RNA–Protein interactions for RNA: ENST00000531032.5

VPS28-214, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 1 (best)

Gene VPS28, Length 573 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-214ENST00000531032 C5orf58C9J3I9 102 aa9.81□□□□□ -0.84
VPS28-214ENST00000531032 LILRA1O75019 489 aa9.81□□□□□ -0.84
VPS28-214ENST00000531032 TGDSO95455 350 aa9.81□□□□□ -0.84
VPS28-214ENST00000531032 ARAFP10398 606 aa9.81□□□□□ -0.84
VPS28-214ENST00000531032 CHN2P52757 468 aa9.81□□□□□ -0.84
VPS28-214ENST00000531032 AQP5P55064 265 aa9.81□□□□□ -0.84
VPS28-214ENST00000531032 NPRL3Q12980 569 aa9.81□□□□□ -0.84
VPS28-214ENST00000531032 MFSD13AQ14CX5 517 aa9.81□□□□□ -0.84
VPS28-214ENST00000531032 ALG10BQ5I7T1 473 aa9.81□□□□□ -0.84
VPS28-214ENST00000531032 PHYHD1Q5SRE7 291 aa9.81□□□□□ -0.84
VPS28-214ENST00000531032 GCNT6Q5T4J0 391 aa9.81□□□□□ -0.84
VPS28-214ENST00000531032 ULK3Q6PHR2 472 aa9.81□□□□□ -0.84
VPS28-214ENST00000531032 EPGNQ6UW88 154 aa9.81□□□□□ -0.84
VPS28-214ENST00000531032 ZNF627Q7L945 461 aa9.81□□□□□ -0.84
VPS28-214ENST00000531032 SPATA21Q7Z572 469 aa9.81□□□□□ -0.84
VPS28-214ENST00000531032 MDP1Q86V88 176 aa9.81□□□□□ -0.84
VPS28-214ENST00000531032 C20orf196Q8IYI0 205 aa9.81□□□□□ -0.84
VPS28-214ENST00000531032 ZCCHC24Q8N2G6 241 aaKnown RBP9.81□□□□□ -0.84
VPS28-214ENST00000531032 C10orf111Q8N326 155 aa9.81□□□□□ -0.84
VPS28-214ENST00000531032 ZNF786Q8N393 782 aa9.81□□□□□ -0.84
VPS28-214ENST00000531032 OR6S1Q8NH40 331 aa9.81□□□□□ -0.84
VPS28-214ENST00000531032 NFKBIDQ8NI38 313 aa9.81□□□□□ -0.84
VPS28-214ENST00000531032 CKAP2Q8WWK9 683 aa9.81□□□□□ -0.84
VPS28-214ENST00000531032 HPS1Q92902 700 aa9.81□□□□□ -0.84
VPS28-214ENST00000531032 VIPAS39Q9H9C1 493 aa9.81□□□□□ -0.84
VPS28-214ENST00000531032 NOX3Q9HBY0 568 aa9.81□□□□□ -0.84
VPS28-214ENST00000531032 B3GNT2Q9NY97 397 aa9.81□□□□□ -0.84
VPS28-214ENST00000531032 TESQ9UGI8 421 aaKnown RBP9.81□□□□□ -0.84
VPS28-214ENST00000531032 USP22Q9UPT9 525 aa9.81□□□□□ -0.84
VPS28-214ENST00000531032 CORINQ9Y5Q5 1042 aa9.81□□□□□ -0.84
VPS28-214ENST00000531032 A0A087WUJ7 227 aa9.8□□□□□ -0.84
VPS28-214ENST00000531032 A0A0B4J2E0 115 aa9.8□□□□□ -0.84
VPS28-214ENST00000531032 A0A1B0GX12 115 aa9.8□□□□□ -0.84
VPS28-214ENST00000531032 MS4A18H0YCH9 400 aa9.8□□□□□ -0.84
VPS28-214ENST00000531032 M0R3G1 203 aa9.8□□□□□ -0.84
VPS28-214ENST00000531032 TPST1O60507 370 aa9.8□□□□□ -0.84
VPS28-214ENST00000531032 SEC14L2O76054 403 aa9.8□□□□□ -0.84
VPS28-214ENST00000531032 HPRP00739 348 aa9.8□□□□□ -0.84
VPS28-214ENST00000531032 HLA-DOBP13765 273 aa9.8□□□□□ -0.84
VPS28-214ENST00000531032 H2AFXP16104 143 aaPredicted RBP9.8□□□□□ -0.84
VPS28-214ENST00000531032 NR4A1P22736 598 aa9.8□□□□□ -0.84
VPS28-214ENST00000531032 IL2RGP31785 369 aa9.8□□□□□ -0.84
VPS28-214ENST00000531032 CDK6Q00534 326 aa9.8□□□□□ -0.84
VPS28-214ENST00000531032 SRSF2Q01130 221 aaKnown RBP9.8□□□□□ -0.84
VPS28-214ENST00000531032 SNTB2Q13425 540 aaKnown RBP9.8□□□□□ -0.84
VPS28-214ENST00000531032 RIN1Q13671 783 aa9.8□□□□□ -0.84
VPS28-214ENST00000531032 DAG1Q14118 895 aa9.8□□□□□ -0.84
VPS28-214ENST00000531032 SQLEQ14534 574 aa9.8□□□□□ -0.84
VPS28-214ENST00000531032 CR1LQ2VPA4 569 aa9.8□□□□□ -0.84
VPS28-214ENST00000531032 MS4A18Q3C1V0 323 aa9.8□□□□□ -0.84
VPS28-214ENST00000531032 GLIPR1L2Q4G1C9 344 aa9.8□□□□□ -0.84
VPS28-214ENST00000531032 REEP3Q6NUK4 255 aa9.8□□□□□ -0.84
VPS28-214ENST00000531032 NHLRC1Q6VVB1 395 aa9.8□□□□□ -0.84
VPS28-214ENST00000531032 KRT73Q86Y46 540 aa9.8□□□□□ -0.84
VPS28-214ENST00000531032 FUNDC1Q8IVP5 155 aa9.8□□□□□ -0.84
VPS28-214ENST00000531032 UEVLDQ8IX04 471 aa9.8□□□□□ -0.84
VPS28-214ENST00000531032 CDK20Q8IZL9 346 aa9.8□□□□□ -0.84
VPS28-214ENST00000531032 SCAIQ8N9R8 606 aa9.8□□□□□ -0.84
VPS28-214ENST00000531032 SLC47A1Q96FL8 570 aa9.8□□□□□ -0.84
VPS28-214ENST00000531032 LRR1Q96L50 414 aa9.8□□□□□ -0.84
VPS28-214ENST00000531032 ZNF75AQ96N20 296 aa9.8□□□□□ -0.84
VPS28-214ENST00000531032 EPYCQ99645 322 aa9.8□□□□□ -0.84
VPS28-214ENST00000531032 CCDC28BQ9BUN5 200 aa9.8□□□□□ -0.84
VPS28-214ENST00000531032 SPATA5L1Q9BVQ7 753 aa9.8□□□□□ -0.84
VPS28-214ENST00000531032 DYNLRB1Q9NP97 96 aa9.8□□□□□ -0.84
VPS28-214ENST00000531032 SLC52A3Q9NQ40 469 aa9.8□□□□□ -0.84
VPS28-214ENST00000531032 TRBV5-3A0A0A0MS03 114 aa9.79□□□□□ -0.84
VPS28-214ENST00000531032 SH3PXD2BA1X283 911 aa9.79□□□□□ -0.84
VPS28-214ENST00000531032 PRORSD1PA6NEY8 169 aa9.79□□□□□ -0.84
VPS28-214ENST00000531032 HLA-HP01893 362 aa9.79□□□□□ -0.84
VPS28-214ENST00000531032 BGLAPP02818 100 aa9.79□□□□□ -0.84
VPS28-214ENST00000531032 ADRA2AP08913 450 aa9.79□□□□□ -0.84
VPS28-214ENST00000531032 ZNF35P13682 527 aa9.79□□□□□ -0.84
VPS28-214ENST00000531032 NQO1P15559 274 aaKnown RBP9.79□□□□□ -0.84
VPS28-214ENST00000531032 ZNF14P17017 642 aaPredicted RBP9.79□□□□□ -0.84
VPS28-214ENST00000531032 CBLP22681 906 aa9.79□□□□□ -0.84
VPS28-214ENST00000531032 PPIBP23284 216 aaKnown RBP9.79□□□□□ -0.84
VPS28-214ENST00000531032 APEX1P27695 318 aaKnown RBP9.79□□□□□ -0.84
VPS28-214ENST00000531032 CAPZA2P47755 286 aa9.79□□□□□ -0.84
VPS28-214ENST00000531032 EVX1P49640 407 aa9.79□□□□□ -0.84
VPS28-214ENST00000531032 IDH3AP50213 366 aa9.79□□□□□ -0.84
VPS28-214ENST00000531032 IL1RL1Q01638 556 aa9.79□□□□□ -0.84
VPS28-214ENST00000531032 PUDPQ08623 228 aa9.79□□□□□ -0.84
VPS28-214ENST00000531032 ADRM1Q16186 407 aa9.79□□□□□ -0.84
VPS28-214ENST00000531032 MSMPQ1L6U9 139 aa9.79□□□□□ -0.84
VPS28-214ENST00000531032 GSG1Q2KHT4 349 aa9.79□□□□□ -0.84
VPS28-214ENST00000531032 CARD17Q5XLA6 110 aa9.79□□□□□ -0.84
VPS28-214ENST00000531032 KRT80Q6KB66 452 aa9.79□□□□□ -0.84
VPS28-214ENST00000531032 BLOC1S3Q6QNY0 202 aa9.79□□□□□ -0.84
VPS28-214ENST00000531032 WDFY1Q8IWB7 410 aa9.79□□□□□ -0.84
VPS28-214ENST00000531032 LINC01356Q8N9X3 169 aa9.79□□□□□ -0.84
VPS28-214ENST00000531032 UBASH3BQ8TF42 649 aa9.79□□□□□ -0.84
VPS28-214ENST00000531032 MRPL24Q96A35 216 aaKnown RBP9.79□□□□□ -0.84
VPS28-214ENST00000531032 SPDL1Q96EA4 605 aa9.79□□□□□ -0.84
VPS28-214ENST00000531032 C1orf159Q96HA4 380 aa9.79□□□□□ -0.84
VPS28-214ENST00000531032 MS4A3Q96HJ5 214 aa9.79□□□□□ -0.84
VPS28-214ENST00000531032 MAGEB18Q96M61 343 aa9.79□□□□□ -0.84
VPS28-214ENST00000531032 EBF4Q9BQW3 602 aa9.79□□□□□ -0.84
VPS28-214ENST00000531032 EMC6Q9BV81 110 aa9.79□□□□□ -0.84
VPS28-214ENST00000531032 ASPNQ9BXN1 380 aa9.79□□□□□ -0.84
Retrieved 100 of 20,778 RNA–protein pairs in 41.6 ms