RNA–Protein interactions for RNA: ENST00000494090.6

COL27A1-207, Transcript of collagen type XXVII alpha 1 chain, humanhuman

TSL 1 (best)

Gene COL27A1, Length 5,329 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL27A1-207ENST00000494090 PLPP1O14494 284 aa17.7■□□□□ 0.42
COL27A1-207ENST00000494090 MC2RQ01718 297 aa17.7■□□□□ 0.42
COL27A1-207ENST00000494090 KCNG3Q8TAE7 436 aa17.7■□□□□ 0.42
COL27A1-207ENST00000494090 NOX4Q9NPH5 578 aa17.7■□□□□ 0.42
COL27A1-207ENST00000494090 TRIM23P36406 574 aa17.69■□□□□ 0.42
COL27A1-207ENST00000494090 HTRA3P83110 453 aa17.69■□□□□ 0.42
COL27A1-207ENST00000494090 NMNAT3Q96T66 252 aa17.69■□□□□ 0.42
COL27A1-207ENST00000494090 C11orf54Q9H0W9 315 aaPredicted RBP17.69■□□□□ 0.42
COL27A1-207ENST00000494090 GAREM1Q9H706 876 aa17.69■□□□□ 0.42
COL27A1-207ENST00000494090 RRP8O43159 456 aaKnown RBP17.69■□□□□ 0.42
COL27A1-207ENST00000494090 KLK8O60259 260 aa17.69■□□□□ 0.42
COL27A1-207ENST00000494090 PTBP1P26599 531 aaKnown RBP eCLIP17.69■□□□□ 0.421e-8■■■□□ 15.5
COL27A1-207ENST00000494090 MTCP1P56278 107 aa17.69■□□□□ 0.42
COL27A1-207ENST00000494090 CLDN6P56747 220 aa17.69■□□□□ 0.42
COL27A1-207ENST00000494090 SRPXP78539 464 aa17.69■□□□□ 0.42
COL27A1-207ENST00000494090 TNK1Q13470 666 aa17.69■□□□□ 0.42
COL27A1-207ENST00000494090 GAB1Q13480 694 aa17.69■□□□□ 0.42
COL27A1-207ENST00000494090 TRIM61Q5EBN2 209 aa17.69■□□□□ 0.42
COL27A1-207ENST00000494090 RTN4RL1Q86UN2 441 aaPredicted RBP17.69■□□□□ 0.42
COL27A1-207ENST00000494090 ELSPBP1Q96BH3 223 aa17.69■□□□□ 0.42
COL27A1-207ENST00000494090 NUDT22Q9BRQ3 303 aa17.69■□□□□ 0.42
COL27A1-207ENST00000494090 LYRM4Q9HD34 91 aa17.69■□□□□ 0.42
COL27A1-207ENST00000494090 ZNF814B7Z6K7 855 aa17.69■□□□□ 0.42
COL27A1-207ENST00000494090 MMP11P24347 488 aa17.69■□□□□ 0.42
COL27A1-207ENST00000494090 HTR2CP28335 458 aa17.69■□□□□ 0.42
COL27A1-207ENST00000494090 SLC35A2P78381 396 aa17.69■□□□□ 0.42
COL27A1-207ENST00000494090 BCDIN3DQ7Z5W3 292 aaKnown RBP17.69■□□□□ 0.42
COL27A1-207ENST00000494090 NANOGP1Q8N7R0 232 aa17.69■□□□□ 0.42
COL27A1-207ENST00000494090 NMNAT2Q9BZQ4 307 aa17.69■□□□□ 0.42
COL27A1-207ENST00000494090 LRP5O75197 1615 aa17.69■□□□□ 0.42
COL27A1-207ENST00000494090 NPSR1Q6W5P4 371 aa17.69■□□□□ 0.42
COL27A1-207ENST00000494090 CELF2-AS1Q8N7Q2 184 aa17.69■□□□□ 0.42
COL27A1-207ENST00000494090 SLC25A43Q8WUT9 341 aaPredicted RBP17.69■□□□□ 0.42
COL27A1-207ENST00000494090 UBL7Q96S82 380 aaPredicted RBP17.69■□□□□ 0.42
COL27A1-207ENST00000494090 LYSMD1Q96S90 227 aa17.69■□□□□ 0.42
COL27A1-207ENST00000494090 NKX3-1Q99801 234 aaPredicted RBP17.69■□□□□ 0.42
COL27A1-207ENST00000494090 OCSTAMPQ9BR26 566 aa17.69■□□□□ 0.42
COL27A1-207ENST00000494090 TWSG1Q9GZX9 223 aa17.69■□□□□ 0.42
COL27A1-207ENST00000494090 ETV7Q9Y603 341 aa17.69■□□□□ 0.42
COL27A1-207ENST00000494090 TIMM8AO60220 97 aaPredicted RBP17.68■□□□□ 0.42
COL27A1-207ENST00000494090 PPP3CBP16298 524 aa17.68■□□□□ 0.42
COL27A1-207ENST00000494090 SORDQ00796 357 aa17.68■□□□□ 0.42
COL27A1-207ENST00000494090 PEA15Q15121 130 aa17.68■□□□□ 0.42
COL27A1-207ENST00000494090 TMEM59Q9BXS4 323 aa17.68■□□□□ 0.42
COL27A1-207ENST00000494090 SH3BGRL2Q9UJC5 107 aa17.68■□□□□ 0.42
COL27A1-207ENST00000494090 TRHRP34981 398 aaPredicted RBP17.68■□□□□ 0.42
COL27A1-207ENST00000494090 CARD18P57730 90 aa17.68■□□□□ 0.42
COL27A1-207ENST00000494090 YIF1BQ5BJH7 314 aa17.68■□□□□ 0.42
COL27A1-207ENST00000494090 SAXO2Q658L1 398 aa17.68■□□□□ 0.42
COL27A1-207ENST00000494090 CD300LGQ6UXG3 332 aa17.68■□□□□ 0.42
COL27A1-207ENST00000494090 ZNF836Q6ZNA1 936 aa17.68■□□□□ 0.42
COL27A1-207ENST00000494090 KLHDC8BQ8IXV7 354 aa17.68■□□□□ 0.42
COL27A1-207ENST00000494090 PAQR8Q8TEZ7 354 aa17.68■□□□□ 0.42
COL27A1-207ENST00000494090 RPS10P5Q9NQ39 176 aa17.68■□□□□ 0.42
COL27A1-207ENST00000494090 B3GAT1Q9P2W7 334 aa17.68■□□□□ 0.42
COL27A1-207ENST00000494090 CLEC2DQ9UHP7 191 aa17.68■□□□□ 0.42
COL27A1-207ENST00000494090 LAMB1P07942 1786 aa17.68■□□□□ 0.42
COL27A1-207ENST00000494090 A0A1B0GX78 115 aa17.68■□□□□ 0.42
COL27A1-207ENST00000494090 ANKRD34BA5PLL1 514 aa17.68■□□□□ 0.42
COL27A1-207ENST00000494090 ZNF587BE7ETH6 402 aa17.68■□□□□ 0.42
COL27A1-207ENST00000494090 AGPAT2O15120 278 aa17.68■□□□□ 0.42
COL27A1-207ENST00000494090 WNT11O96014 354 aa17.68■□□□□ 0.42
COL27A1-207ENST00000494090 CHATP28329 748 aa17.68■□□□□ 0.42
COL27A1-207ENST00000494090 C14orf28Q4W4Y0 310 aa17.68■□□□□ 0.42
COL27A1-207ENST00000494090 MED25Q71SY5 747 aa17.68■□□□□ 0.42
COL27A1-207ENST00000494090 TCTEX1D2Q8WW35 142 aa17.68■□□□□ 0.42
COL27A1-207ENST00000494090 TMEM106AQ96A25 262 aa17.68■□□□□ 0.42
COL27A1-207ENST00000494090 SLCO4A1Q96BD0 722 aa17.68■□□□□ 0.42
COL27A1-207ENST00000494090 UBQLN3Q9H347 655 aa17.68■□□□□ 0.42
COL27A1-207ENST00000494090 NDRG4Q9ULP0 352 aaKnown RBP17.68■□□□□ 0.42
COL27A1-207ENST00000494090 H7C1Q1 480 aa17.68■□□□□ 0.42
COL27A1-207ENST00000494090 CLDN12P56749 244 aa17.68■□□□□ 0.42
COL27A1-207ENST00000494090 HTD2P86397 168 aa17.68■□□□□ 0.42
COL27A1-207ENST00000494090 UBE2FQ969M7 185 aa17.68■□□□□ 0.42
COL27A1-207ENST00000494090 MDFIC2A0A1B0GVS7 189 aa17.68■□□□□ 0.42
COL27A1-207ENST00000494090 TSPAN11A1L157 253 aa17.68■□□□□ 0.42
COL27A1-207ENST00000494090 OR7C1O76099 320 aaPredicted RBP17.68■□□□□ 0.42
COL27A1-207ENST00000494090 MT-ATP6P00846 226 aa17.68■□□□□ 0.42
COL27A1-207ENST00000494090 TCRBP04435 133 aa17.68■□□□□ 0.42
COL27A1-207ENST00000494090 LRRC26Q2I0M4 334 aa17.68■□□□□ 0.42
COL27A1-207ENST00000494090 SLC35D3Q5M8T2 416 aa17.68■□□□□ 0.42
COL27A1-207ENST00000494090 TMEM64Q6YI46 380 aa17.68■□□□□ 0.42
COL27A1-207ENST00000494090 BIN3Q9NQY0 253 aa17.68■□□□□ 0.42
COL27A1-207ENST00000494090 OR14J1Q9UGF5 321 aa17.68■□□□□ 0.42
COL27A1-207ENST00000494090 ZBTB32Q9Y2Y4 487 aaPredicted RBP17.68■□□□□ 0.42
COL27A1-207ENST00000494090 MRPS2Q9Y399 296 aaKnown RBP17.68■□□□□ 0.42
COL27A1-207ENST00000494090 SLC22A23A1A5C7 686 aa17.67■□□□□ 0.42
COL27A1-207ENST00000494090 SSX4O60224 188 aa17.67■□□□□ 0.42
COL27A1-207ENST00000494090 EIF4E2O60573 245 aaKnown RBP17.67■□□□□ 0.42
COL27A1-207ENST00000494090 CLEC2LP0C7M8 214 aa17.67■□□□□ 0.42
COL27A1-207ENST00000494090 KITLGP21583 273 aa17.67■□□□□ 0.42
COL27A1-207ENST00000494090 SLC6A12P48065 614 aa17.67■□□□□ 0.42
COL27A1-207ENST00000494090 THBS3P49746 956 aa17.67■□□□□ 0.42
COL27A1-207ENST00000494090 RPS18P62269 152 aaKnown RBP17.67■□□□□ 0.42
COL27A1-207ENST00000494090 PGAP1Q75T13 922 aa17.67■□□□□ 0.42
COL27A1-207ENST00000494090 ZNF845Q96IR2 970 aaPredicted RBP17.67■□□□□ 0.42
COL27A1-207ENST00000494090 STACQ99469 402 aa17.67■□□□□ 0.42
COL27A1-207ENST00000494090 ACER3Q9NUN7 267 aa17.67■□□□□ 0.42
COL27A1-207ENST00000494090 A8MVM7 634 aa17.67■□□□□ 0.42
COL27A1-207ENST00000494090 H7C1C5 153 aa17.67■□□□□ 0.42
Retrieved 100 of 20,778 RNA–protein pairs in 28.3 ms