RNA–Protein interactions for RNA: ENST00000526025.1

CD44-222, Transcript of CD44 molecule (Indian blood group), human

TSL 2 BASIC

Gene CD44, Length 1,052 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CD44-222	ENST00000526025	HLA-DOB	P13765	273 aa		18.36	■□□□□ 0.53
CD44-222	ENST00000526025	CD79B	P40259	229 aa		18.36	■□□□□ 0.53
CD44-222	ENST00000526025	TSPAN31	Q12999	210 aa		18.36	■□□□□ 0.53
CD44-222	ENST00000526025	P2RY6	Q15077	328 aa		18.36	■□□□□ 0.53
CD44-222	ENST00000526025	ALG10	Q5BKT4	473 aa		18.36	■□□□□ 0.53
CD44-222	ENST00000526025	FBXW9	Q5XUX1	488 aa		18.36	■□□□□ 0.53
CD44-222	ENST00000526025	SLC35D2	Q76EJ3	337 aa		18.36	■□□□□ 0.53
CD44-222	ENST00000526025	KIF18B	Q86Y91	864 aa		18.36	■□□□□ 0.53
CD44-222	ENST00000526025	LRRC75A	Q8NAA5	344 aa		18.36	■□□□□ 0.53
CD44-222	ENST00000526025	LINC00470	Q9BZP3	86 aa		18.36	■□□□□ 0.53
CD44-222	ENST00000526025	SLCO5A1	Q9H2Y9	848 aa		18.36	■□□□□ 0.53
CD44-222	ENST00000526025	NPDC1	Q9NQX5	325 aa	Predicted RBP	18.36	■□□□□ 0.53
CD44-222	ENST00000526025	GALNT8	Q9NY28	637 aa		18.36	■□□□□ 0.53
CD44-222	ENST00000526025	BAHCC1	Q9P281	2608 aa		18.36	■□□□□ 0.53
CD44-222	ENST00000526025	STX18	Q9P2W9	335 aa	Known RBP	18.36	■□□□□ 0.53
CD44-222	ENST00000526025	MGAT4B	Q9UQ53	548 aa		18.36	■□□□□ 0.53
CD44-222	ENST00000526025		U3KQV3	271 aa		18.36	■□□□□ 0.53
CD44-222	ENST00000526025	TRAV27	A0A087WT01	109 aa		18.35	■□□□□ 0.53
CD44-222	ENST00000526025		A0A1W2PRG6	482 aa		18.35	■□□□□ 0.53
CD44-222	ENST00000526025	UNC119B	A6NIH7	251 aa		18.35	■□□□□ 0.53
CD44-222	ENST00000526025	CENPBD1	B2RD01	187 aa		18.35	■□□□□ 0.53
CD44-222	ENST00000526025	E2F6	O75461	281 aa		18.35	■□□□□ 0.53
CD44-222	ENST00000526025	IGFBP2	P18065	325 aa		18.35	■□□□□ 0.53
CD44-222	ENST00000526025	DAP3	P51398	398 aa	Known RBP	18.35	■□□□□ 0.53
CD44-222	ENST00000526025	MEX3D	Q86XN8	651 aa	Known RBP	18.35	■□□□□ 0.53
CD44-222	ENST00000526025	TMEM123	Q8N131	208 aa		18.35	■□□□□ 0.53
CD44-222	ENST00000526025	OR9Q2	Q8NGE9	314 aa		18.35	■□□□□ 0.53
CD44-222	ENST00000526025	OR51A7	Q8NH64	312 aa		18.35	■□□□□ 0.53
CD44-222	ENST00000526025	OR6X1	Q8NH79	312 aa		18.35	■□□□□ 0.53
CD44-222	ENST00000526025	MOSPD2	Q8NHP6	518 aa		18.35	■□□□□ 0.53
CD44-222	ENST00000526025	GIPC3	Q8TF64	312 aa		18.35	■□□□□ 0.53
CD44-222	ENST00000526025	LRR1	Q96L50	414 aa		18.35	■□□□□ 0.53
CD44-222	ENST00000526025	OR2M2	Q96R28	347 aa		18.35	■□□□□ 0.53
CD44-222	ENST00000526025	TNFRSF13C	Q96RJ3	184 aa		18.35	■□□□□ 0.53
CD44-222	ENST00000526025	GPX7	Q96SL4	187 aa	Predicted RBP	18.35	■□□□□ 0.53
CD44-222	ENST00000526025	GPA33	Q99795	319 aa		18.35	■□□□□ 0.53
CD44-222	ENST00000526025	BDH2	Q9BUT1	245 aa		18.35	■□□□□ 0.53
CD44-222	ENST00000526025	OR10A4	Q9H209	315 aa		18.35	■□□□□ 0.53
CD44-222	ENST00000526025	NTN4	Q9HB63	628 aa		18.35	■□□□□ 0.53
CD44-222	ENST00000526025	MCCC2	Q9HCC0	563 aa		18.35	■□□□□ 0.53
CD44-222	ENST00000526025	PRSS44	E7EML9	344 aa		18.34	■□□□□ 0.53
CD44-222	ENST00000526025	SLC43A1	O75387	559 aa		18.34	■□□□□ 0.53
CD44-222	ENST00000526025	NDUFB2	O95178	105 aa		18.34	■□□□□ 0.53
CD44-222	ENST00000526025	ADA	P00813	363 aa		18.34	■□□□□ 0.53
CD44-222	ENST00000526025	POU2F1	P14859	743 aa		18.34	■□□□□ 0.53
CD44-222	ENST00000526025	IFNGR1	P15260	489 aa		18.34	■□□□□ 0.53
CD44-222	ENST00000526025	PSMB1	P20618	241 aa	Known RBP	18.34	■□□□□ 0.53
CD44-222	ENST00000526025	COX5A	P20674	150 aa		18.34	■□□□□ 0.53
CD44-222	ENST00000526025	GSTM3	P21266	225 aa		18.34	■□□□□ 0.53
CD44-222	ENST00000526025	EDNRA	P25101	427 aa		18.34	■□□□□ 0.53
CD44-222	ENST00000526025	SELENOP	P49908	381 aa		18.34	■□□□□ 0.53
CD44-222	ENST00000526025	ARHGDIA	P52565	204 aa		18.34	■□□□□ 0.53
CD44-222	ENST00000526025	LAPTM4A	Q15012	233 aa		18.34	■□□□□ 0.53
CD44-222	ENST00000526025	FAM205BP	Q63HN1	556 aa		18.34	■□□□□ 0.53
CD44-222	ENST00000526025	RPL13AP3	Q6NVV1	102 aa		18.34	■□□□□ 0.53
CD44-222	ENST00000526025	NIPAL3	Q6P499	406 aa		18.34	■□□□□ 0.53
CD44-222	ENST00000526025	SHQ1	Q6PI26	577 aa	Known RBP	18.34	■□□□□ 0.53
CD44-222	ENST00000526025	CD300LD	Q6UXZ3	194 aa		18.34	■□□□□ 0.53
CD44-222	ENST00000526025	ABHD12B	Q7Z5M8	362 aa	Predicted RBP	18.34	■□□□□ 0.53
CD44-222	ENST00000526025	AQP11	Q8NBQ7	271 aa		18.34	■□□□□ 0.53
CD44-222	ENST00000526025	OR10G2	Q8NGC3	310 aa		18.34	■□□□□ 0.53
CD44-222	ENST00000526025	USB1	Q9BQ65	265 aa	Known RBP	18.34	■□□□□ 0.53
CD44-222	ENST00000526025	HDHD5	Q9BXW7	423 aa		18.34	■□□□□ 0.53
CD44-222	ENST00000526025	ENKD1	Q9H0I2	346 aa		18.34	■□□□□ 0.53
CD44-222	ENST00000526025	TXNIP	Q9H3M7	391 aa		18.34	■□□□□ 0.53
CD44-222	ENST00000526025	SLC24A3	Q9HC58	644 aa		18.34	■□□□□ 0.53
CD44-222	ENST00000526025	PRSS50	Q9UI38	385 aa		18.34	■□□□□ 0.53
CD44-222	ENST00000526025	ZNF726	A6NNF4	738 aa		18.33	■□□□□ 0.52
CD44-222	ENST00000526025	PDLIM1	O00151	329 aa		18.33	■□□□□ 0.52
CD44-222	ENST00000526025	BCL10	O95999	233 aa		18.33	■□□□□ 0.52
CD44-222	ENST00000526025	COX10	Q12887	443 aa		18.33	■□□□□ 0.52
CD44-222	ENST00000526025	SMARCD3	Q6STE5	483 aa		18.33	■□□□□ 0.52
CD44-222	ENST00000526025	CLDN22	Q8N7P3	220 aa		18.33	■□□□□ 0.52
CD44-222	ENST00000526025	PYDC1	Q8WXC3	89 aa		18.33	■□□□□ 0.52
CD44-222	ENST00000526025	SLC7A10	Q9NS82	523 aa		18.33	■□□□□ 0.52
CD44-222	ENST00000526025	ASB6	Q9NWX5	421 aa		18.33	■□□□□ 0.52
CD44-222	ENST00000526025	MED29	Q9NX70	200 aa		18.33	■□□□□ 0.52
CD44-222	ENST00000526025	GPR52	Q9Y2T5	361 aa		18.33	■□□□□ 0.52
CD44-222	ENST00000526025	SLC35F4	A4IF30	521 aa		18.32	■□□□□ 0.52
CD44-222	ENST00000526025		H3BNX3	289 aa		18.32	■□□□□ 0.52
CD44-222	ENST00000526025	GAST	P01350	101 aa		18.32	■□□□□ 0.52
CD44-222	ENST00000526025	F13B	P05160	661 aa		18.32	■□□□□ 0.52
CD44-222	ENST00000526025	CD14	P08571	375 aa		18.32	■□□□□ 0.52
CD44-222	ENST00000526025	APEH	P13798	732 aa	Known RBP	18.32	■□□□□ 0.52
CD44-222	ENST00000526025	ZNF26	P17031	533 aa	Predicted RBP	18.32	■□□□□ 0.52
CD44-222	ENST00000526025	IST1	P53990	364 aa		18.32	■□□□□ 0.52
CD44-222	ENST00000526025	PPP1R8	Q12972	351 aa	Known RBP	18.32	■□□□□ 0.52
CD44-222	ENST00000526025	STK11	Q15831	433 aa		18.32	■□□□□ 0.52
CD44-222	ENST00000526025	ACKR1	Q16570	336 aa		18.32	■□□□□ 0.52
CD44-222	ENST00000526025	ARMC4	Q5T2S8	1044 aa		18.32	■□□□□ 0.52
CD44-222	ENST00000526025	TSPO2	Q5TGU0	170 aa		18.32	■□□□□ 0.52
CD44-222	ENST00000526025	STAC2	Q6ZMT1	411 aa		18.32	■□□□□ 0.52
CD44-222	ENST00000526025	ZNF620	Q6ZNG0	422 aa		18.32	■□□□□ 0.52
CD44-222	ENST00000526025	TMEM179B	Q7Z7N9	219 aa		18.32	■□□□□ 0.52
CD44-222	ENST00000526025	C20orf196	Q8IYI0	205 aa		18.32	■□□□□ 0.52
CD44-222	ENST00000526025	OR5K1	Q8NHB7	308 aa		18.32	■□□□□ 0.52
CD44-222	ENST00000526025	FANK1	Q8TC84	345 aa		18.32	■□□□□ 0.52
CD44-222	ENST00000526025	ASB10	Q8WXI3	467 aa		18.32	■□□□□ 0.52
CD44-222	ENST00000526025	DNAJC9	Q8WXX5	260 aa		18.32	■□□□□ 0.52
CD44-222	ENST00000526025	CENPN	Q96H22	339 aa	Predicted RBP	18.32	■□□□□ 0.52

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