RNA–Protein interactions for RNA: ENST00000516665.1

RNU6-539P-201, Transcript of RNA, U6 small nuclear 539, pseudogene, humanhuman

BASIC

Gene RNU6-539P, Length 103 nt, Biotype snRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNU6-539P-201ENST00000516665 TGIF2LXQ8IUE1 241 aa-2.35□□□□□ -2.79
RNU6-539P-201ENST00000516665 LINC00346Q8IVM7 164 aa-2.35□□□□□ -2.79
RNU6-539P-201ENST00000516665 CDKL3Q8IVW4 592 aaPredicted RBP-2.35□□□□□ -2.79
RNU6-539P-201ENST00000516665 ZNF283Q8N7M2 679 aa-2.35□□□□□ -2.79
RNU6-539P-201ENST00000516665 NOXO1Q8NFA2 376 aa-2.35□□□□□ -2.79
RNU6-539P-201ENST00000516665 OR1N2Q8NGR9 330 aa-2.35□□□□□ -2.79
RNU6-539P-201ENST00000516665 SLC2A14Q8TDB8 520 aa-2.35□□□□□ -2.79
RNU6-539P-201ENST00000516665 HEXDCQ8WVB3 486 aa-2.35□□□□□ -2.79
RNU6-539P-201ENST00000516665 TIGD1Q96MW7 591 aa-2.35□□□□□ -2.79
RNU6-539P-201ENST00000516665 TSSK3Q96PN8 268 aa-2.35□□□□□ -2.79
RNU6-539P-201ENST00000516665 ACCSQ96QU6 501 aa-2.35□□□□□ -2.79
RNU6-539P-201ENST00000516665 PREBQ9HCU5 417 aa-2.35□□□□□ -2.79
RNU6-539P-201ENST00000516665 FAM114A2Q9NRY5 505 aa-2.35□□□□□ -2.79
RNU6-539P-201ENST00000516665 CDH7Q9ULB5 785 aa-2.35□□□□□ -2.79
RNU6-539P-201ENST00000516665 ASB3Q9Y575 518 aa-2.35□□□□□ -2.79
RNU6-539P-201ENST00000516665 RYR2Q92736 4967 aa-2.35□□□□□ -2.79
RNU6-539P-201ENST00000516665 AHCTF1Q8WYP5 2266 aa-2.35□□□□□ -2.79
RNU6-539P-201ENST00000516665 ALMS1Q8TCU4 4167 aa-2.35□□□□□ -2.79
RNU6-539P-201ENST00000516665 PKD1L1Q8TDX9 2849 aa-2.36□□□□□ -2.79
RNU6-539P-201ENST00000516665 SHANK3Q9BYB0 1731 aa-2.36□□□□□ -2.79
RNU6-539P-201ENST00000516665 A6NLC8 198 aa-2.36□□□□□ -2.79
RNU6-539P-201ENST00000516665 H3BNH8 94 aa-2.36□□□□□ -2.79
RNU6-539P-201ENST00000516665 NPPAP01160 153 aa-2.36□□□□□ -2.79
RNU6-539P-201ENST00000516665 UBTFL6P0CB48 400 aaPredicted RBP-2.36□□□□□ -2.79
RNU6-539P-201ENST00000516665 CD28P10747 220 aa-2.36□□□□□ -2.79
RNU6-539P-201ENST00000516665 ZNF43P17038 809 aa-2.36□□□□□ -2.79
RNU6-539P-201ENST00000516665 CTRB1P17538 263 aa-2.36□□□□□ -2.79
RNU6-539P-201ENST00000516665 CASP14P31944 242 aa-2.36□□□□□ -2.79
RNU6-539P-201ENST00000516665 ARL6IP1Q15041 203 aa-2.36□□□□□ -2.79
RNU6-539P-201ENST00000516665 CYTH1Q15438 398 aa-2.36□□□□□ -2.79
RNU6-539P-201ENST00000516665 SURF2Q15527 256 aaPredicted RBP-2.36□□□□□ -2.79
RNU6-539P-201ENST00000516665 PHYHD1Q5SRE7 291 aa-2.36□□□□□ -2.79
RNU6-539P-201ENST00000516665 RTL6Q6ICC9 239 aa-2.36□□□□□ -2.79
RNU6-539P-201ENST00000516665 SLC25A25Q6KCM7 469 aa-2.36□□□□□ -2.79
RNU6-539P-201ENST00000516665 CBLN3Q6UW01 205 aa-2.36□□□□□ -2.79
RNU6-539P-201ENST00000516665 ZNF571Q7Z3V5 609 aaPredicted RBP-2.36□□□□□ -2.79
RNU6-539P-201ENST00000516665 PLA2G4DQ86XP0 818 aa-2.36□□□□□ -2.79
RNU6-539P-201ENST00000516665 TCAIMQ8N3R3 496 aa-2.36□□□□□ -2.79
RNU6-539P-201ENST00000516665 C15orf53Q8NAA6 179 aa-2.36□□□□□ -2.79
RNU6-539P-201ENST00000516665 C1orf131Q8NDD1 294 aaKnown RBP-2.36□□□□□ -2.79
RNU6-539P-201ENST00000516665 RNF133Q8WVZ7 376 aa-2.36□□□□□ -2.79
RNU6-539P-201ENST00000516665 RMDN1Q96DB5 314 aa-2.36□□□□□ -2.79
RNU6-539P-201ENST00000516665 MRPL53Q96EL3 112 aaKnown RBP-2.36□□□□□ -2.79
RNU6-539P-201ENST00000516665 RUFY1Q96T51 708 aa-2.36□□□□□ -2.79
RNU6-539P-201ENST00000516665 KATNB1Q9BVA0 655 aa-2.36□□□□□ -2.79
RNU6-539P-201ENST00000516665 FGF23Q9GZV9 251 aaPredicted RBP-2.36□□□□□ -2.79
RNU6-539P-201ENST00000516665 ALDH8A1Q9H2A2 487 aaPredicted RBP-2.36□□□□□ -2.79
RNU6-539P-201ENST00000516665 SAV1Q9H4B6 383 aaPredicted RBP-2.36□□□□□ -2.79
RNU6-539P-201ENST00000516665 CSNK1G1Q9HCP0 422 aa-2.36□□□□□ -2.79
RNU6-539P-201ENST00000516665 BABAM2Q9NXR7 383 aa-2.36□□□□□ -2.79
RNU6-539P-201ENST00000516665 MIS18AQ9NYP9 233 aa-2.36□□□□□ -2.79
RNU6-539P-201ENST00000516665 RRN3Q9NYV6 651 aa-2.36□□□□□ -2.79
RNU6-539P-201ENST00000516665 MTRRQ9UBK8 725 aa-2.36□□□□□ -2.79
RNU6-539P-201ENST00000516665 RTEL1-TNFRSF6BF6WH68 1400 aa-2.36□□□□□ -2.79
RNU6-539P-201ENST00000516665 DOCK3Q8IZD9 2030 aa-2.37□□□□□ -2.79
RNU6-539P-201ENST00000516665 FNDC10F2Z333 226 aa-2.37□□□□□ -2.79
RNU6-539P-201ENST00000516665 ZNF208O43345 1280 aa-2.37□□□□□ -2.79
RNU6-539P-201ENST00000516665 JAK2O60674 1132 aa-2.37□□□□□ -2.79
RNU6-539P-201ENST00000516665 TRIM3O75382 744 aaPredicted RBP-2.37□□□□□ -2.79
RNU6-539P-201ENST00000516665 CRTAPO75718 401 aaPredicted RBP-2.37□□□□□ -2.79
RNU6-539P-201ENST00000516665 IFIT2P09913 472 aaKnown RBP-2.37□□□□□ -2.79
RNU6-539P-201ENST00000516665 MAPK3P27361 379 aaPredicted RBP-2.37□□□□□ -2.79
RNU6-539P-201ENST00000516665 IL12BP29460 328 aa-2.37□□□□□ -2.79
RNU6-539P-201ENST00000516665 RFC2P35250 354 aa-2.37□□□□□ -2.79
RNU6-539P-201ENST00000516665 COILP38432 576 aaPredicted RBP-2.37□□□□□ -2.79
RNU6-539P-201ENST00000516665 PSMC6P62333 389 aa-2.37□□□□□ -2.79
RNU6-539P-201ENST00000516665 CUL2Q13617 745 aa-2.37□□□□□ -2.79
RNU6-539P-201ENST00000516665 UBE2V2Q15819 145 aa-2.37□□□□□ -2.79
RNU6-539P-201ENST00000516665 ZBED5Q49AG3 693 aa-2.37□□□□□ -2.79
RNU6-539P-201ENST00000516665 CDC42EP5Q6NZY7 148 aa-2.37□□□□□ -2.79
RNU6-539P-201ENST00000516665 C10orf99Q6UWK7 81 aa-2.37□□□□□ -2.79
RNU6-539P-201ENST00000516665 NLRP9Q7RTR0 991 aa-2.37□□□□□ -2.79
RNU6-539P-201ENST00000516665 SCXQ7RTU7 201 aa-2.37□□□□□ -2.79
RNU6-539P-201ENST00000516665 PAGE2Q7Z2X7 111 aa-2.37□□□□□ -2.79
RNU6-539P-201ENST00000516665 ANKRD46Q86W74 232 aa-2.37□□□□□ -2.79
RNU6-539P-201ENST00000516665 GTPBP8Q8N3Z3 284 aaPredicted RBP-2.37□□□□□ -2.79
RNU6-539P-201ENST00000516665 MRPL43Q8N983 215 aaKnown RBP-2.37□□□□□ -2.79
RNU6-539P-201ENST00000516665 OR4D9Q8NGE8 314 aa-2.37□□□□□ -2.79
RNU6-539P-201ENST00000516665 OR6M1Q8NGM8 313 aa-2.37□□□□□ -2.79
RNU6-539P-201ENST00000516665 OR56B4Q8NH76 319 aa-2.37□□□□□ -2.79
RNU6-539P-201ENST00000516665 SPACA4Q8TDM5 124 aa-2.37□□□□□ -2.79
RNU6-539P-201ENST00000516665 CCT6BQ92526 530 aa-2.37□□□□□ -2.79
RNU6-539P-201ENST00000516665 EXT2Q93063 718 aa-2.37□□□□□ -2.79
RNU6-539P-201ENST00000516665 MR1Q95460 341 aa-2.37□□□□□ -2.79
RNU6-539P-201ENST00000516665 RAD51AP1Q96B01 352 aa-2.37□□□□□ -2.79
RNU6-539P-201ENST00000516665 ITCHQ96J02 903 aa-2.37□□□□□ -2.79
RNU6-539P-201ENST00000516665 SMARCAD1Q9H4L7 1026 aa-2.37□□□□□ -2.79
RNU6-539P-201ENST00000516665 GPR173Q9NS66 373 aa-2.37□□□□□ -2.79
RNU6-539P-201ENST00000516665 TREX1Q9NSU2 369 aa-2.37□□□□□ -2.79
RNU6-539P-201ENST00000516665 KIAA1257Q9ULG3 409 aa-2.37□□□□□ -2.79
RNU6-539P-201ENST00000516665 FLNBO75369 2602 aaKnown RBP-2.38□□□□□ -2.79
RNU6-539P-201ENST00000516665 HUWE1Q7Z6Z7 4374 aaKnown RBP-2.38□□□□□ -2.79
RNU6-539P-201ENST00000516665 IGHV3-49A0A0A0MS15 119 aa-2.38□□□□□ -2.79
RNU6-539P-201ENST00000516665 IGHV7-4-1A0A0J9YVY3 117 aa-2.38□□□□□ -2.79
RNU6-539P-201ENST00000516665 HSFX4A0A1B0GTS1 333 aaPredicted RBP-2.38□□□□□ -2.79
RNU6-539P-201ENST00000516665 HSFX3A0A1B0GWH4 333 aaPredicted RBP-2.38□□□□□ -2.79
RNU6-539P-201ENST00000516665 FCN1O00602 326 aa-2.38□□□□□ -2.79
RNU6-539P-201ENST00000516665 SH3BP5O60239 455 aa-2.38□□□□□ -2.79
RNU6-539P-201ENST00000516665 MRPS14O60783 128 aaKnown RBP-2.38□□□□□ -2.79
RNU6-539P-201ENST00000516665 CD8AP01732 235 aa-2.38□□□□□ -2.79
Retrieved 100 of 20,778 RNA–protein pairs in 25.5 ms