RNA–Protein interactions for RNA: ENST00000514665.1

USP53-209, Transcript of ubiquitin specific peptidase 53, humanhuman

TSL 1 (best)

Gene USP53, Length 4,233 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-209ENST00000514665 OR6F1Q8NGZ6 308 aa11.68□□□□□ -0.54
USP53-209ENST00000514665 SLC6A18Q96N87 628 aa11.68□□□□□ -0.54
USP53-209ENST00000514665 SEMA6CQ9H3T2 930 aa11.68□□□□□ -0.54
USP53-209ENST00000514665 WDR76Q9H967 626 aa11.68□□□□□ -0.54
USP53-209ENST00000514665 WASF3Q9UPY6 502 aa11.68□□□□□ -0.54
USP53-209ENST00000514665 MOKQ9UQ07 419 aa11.68□□□□□ -0.54
USP53-209ENST00000514665 SLC22A7Q9Y694 548 aa11.68□□□□□ -0.54
USP53-209ENST00000514665 TMED7-TICAM2A0A0A6YYA0 188 aa11.68□□□□□ -0.54
USP53-209ENST00000514665 A0A0B4J203 849 aa11.68□□□□□ -0.54
USP53-209ENST00000514665 EFCAB7A8K855 629 aa11.68□□□□□ -0.54
USP53-209ENST00000514665 IGHG1P01857 330 aa11.68□□□□□ -0.54
USP53-209ENST00000514665 ST6GAL1P15907 406 aa11.68□□□□□ -0.54
USP53-209ENST00000514665 HIST1H1CP16403 213 aaKnown RBP11.68□□□□□ -0.54
USP53-209ENST00000514665 EEF1A2Q05639 463 aaKnown RBP11.68□□□□□ -0.54
USP53-209ENST00000514665 HTR4Q13639 388 aa11.68□□□□□ -0.54
USP53-209ENST00000514665 ALKBH1Q13686 389 aaKnown RBP11.68□□□□□ -0.54
USP53-209ENST00000514665 BAK1Q16611 211 aa11.68□□□□□ -0.54
USP53-209ENST00000514665 C9orf135Q5VTT2 229 aa11.68□□□□□ -0.54
USP53-209ENST00000514665 MARCH3Q86UD3 253 aa11.68□□□□□ -0.54
USP53-209ENST00000514665 SLC2A12Q8TD20 617 aa11.68□□□□□ -0.54
USP53-209ENST00000514665 ASB17Q8WXJ9 295 aa11.68□□□□□ -0.54
USP53-209ENST00000514665 TMED7Q9Y3B3 224 aa11.68□□□□□ -0.54
USP53-209ENST00000514665 TNFSF12-TNFSF13A0A0A6YY99 330 aa11.67□□□□□ -0.54
USP53-209ENST00000514665 TNFSF12O43508 249 aa11.67□□□□□ -0.54
USP53-209ENST00000514665 FBXO24O75426 580 aa11.67□□□□□ -0.54
USP53-209ENST00000514665 SLC2A1P11166 492 aa11.67□□□□□ -0.54
USP53-209ENST00000514665 CXCL12P48061 93 aa11.67□□□□□ -0.54
USP53-209ENST00000514665 CLDN6P56747 220 aa11.67□□□□□ -0.54
USP53-209ENST00000514665 DCAF7P61962 342 aa11.67□□□□□ -0.54
USP53-209ENST00000514665 FAM160A2Q8N612 972 aaPredicted RBP11.67□□□□□ -0.54
USP53-209ENST00000514665 FNDC9Q8TBE3 224 aa11.67□□□□□ -0.54
USP53-209ENST00000514665 VN1R3Q9BXE9 311 aa11.67□□□□□ -0.54
USP53-209ENST00000514665 ULBP2Q9BZM5 246 aa11.67□□□□□ -0.54
USP53-209ENST00000514665 IGHV3-20A0A0C4DH32 117 aa11.67□□□□□ -0.54
USP53-209ENST00000514665 P2RY10O00398 339 aa11.67□□□□□ -0.54
USP53-209ENST00000514665 BRINP1O60477 761 aa11.67□□□□□ -0.54
USP53-209ENST00000514665 TP53P04637 393 aaPredicted RBP11.67□□□□□ -0.54
USP53-209ENST00000514665 HBQ1P09105 142 aa11.67□□□□□ -0.54
USP53-209ENST00000514665 ZNF28P17035 718 aa11.67□□□□□ -0.54
USP53-209ENST00000514665 NFYAP23511 347 aaPredicted RBP11.67□□□□□ -0.54
USP53-209ENST00000514665 OR10A3P58181 314 aa11.67□□□□□ -0.54
USP53-209ENST00000514665 MCCD1P59942 119 aaPredicted RBP11.67□□□□□ -0.54
USP53-209ENST00000514665 PPP2CBP62714 309 aa11.67□□□□□ -0.54
USP53-209ENST00000514665 PPP2CAP67775 309 aa11.67□□□□□ -0.54
USP53-209ENST00000514665 DGCR2P98153 550 aa11.67□□□□□ -0.54
USP53-209ENST00000514665 MRPL49Q13405 166 aaKnown RBP11.67□□□□□ -0.54
USP53-209ENST00000514665 GALEQ14376 348 aa11.67□□□□□ -0.54
USP53-209ENST00000514665 PAPD4Q6PIY7 484 aaKnown RBP11.67□□□□□ -0.54
USP53-209ENST00000514665 GPR155Q7Z3F1 870 aa11.67□□□□□ -0.54
USP53-209ENST00000514665 FOXRED1Q96CU9 486 aaPredicted RBP11.67□□□□□ -0.54
USP53-209ENST00000514665 ORAI1Q96D31 301 aa11.67□□□□□ -0.54
USP53-209ENST00000514665 DDOQ99489 341 aa11.67□□□□□ -0.54
USP53-209ENST00000514665 MICU1Q9BPX6 476 aa11.67□□□□□ -0.54
USP53-209ENST00000514665 HINT2Q9BX68 163 aa11.67□□□□□ -0.54
USP53-209ENST00000514665 SLIRPQ9GZT3 109 aaKnown RBP11.67□□□□□ -0.54
USP53-209ENST00000514665 NIPAL2Q9H841 368 aa11.67□□□□□ -0.54
USP53-209ENST00000514665 CMC2Q9NRP2 79 aa11.67□□□□□ -0.54
USP53-209ENST00000514665 EHFQ9NZC4 300 aa11.67□□□□□ -0.54
USP53-209ENST00000514665 CGGBP1Q9UFW8 167 aaPredicted RBP11.67□□□□□ -0.54
USP53-209ENST00000514665 KCNE3Q9Y6H6 103 aa11.67□□□□□ -0.54
USP53-209ENST00000514665 CCDC163A0A0D9SF12 145 aa11.67□□□□□ -0.54
USP53-209ENST00000514665 FITM1A5D6W6 292 aa11.67□□□□□ -0.54
USP53-209ENST00000514665 HRO43593 1189 aa11.67□□□□□ -0.54
USP53-209ENST00000514665 CXCL10P02778 98 aa11.67□□□□□ -0.54
USP53-209ENST00000514665 CD79AP11912 226 aa11.67□□□□□ -0.54
USP53-209ENST00000514665 BDKRB2P30411 391 aa11.67□□□□□ -0.54
USP53-209ENST00000514665 IHHQ14623 411 aa11.67□□□□□ -0.54
USP53-209ENST00000514665 TMEM240Q5SV17 173 aa11.67□□□□□ -0.54
USP53-209ENST00000514665 ABHD17BQ5VST6 288 aa11.67□□□□□ -0.54
USP53-209ENST00000514665 TRAPPC6BQ86SZ2 158 aa11.67□□□□□ -0.54
USP53-209ENST00000514665 RDH10Q8IZV5 341 aa11.67□□□□□ -0.54
USP53-209ENST00000514665 LRRC18Q8N456 261 aa11.67□□□□□ -0.54
USP53-209ENST00000514665 PLA2G12AQ9BZM1 189 aa11.67□□□□□ -0.54
USP53-209ENST00000514665 C6orf106Q9H6K1 298 aaPredicted RBP11.67□□□□□ -0.54
USP53-209ENST00000514665 BCL2L10Q9HD36 194 aa11.67□□□□□ -0.54
USP53-209ENST00000514665 TRPM6Q9BX84 2022 aa11.66□□□□□ -0.54
USP53-209ENST00000514665 TSPAN11A1L157 253 aa11.66□□□□□ -0.54
USP53-209ENST00000514665 M0R082 166 aa11.66□□□□□ -0.54
USP53-209ENST00000514665 CPEP16870 476 aa11.66□□□□□ -0.54
USP53-209ENST00000514665 HTR3AP46098 478 aa11.66□□□□□ -0.54
USP53-209ENST00000514665 BIDP55957 195 aa11.66□□□□□ -0.54
USP53-209ENST00000514665 GLYR1Q49A26 553 aaPredicted RBP11.66□□□□□ -0.54
USP53-209ENST00000514665 STEAP1BQ6NZ63 245 aa11.66□□□□□ -0.54
USP53-209ENST00000514665 PPP1R3BQ86XI6 285 aa11.66□□□□□ -0.54
USP53-209ENST00000514665 ALG14Q96F25 216 aa11.66□□□□□ -0.54
USP53-209ENST00000514665 C1orf198Q9H425 327 aa11.66□□□□□ -0.54
USP53-209ENST00000514665 B4DXG7 233 aa11.66□□□□□ -0.54
USP53-209ENST00000514665 GLCEO94923 617 aa11.66□□□□□ -0.54
USP53-209ENST00000514665 EPHA1P21709 976 aa11.66□□□□□ -0.54
USP53-209ENST00000514665 PRKACBP22694 351 aa11.66□□□□□ -0.54
USP53-209ENST00000514665 PRPH2P23942 346 aa11.66□□□□□ -0.54
USP53-209ENST00000514665 CCR9P51686 369 aa11.66□□□□□ -0.54
USP53-209ENST00000514665 KIAA1024LP59773 190 aa11.66□□□□□ -0.54
USP53-209ENST00000514665 ASAH1Q13510 395 aa11.66□□□□□ -0.54
USP53-209ENST00000514665 GLYATL2Q8WU03 294 aa11.66□□□□□ -0.54
USP53-209ENST00000514665 SLC46A1Q96NT5 459 aa11.66□□□□□ -0.54
USP53-209ENST00000514665 HRH4Q9H3N8 390 aa11.66□□□□□ -0.54
USP53-209ENST00000514665 NPAP1Q9NZP6 1156 aa11.66□□□□□ -0.54
USP53-209ENST00000514665 ADAMTSL1Q8N6G6 1762 aa11.66□□□□□ -0.54
USP53-209ENST00000514665 TRAV36DV7A0A075B6V5 113 aa11.66□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 29.6 ms