RNA–Protein interactions for RNA: ENST00000526271.2

CPSF1-201, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 3

Gene CPSF1, Length 697 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-201ENST00000526271 OR6C65A6NJZ3 312 aa12.26□□□□□ -0.45
CPSF1-201ENST00000526271 M0R082 166 aa12.26□□□□□ -0.45
CPSF1-201ENST00000526271 RP2O75695 350 aa12.26□□□□□ -0.45
CPSF1-201ENST00000526271 RGS9O75916 674 aaPredicted RBP12.26□□□□□ -0.45
CPSF1-201ENST00000526271 KRT33AO76009 404 aa12.26□□□□□ -0.45
CPSF1-201ENST00000526271 VAMP5O95183 116 aa12.26□□□□□ -0.45
CPSF1-201ENST00000526271 HLA-HP01893 362 aa12.26□□□□□ -0.45
CPSF1-201ENST00000526271 BCHEP06276 602 aa12.26□□□□□ -0.45
CPSF1-201ENST00000526271 HOXB1P14653 301 aaPredicted RBP12.26□□□□□ -0.45
CPSF1-201ENST00000526271 ZNF14P17017 642 aaPredicted RBP12.26□□□□□ -0.45
CPSF1-201ENST00000526271 TCN1P20061 433 aaPredicted RBP12.26□□□□□ -0.45
CPSF1-201ENST00000526271 NR4A1P22736 598 aa12.26□□□□□ -0.45
CPSF1-201ENST00000526271 LMO4P61968 165 aa12.26□□□□□ -0.45
CPSF1-201ENST00000526271 NPRL3Q12980 569 aa12.26□□□□□ -0.45
CPSF1-201ENST00000526271 MAD2L1BPQ15013 274 aaPredicted RBP12.26□□□□□ -0.45
CPSF1-201ENST00000526271 LIN52Q52LA3 116 aa12.26□□□□□ -0.45
CPSF1-201ENST00000526271 METTL21CQ5VZV1 264 aa12.26□□□□□ -0.45
CPSF1-201ENST00000526271 NXNQ6DKJ4 435 aa12.26□□□□□ -0.45
CPSF1-201ENST00000526271 C6orf89Q6UWU4 347 aa12.26□□□□□ -0.45
CPSF1-201ENST00000526271 ABHD12BQ7Z5M8 362 aaPredicted RBP12.26□□□□□ -0.45
CPSF1-201ENST00000526271 ZNF584Q8IVC4 421 aa12.26□□□□□ -0.45
CPSF1-201ENST00000526271 PEX5LQ8IYB4 626 aa12.26□□□□□ -0.45
CPSF1-201ENST00000526271 ZNF440Q8IYI8 595 aa12.26□□□□□ -0.45
CPSF1-201ENST00000526271 ZNF540Q8NDQ6 660 aa12.26□□□□□ -0.45
CPSF1-201ENST00000526271 ZNF417Q8TAU3 575 aa12.26□□□□□ -0.45
CPSF1-201ENST00000526271 C10orf82Q8WW14 230 aa12.26□□□□□ -0.45
CPSF1-201ENST00000526271 SLC25A36Q96CQ1 311 aa12.26□□□□□ -0.45
CPSF1-201ENST00000526271 TMEM19Q96HH6 336 aa12.26□□□□□ -0.45
CPSF1-201ENST00000526271 TXNDC15Q96J42 360 aa12.26□□□□□ -0.45
CPSF1-201ENST00000526271 CCT8L2Q96SF2 557 aa12.26□□□□□ -0.45
CPSF1-201ENST00000526271 ZNF587Q96SQ5 575 aaPredicted RBP12.26□□□□□ -0.45
CPSF1-201ENST00000526271 ELAC2Q9BQ52 826 aaKnown RBP12.26□□□□□ -0.45
CPSF1-201ENST00000526271 TAPBPLQ9BX59 468 aa12.26□□□□□ -0.45
CPSF1-201ENST00000526271 TMEM120AQ9BXJ8 343 aa12.26□□□□□ -0.45
CPSF1-201ENST00000526271 NSRP1Q9H0G5 558 aaKnown RBP12.26□□□□□ -0.45
CPSF1-201ENST00000526271 NARFLQ9H6Q4 476 aa12.26□□□□□ -0.45
CPSF1-201ENST00000526271 CRLF2Q9HC73 371 aa12.26□□□□□ -0.45
CPSF1-201ENST00000526271 UBDO15205 165 aa12.25□□□□□ -0.45
CPSF1-201ENST00000526271 SNX3O60493 162 aa12.25□□□□□ -0.45
CPSF1-201ENST00000526271 TPST2O60704 377 aa12.25□□□□□ -0.45
CPSF1-201ENST00000526271 IFNGR1P15260 489 aa12.25□□□□□ -0.45
CPSF1-201ENST00000526271 CBLP22681 906 aa12.25□□□□□ -0.45
CPSF1-201ENST00000526271 SRP14P37108 136 aaKnown RBP12.25□□□□□ -0.45
CPSF1-201ENST00000526271 ALDH3B1P43353 468 aa12.25□□□□□ -0.45
CPSF1-201ENST00000526271 MRPL19P49406 292 aaKnown RBP12.25□□□□□ -0.45
CPSF1-201ENST00000526271 SH3BGRP55822 239 aaPredicted RBP12.25□□□□□ -0.45
CPSF1-201ENST00000526271 IL1RL1Q01638 556 aa12.25□□□□□ -0.45
CPSF1-201ENST00000526271 POU3F1Q03052 451 aaPredicted RBP12.25□□□□□ -0.45
CPSF1-201ENST00000526271 DAG1Q14118 895 aa12.25□□□□□ -0.45
CPSF1-201ENST00000526271 FXNQ16595 210 aa12.25□□□□□ -0.45
CPSF1-201ENST00000526271 GLIPR1L2Q4G1C9 344 aa12.25□□□□□ -0.45
CPSF1-201ENST00000526271 VPS37AQ8NEZ2 397 aa12.25□□□□□ -0.45
CPSF1-201ENST00000526271 ANKK1Q8NFD2 765 aa12.25□□□□□ -0.45
CPSF1-201ENST00000526271 OR9I1Q8NGQ6 314 aa12.25□□□□□ -0.45
CPSF1-201ENST00000526271 MAL2Q969L2 176 aa12.25□□□□□ -0.45
CPSF1-201ENST00000526271 MRPL24Q96A35 216 aaKnown RBP12.25□□□□□ -0.45
CPSF1-201ENST00000526271 OXGR1Q96P68 337 aa12.25□□□□□ -0.45
CPSF1-201ENST00000526271 KCNS3Q9BQ31 491 aa12.25□□□□□ -0.45
CPSF1-201ENST00000526271 SPATA9Q9BWV2 254 aa12.25□□□□□ -0.45
CPSF1-201ENST00000526271 METTL17Q9H7H0 456 aaPredicted RBP12.25□□□□□ -0.45
CPSF1-201ENST00000526271 LPAR2Q9HBW0 351 aa12.25□□□□□ -0.45
CPSF1-201ENST00000526271 FZR1Q9UM11 496 aa12.25□□□□□ -0.45
CPSF1-201ENST00000526271 SPEF1Q9Y4P9 236 aa12.25□□□□□ -0.45
CPSF1-201ENST00000526271 LRRN3E7EW58 273 aa12.24□□□□□ -0.45
CPSF1-201ENST00000526271 AHSA1O95433 338 aa12.24□□□□□ -0.45
CPSF1-201ENST00000526271 GRPRP30550 384 aa12.24□□□□□ -0.45
CPSF1-201ENST00000526271 ARR3P36575 388 aa12.24□□□□□ -0.45
CPSF1-201ENST00000526271 COMPP49747 757 aaPredicted RBP12.24□□□□□ -0.45
CPSF1-201ENST00000526271 SF3A3Q12874 501 aaKnown RBP eCLIP12.24□□□□□ -0.458e-12■■■■■ 42
CPSF1-201ENST00000526271 HNRNPA0Q13151 305 aaKnown RBP12.24□□□□□ -0.45
CPSF1-201ENST00000526271 ZNF627Q7L945 461 aa12.24□□□□□ -0.45
CPSF1-201ENST00000526271 C20orf196Q8IYI0 205 aa12.24□□□□□ -0.45
CPSF1-201ENST00000526271 SLC41A3Q96GZ6 507 aa12.24□□□□□ -0.45
CPSF1-201ENST00000526271 SYT3Q9BQG1 590 aa12.24□□□□□ -0.45
CPSF1-201ENST00000526271 EMC6Q9BV81 110 aa12.24□□□□□ -0.45
CPSF1-201ENST00000526271 ZNF385DQ9H6B1 395 aa12.24□□□□□ -0.45
CPSF1-201ENST00000526271 TPT1P8Q9HAU6 139 aa12.24□□□□□ -0.45
CPSF1-201ENST00000526271 TREM2Q9NZC2 230 aa12.24□□□□□ -0.45
CPSF1-201ENST00000526271 P2RX2Q9UBL9 471 aa12.24□□□□□ -0.45
CPSF1-201ENST00000526271 LOC102725191A0A1B0GVB3 256 aa12.23□□□□□ -0.45
CPSF1-201ENST00000526271 A0A1B0GWA3 101 aa12.23□□□□□ -0.45
CPSF1-201ENST00000526271 ZNF99A8MXY4 864 aaPredicted RBP12.23□□□□□ -0.45
CPSF1-201ENST00000526271 M0R3G1 203 aa12.23□□□□□ -0.45
CPSF1-201ENST00000526271 SPRY1O43609 319 aaPredicted RBP12.23□□□□□ -0.45
CPSF1-201ENST00000526271 TPST1O60507 370 aa12.23□□□□□ -0.45
CPSF1-201ENST00000526271 SLC43A1O75387 559 aa12.23□□□□□ -0.45
CPSF1-201ENST00000526271 FAM107AO95990 144 aa12.23□□□□□ -0.45
CPSF1-201ENST00000526271 PATE4P0C8F1 98 aa12.23□□□□□ -0.45
CPSF1-201ENST00000526271 IDO1P14902 403 aa12.23□□□□□ -0.45
CPSF1-201ENST00000526271 ZNF43P17038 809 aa12.23□□□□□ -0.45
CPSF1-201ENST00000526271 ATP4BP51164 291 aa12.23□□□□□ -0.45
CPSF1-201ENST00000526271 DSTNP60981 165 aa12.23□□□□□ -0.45
CPSF1-201ENST00000526271 TXNL4AP83876 142 aaKnown RBP12.23□□□□□ -0.45
CPSF1-201ENST00000526271 PIGFQ07326 219 aa12.23□□□□□ -0.45
CPSF1-201ENST00000526271 PDCD4Q53EL6 469 aaKnown RBP12.23□□□□□ -0.45
CPSF1-201ENST00000526271 TMEM255AQ5JRV8 349 aa12.23□□□□□ -0.45
CPSF1-201ENST00000526271 C12orf54Q6X4T0 127 aa12.23□□□□□ -0.45
CPSF1-201ENST00000526271 WDR88Q6ZMY6 472 aa12.23□□□□□ -0.45
CPSF1-201ENST00000526271 MSRB3Q8IXL7 192 aa12.23□□□□□ -0.45
CPSF1-201ENST00000526271 PAQR4Q8N4S7 273 aaPredicted RBP12.23□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 47.5 ms