENST00000531873 PYGO2Q9BRQ0 406 aa2.13□□□□□ -2.07
CD44-234ENST00000531873 TMEM246Q9BRR3 403 aa2.13□□□□□ -2.07
CD44-234ENST00000531873 C20orf24Q9BUV8 137 aa2.13□□□□□ -2.07
CD44-234ENST00000531873 MFFQ9GZY8 342 aa2.13□□□□□ -2.07
CD44-234ENST00000531873 DEFB127Q9H1M4 99 aa2.13□□□□□ -2.07
CD44-234ENST00000531873 OR51M1Q9H341 326 aa2.13□□□□□ -2.07
CD44-234ENST00000531873 AUNIPQ9H7T9 357 aa2.13□□□□□ -2.07
CD44-234ENST00000531873 ISG20L2Q9H9L3 353 aaKnown RBP2.13□□□□□ -2.07
CD44-234ENST00000531873 SH2D2AQ9NP31 389 aa2.13□□□□□ -2.07
CD44-234ENST00000531873 CLCF1Q9UBD9 225 aa2.13□□□□□ -2.07
CD44-234ENST00000531873 BTNL2Q9UIR0 455 aa2.13□□□□□ -2.07
CD44-234ENST00000531873 LSM7Q9UK45 103 aaKnown RBP2.13□□□□□ -2.07
CD44-234ENST00000531873 NUP50Q9UKX7 468 aa2.13□□□□□ -2.07
CD44-234ENST00000531873 PSME2Q9UL46 239 aa2.13□□□□□ -2.07
CD44-234ENST00000531873 TRAF3IP3Q9Y228 551 aa2.13□□□□□ -2.07
CD44-234ENST00000531873 SMCO3A2RU48 225 aa2.12□□□□□ -2.07
CD44-234ENST00000531873 ERVV-1B6SEH8 477 aa2.12□□□□□ -2.07
CD44-234ENST00000531873 TNFSF11O14788 317 aa2.12□□□□□ -2.07
CD44-234ENST00000531873 LSM1O15116 133 aaKnown RBP2.12□□□□□ -2.07
CD44-234ENST00000531873 AGPAT2O15120 278 aa2.12□□□□□ -2.07
CD44-234ENST00000531873 CLPXO76031 633 aa2.12□□□□□ -2.07
CD44-234ENST00000531873 DCKP27707 260 aa2.12□□□□□ -2.07
CD44-234ENST00000531873 BTCP35070 178 aa2.12□□□□□ -2.07
CD44-234ENST00000531873 TNNT2P45379 298 aaPredicted RBP2.12□□□□□ -2.07
CD44-234ENST00000531873 TFPI2P48307 235 aa2.12□□□□□ -2.07
CD44-234ENST00000531873 TMED10P49755 219 aaKnown RBP2.12□□□□□ -2.07
CD44-234ENST00000531873 CCNHP51946 323 aaPredicted RBP2.12□□□□□ -2.07
CD44-234ENST00000531873 APOC4P55056 127 aa2.12□□□□□ -2.07
CD44-234ENST00000531873 DLX1P56177 255 aa2.12□□□□□ -2.07
CD44-234ENST00000531873 C21orf59P57076 290 aa2.12□□□□□ -2.07
CD44-234ENST00000531873 PDIA2Q13087 525 aaKnown RBP2.12□□□□□ -2.07
CD44-234ENST00000531873 SELENBP1Q13228 472 aa2.12□□□□□ -2.07
CD44-234ENST00000531873 ATP6AP1Q15904 470 aa2.12□□□□□ -2.07
CD44-234ENST00000531873 KYAT1Q16773 422 aa2.12□□□□□ -2.07
CD44-234ENST00000531873 EOGTQ5NDL2 527 aa2.12□□□□□ -2.07
CD44-234ENST00000531873 CASC10Q5T4H9 136 aa2.12□□□□□ -2.07
CD44-234ENST00000531873 GPR157Q5UAW9 335 aa2.12□□□□□ -2.07
CD44-234ENST00000531873 SCARA5Q6ZMJ2 495 aa2.12□□□□□ -2.07
CD44-234ENST00000531873 ZNF620Q6ZNG0 422 aa2.12□□□□□ -2.07
CD44-234ENST00000531873 ZNF571Q7Z3V5 609 aaPredicted RBP2.12□□□□□ -2.07
CD44-234ENST00000531873 TMEM179BQ7Z7N9 219 aa2.12□□□□□ -2.07
CD44-234ENST00000531873 LHFPL3Q86UP9 236 aa2.12□□□□□ -2.07
CD44-234ENST00000531873 PLA2G4DQ86XP0 818 aa2.12□□□□□ -2.07
CD44-234ENST00000531873 KATNAL2Q8IYT4 538 aa2.12□□□□□ -2.07
CD44-234ENST00000531873 PUSL1Q8N0Z8 303 aaKnown RBP2.12□□□□□ -2.07
CD44-234ENST00000531873 PQLC3Q8N755 202 aa2.12□□□□□ -2.07
CD44-234ENST00000531873 BBOF1Q8ND07 529 aa2.12□□□□□ -2.07
CD44-234ENST00000531873 ARPC1AQ92747 370 aa2.12□□□□□ -2.07
CD44-234ENST00000531873 PEX13Q92968 403 aa2.12□□□□□ -2.07
CD44-234ENST00000531873 DUS3LQ96G46 650 aaKnown RBP2.12□□□□□ -2.07
CD44-234ENST00000531873 ZNF578Q96N58 590 aaPredicted RBP2.12□□□□□ -2.07
CD44-234ENST00000531873 ATP5SQ99766 215 aa2.12□□□□□ -2.07
CD44-234ENST00000531873 SLC29A1Q99808 456 aa2.12□□□□□ -2.07
CD44-234ENST00000531873 PELOQ9BRX2 385 aaKnown RBP2.12□□□□□ -2.07
CD44-234ENST00000531873 GBA3Q9H227 469 aa2.12□□□□□ -2.07
CD44-234ENST00000531873 CWH43Q9H720 699 aa2.12□□□□□ -2.07
CD44-234ENST00000531873 FGF20Q9NP95 211 aaPredicted RBP2.12□□□□□ -2.07
CD44-234ENST00000531873 AIG1Q9NVV5 245 aa2.12□□□□□ -2.07
CD44-234ENST00000531873 PTTG3PQ9NZH4 202 aa2.12□□□□□ -2.07
CD44-234ENST00000531873 KCNIP1Q9NZI2 227 aa2.12□□□□□ -2.07
CD44-234ENST00000531873 TBC1D24Q9ULP9 559 aa2.12□□□□□ -2.07
CD44-234ENST00000531873 VSIG4Q9Y279 399 aa2.12□□□□□ -2.07
CD44-234ENST00000531873 NEUROG3Q9Y4Z2 214 aa2.12□□□□□ -2.07
CD44-234ENST00000531873 CECR2Q9BXF3 1484 aa2.12□□□□□ -2.07
CD44-234ENST00000531873 DENND4AQ7Z401 1863 aa2.11□□□□□ -2.07
CD44-234ENST00000531873 CNTNAP1P78357 1384 aa2.11□□□□□ -2.07
CD44-234ENST00000531873 TRAV25A0A0B4J276 109 aa2.11□□□□□ -2.07
CD44-234ENST00000531873 TEX46H3BTG2 121 aa2.11□□□□□ -2.07
CD44-234ENST00000531873 CASQ2O14958 399 aaPredicted RBP2.11□□□□□ -2.07
CD44-234ENST00000531873 FGGP02679 453 aa2.11□□□□□ -2.07
CD44-234ENST00000531873 STAG3L3P0CL85 134 aa2.11□□□□□ -2.07
CD44-234ENST00000531873 TCN1P20061 433 aaPredicted RBP2.11□□□□□ -2.07
CD44-234ENST00000531873 TUBG1P23258 451 aa2.11□□□□□ -2.07
CD44-234ENST00000531873 CMA1P23946 247 aa2.11□□□□□ -2.07
CD44-234ENST00000531873 HSD17B2P37059 387 aa2.11□□□□□ -2.07
CD44-234ENST00000531873 AQP2P41181 271 aa2.11□□□□□ -2.07
CD44-234ENST00000531873 GLP1RP43220 463 aa2.11□□□□□ -2.07
CD44-234ENST00000531873 NAMPTP43490 491 aa2.11□□□□□ -2.07
CD44-234ENST00000531873 OR1G1P47890 313 aa2.11□□□□□ -2.07
CD44-234ENST00000531873 ARRB1P49407 418 aaPredicted RBP2.11□□□□□ -2.07
CD44-234ENST00000531873 RGS8P57771 180 aaPredicted RBP2.11□□□□□ -2.07
CD44-234ENST00000531873 RAB10P61026 200 aa2.11□□□□□ -2.07
Retrieved 100 of 20,778 RNA–protein pairs in 30.8 ms