RNA–Protein interactions for RNA: ENST00000511496.5

LIMCH1-213, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 3,439 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-213ENST00000511496 CBLN4Q9NTU7 201 aa11.05□□□□□ -0.64
LIMCH1-213ENST00000511496 AMDHD2Q9Y303 409 aa11.05□□□□□ -0.64
LIMCH1-213ENST00000511496 TCF21O43680 179 aa11.05□□□□□ -0.64
LIMCH1-213ENST00000511496 GPR37L1O60883 481 aa11.05□□□□□ -0.64
LIMCH1-213ENST00000511496 ALOX12BO75342 701 aa11.05□□□□□ -0.64
LIMCH1-213ENST00000511496 AFF3P51826 1226 aaKnown RBP11.05□□□□□ -0.64
LIMCH1-213ENST00000511496 SLC10A1Q14973 349 aa11.05□□□□□ -0.64
LIMCH1-213ENST00000511496 GGNBP1Q5YKI7 109 aa11.05□□□□□ -0.64
LIMCH1-213ENST00000511496 CERS6Q6ZMG9 384 aa11.05□□□□□ -0.64
LIMCH1-213ENST00000511496 MORN4Q8NDC4 146 aa11.05□□□□□ -0.64
LIMCH1-213ENST00000511496 OR4K17Q8NGC6 315 aa11.05□□□□□ -0.64
LIMCH1-213ENST00000511496 CASTOR1Q8WTX7 329 aa11.05□□□□□ -0.64
LIMCH1-213ENST00000511496 UBTD2Q8WUN7 234 aa11.05□□□□□ -0.64
LIMCH1-213ENST00000511496 PGLYRP3Q96LB9 341 aa11.05□□□□□ -0.64
LIMCH1-213ENST00000511496 SLC6A16Q9GZN6 736 aa11.05□□□□□ -0.64
LIMCH1-213ENST00000511496 TUBA4BQ9H853 241 aa11.05□□□□□ -0.64
LIMCH1-213ENST00000511496 MRPS23Q9Y3D9 190 aaKnown RBP11.05□□□□□ -0.64
LIMCH1-213ENST00000511496 C5orf51A6NDU8 294 aa11.05□□□□□ -0.64
LIMCH1-213ENST00000511496 ANKRD66B4E2M5 251 aa11.05□□□□□ -0.64
LIMCH1-213ENST00000511496 NPC1O15118 1278 aa11.05□□□□□ -0.64
LIMCH1-213ENST00000511496 LRP3O75074 770 aa11.05□□□□□ -0.64
LIMCH1-213ENST00000511496 CD8AP01732 235 aa11.05□□□□□ -0.64
LIMCH1-213ENST00000511496 SLC25A4P12235 298 aa11.05□□□□□ -0.64
LIMCH1-213ENST00000511496 EPCAMP16422 314 aa11.05□□□□□ -0.64
LIMCH1-213ENST00000511496 SERINC3Q13530 473 aa11.05□□□□□ -0.64
LIMCH1-213ENST00000511496 MS4A13Q5J8X5 152 aa11.05□□□□□ -0.64
LIMCH1-213ENST00000511496 PIP5KL1Q5T9C9 394 aa11.05□□□□□ -0.64
LIMCH1-213ENST00000511496 ATPAF1Q5TC12 328 aaPredicted RBP11.05□□□□□ -0.64
LIMCH1-213ENST00000511496 OR2T2Q6IF00 324 aa11.05□□□□□ -0.64
LIMCH1-213ENST00000511496 SCN4BQ8IWT1 228 aa11.05□□□□□ -0.64
LIMCH1-213ENST00000511496 EID2Q8N6I1 236 aa11.05□□□□□ -0.64
LIMCH1-213ENST00000511496 PCSK9Q8NBP7 692 aaKnown RBP11.05□□□□□ -0.64
LIMCH1-213ENST00000511496 R3HDM4Q96D70 268 aa11.05□□□□□ -0.64
LIMCH1-213ENST00000511496 EIF5A2Q9GZV4 153 aaKnown RBP11.05□□□□□ -0.64
LIMCH1-213ENST00000511496 UBR3Q6ZT12 1888 aa11.04□□□□□ -0.64
LIMCH1-213ENST00000511496 GXYLT2A0PJZ3 443 aa11.04□□□□□ -0.64
LIMCH1-213ENST00000511496 M0R143 59 aa11.04□□□□□ -0.64
LIMCH1-213ENST00000511496 GLCEO94923 617 aa11.04□□□□□ -0.64
LIMCH1-213ENST00000511496 HLA-AP01891 365 aaKnown RBP11.04□□□□□ -0.64
LIMCH1-213ENST00000511496 CD5P06127 495 aa11.04□□□□□ -0.64
LIMCH1-213ENST00000511496 DCNP07585 359 aaKnown RBP11.04□□□□□ -0.64
LIMCH1-213ENST00000511496 CD14P08571 375 aa11.04□□□□□ -0.64
LIMCH1-213ENST00000511496 ALPPL2P10696 532 aa11.04□□□□□ -0.64
LIMCH1-213ENST00000511496 TAS2R41P59536 307 aa11.04□□□□□ -0.64
LIMCH1-213ENST00000511496 MRPS11P82912 194 aaKnown RBP11.04□□□□□ -0.64
LIMCH1-213ENST00000511496 BEX3Q00994 111 aa11.04□□□□□ -0.64
LIMCH1-213ENST00000511496 INSM1Q01101 510 aaPredicted RBP11.04□□□□□ -0.64
LIMCH1-213ENST00000511496 RASGEF1BQ0VAM2 473 aa11.04□□□□□ -0.64
LIMCH1-213ENST00000511496 SYPL1Q16563 259 aa11.04□□□□□ -0.64
LIMCH1-213ENST00000511496 ISXQ2M1V0 245 aa11.04□□□□□ -0.64
LIMCH1-213ENST00000511496 HENMT1Q5T8I9 393 aaKnown RBP11.04□□□□□ -0.64
LIMCH1-213ENST00000511496 HIST2H3PS2Q5TEC6 136 aa11.04□□□□□ -0.64
LIMCH1-213ENST00000511496 GDF6Q6KF10 455 aaPredicted RBP11.04□□□□□ -0.64
LIMCH1-213ENST00000511496 FBXL22Q6P050 247 aa11.04□□□□□ -0.64
LIMCH1-213ENST00000511496 CD300LDQ6UXZ3 194 aa11.04□□□□□ -0.64
LIMCH1-213ENST00000511496 ZNF836Q6ZNA1 936 aa11.04□□□□□ -0.64
LIMCH1-213ENST00000511496 FAM219AQ8IW50 185 aa11.04□□□□□ -0.64
LIMCH1-213ENST00000511496 KLK6Q92876 244 aa11.04□□□□□ -0.64
LIMCH1-213ENST00000511496 MALSU1Q96EH3 234 aa11.04□□□□□ -0.64
LIMCH1-213ENST00000511496 SAMD8Q96LT4 415 aa11.04□□□□□ -0.64
LIMCH1-213ENST00000511496 HCAR1Q9BXC0 346 aa11.04□□□□□ -0.64
LIMCH1-213ENST00000511496 TCEAL2Q9H3H9 227 aaPredicted RBP11.04□□□□□ -0.64
LIMCH1-213ENST00000511496 NOX4Q9NPH5 578 aa11.04□□□□□ -0.64
LIMCH1-213ENST00000511496 ADAM18Q9Y3Q7 739 aa11.04□□□□□ -0.64
LIMCH1-213ENST00000511496 PUS1Q9Y606 427 aaKnown RBP eCLIP11.04□□□□□ -0.64
LIMCH1-213ENST00000511496 DUXAA6NLW8 204 aa11.04□□□□□ -0.64
LIMCH1-213ENST00000511496 HIST1H2BKO60814 126 aa11.04□□□□□ -0.64
LIMCH1-213ENST00000511496 PMS2P2O95744 297 aa11.04□□□□□ -0.64
LIMCH1-213ENST00000511496 TBX6O95947 436 aaPredicted RBP11.04□□□□□ -0.64
LIMCH1-213ENST00000511496 HIST1H2BJP06899 126 aa11.04□□□□□ -0.64
LIMCH1-213ENST00000511496 OR8U9P0C7N5 309 aa11.04□□□□□ -0.64
LIMCH1-213ENST00000511496 FGF7P21781 194 aa11.04□□□□□ -0.64
LIMCH1-213ENST00000511496 HIST1H2BOP23527 126 aa11.04□□□□□ -0.64
LIMCH1-213ENST00000511496 HIST1H2BBP33778 126 aa11.04□□□□□ -0.64
LIMCH1-213ENST00000511496 DVL1P1P54792 670 aaPredicted RBP11.04□□□□□ -0.64
LIMCH1-213ENST00000511496 HIST1H2BDP58876 126 aa11.04□□□□□ -0.64
LIMCH1-213ENST00000511496 RPS13P62277 151 aaKnown RBP11.04□□□□□ -0.64
LIMCH1-213ENST00000511496 HIST1H2BCP62807 126 aa11.04□□□□□ -0.64
LIMCH1-213ENST00000511496 HIST2H2BEQ16778 126 aa11.04□□□□□ -0.64
LIMCH1-213ENST00000511496 DCAF4L1Q3SXM0 396 aa11.04□□□□□ -0.64
LIMCH1-213ENST00000511496 VWA2Q5GFL6 755 aa11.04□□□□□ -0.64
LIMCH1-213ENST00000511496 ZNF311Q5JNZ3 666 aa11.04□□□□□ -0.64
LIMCH1-213ENST00000511496 HIST2H2BFQ5QNW6 126 aaPredicted RBP11.04□□□□□ -0.64
LIMCH1-213ENST00000511496 ARTNQ5T4W7 220 aa11.04□□□□□ -0.64
LIMCH1-213ENST00000511496 LRRC70Q7Z2Q7 622 aa11.04□□□□□ -0.64
LIMCH1-213ENST00000511496 SLC35F3Q8IY50 421 aa11.04□□□□□ -0.64
LIMCH1-213ENST00000511496 TOP6BLQ8N6T0 577 aa11.04□□□□□ -0.64
LIMCH1-213ENST00000511496 SLC30A7Q8NEW0 376 aa11.04□□□□□ -0.64
LIMCH1-213ENST00000511496 OR8U1Q8NH10 309 aa11.04□□□□□ -0.64
LIMCH1-213ENST00000511496 SLC25A43Q8WUT9 341 aaPredicted RBP11.04□□□□□ -0.64
LIMCH1-213ENST00000511496 HIST1H2BHQ93079 126 aa11.04□□□□□ -0.64
LIMCH1-213ENST00000511496 ZBTB8AQ96BR9 441 aa11.04□□□□□ -0.64
LIMCH1-213ENST00000511496 DTD2Q96FN9 168 aa11.04□□□□□ -0.64
LIMCH1-213ENST00000511496 WDR92Q96MX6 357 aa11.04□□□□□ -0.64
LIMCH1-213ENST00000511496 HIST1H2BNQ99877 126 aa11.04□□□□□ -0.64
LIMCH1-213ENST00000511496 HIST1H2BMQ99879 126 aa11.04□□□□□ -0.64
LIMCH1-213ENST00000511496 ADAM2Q99965 735 aa11.04□□□□□ -0.64
LIMCH1-213ENST00000511496 BHLHE41Q9C0J9 482 aaPredicted RBP11.04□□□□□ -0.64
LIMCH1-213ENST00000511496 CSAG2Q9Y5P2 127 aa11.04□□□□□ -0.64
LIMCH1-213ENST00000511496 DOCK1Q14185 1865 aa11.03□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 48.4 ms