RNA–Protein interactions for RNA: ENST00000493341.1

VPS13A-212, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 2

Gene VPS13A, Length 2,001 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-212ENST00000493341 POM121L2Q96KW2 1035 aa3.66□□□□□ -1.82
VPS13A-212ENST00000493341 ATP6V1G3Q96LB4 118 aa3.66□□□□□ -1.82
VPS13A-212ENST00000493341 TMEM246Q9BRR3 403 aa3.66□□□□□ -1.82
VPS13A-212ENST00000493341 RNF126Q9BV68 326 aa3.66□□□□□ -1.82
VPS13A-212ENST00000493341 GAL3ST2Q9H3Q3 398 aa3.66□□□□□ -1.82
VPS13A-212ENST00000493341 RETNQ9HD89 108 aa3.66□□□□□ -1.82
VPS13A-212ENST00000493341 UBQLN1Q9UMX0 589 aaKnown RBP3.66□□□□□ -1.82
VPS13A-212ENST00000493341 CNTNAP1P78357 1384 aa3.66□□□□□ -1.82
VPS13A-212ENST00000493341 TOP2BQ02880 1626 aa3.66□□□□□ -1.82
VPS13A-212ENST00000493341 TMEM94Q12767 1356 aa3.66□□□□□ -1.82
VPS13A-212ENST00000493341 NEURL4Q96JN8 1562 aa3.66□□□□□ -1.82
VPS13A-212ENST00000493341 TRBV9A0A0B4J1U6 114 aa3.66□□□□□ -1.82
VPS13A-212ENST00000493341 PRR23D1E9PI22 279 aaPredicted RBP3.66□□□□□ -1.82
VPS13A-212ENST00000493341 RRP8O43159 456 aaKnown RBP3.66□□□□□ -1.82
VPS13A-212ENST00000493341 IFNW1P05000 195 aa3.66□□□□□ -1.82
VPS13A-212ENST00000493341 ALDOBP05062 364 aa3.66□□□□□ -1.82
VPS13A-212ENST00000493341 C2P06681 752 aa3.66□□□□□ -1.82
VPS13A-212ENST00000493341 PRR23D2P0DMB1 279 aaPredicted RBP3.66□□□□□ -1.82
VPS13A-212ENST00000493341 RGRP47804 291 aa3.66□□□□□ -1.82
VPS13A-212ENST00000493341 PSMD4P55036 377 aaKnown RBP3.66□□□□□ -1.82
VPS13A-212ENST00000493341 GPX6P59796 221 aa3.66□□□□□ -1.82
VPS13A-212ENST00000493341 LMO4P61968 165 aa3.66□□□□□ -1.82
VPS13A-212ENST00000493341 SLAQ13239 276 aa3.66□□□□□ -1.82
VPS13A-212ENST00000493341 FAM83EQ2M2I3 478 aa3.66□□□□□ -1.82
VPS13A-212ENST00000493341 TTC23LQ6PF05 361 aa3.66□□□□□ -1.82
VPS13A-212ENST00000493341 ZNF571Q7Z3V5 609 aaPredicted RBP3.66□□□□□ -1.82
VPS13A-212ENST00000493341 HIPK1Q86Z02 1210 aa3.66□□□□□ -1.82
VPS13A-212ENST00000493341 IQCKQ8N0W5 287 aa3.66□□□□□ -1.82
VPS13A-212ENST00000493341 LYPD6BQ8NI32 183 aa3.66□□□□□ -1.82
VPS13A-212ENST00000493341 ECHDC3Q96DC8 303 aa3.66□□□□□ -1.82
VPS13A-212ENST00000493341 MSANTD3Q96H12 275 aa3.66□□□□□ -1.82
VPS13A-212ENST00000493341 ADAP2Q9NPF8 381 aa3.66□□□□□ -1.82
VPS13A-212ENST00000493341 IFNKQ9P0W0 207 aa3.66□□□□□ -1.82
VPS13A-212ENST00000493341 DDX19BQ9UMR2 479 aa3.66□□□□□ -1.82
VPS13A-212ENST00000493341 SLC17A4Q9Y2C5 497 aa3.66□□□□□ -1.82
VPS13A-212ENST00000493341 ABCA10Q8WWZ4 1543 aa3.65□□□□□ -1.82
VPS13A-212ENST00000493341 TMEM120BA0PK00 339 aa3.65□□□□□ -1.82
VPS13A-212ENST00000493341 EPM2AB3EWF7 344 aa3.65□□□□□ -1.82
VPS13A-212ENST00000493341 E9PQ18 207 aa3.65□□□□□ -1.82
VPS13A-212ENST00000493341 NMT2O60551 498 aa3.65□□□□□ -1.82
VPS13A-212ENST00000493341 ZNF253O75346 499 aa3.65□□□□□ -1.82
VPS13A-212ENST00000493341 SNAI1O95863 264 aaPredicted RBP3.65□□□□□ -1.82
VPS13A-212ENST00000493341 IGHV2-5P01817 119 aa3.65□□□□□ -1.82
VPS13A-212ENST00000493341 KIR2DS2P43631 304 aa3.65□□□□□ -1.82
VPS13A-212ENST00000493341 UBE2MP61081 183 aaKnown RBP3.65□□□□□ -1.82
VPS13A-212ENST00000493341 CYTH1Q15438 398 aa3.65□□□□□ -1.82
VPS13A-212ENST00000493341 TGIF1Q15583 401 aa3.65□□□□□ -1.82
VPS13A-212ENST00000493341 QRICH1Q2TAL8 776 aa3.65□□□□□ -1.82
VPS13A-212ENST00000493341 C6orf183Q5T699 404 aa3.65□□□□□ -1.82
VPS13A-212ENST00000493341 TIGD3Q6B0B8 471 aa3.65□□□□□ -1.82
VPS13A-212ENST00000493341 ANKRD26P1Q6NSI1 321 aa3.65□□□□□ -1.82
VPS13A-212ENST00000493341 GDPD3Q7L5L3 318 aa3.65□□□□□ -1.82
VPS13A-212ENST00000493341 CSNK1G2-AS1Q8NCQ2 148 aa3.65□□□□□ -1.82
VPS13A-212ENST00000493341 OR51L1Q8NGJ5 315 aa3.65□□□□□ -1.82
VPS13A-212ENST00000493341 OR52E5Q8NH55 327 aa3.65□□□□□ -1.82
VPS13A-212ENST00000493341 JSRP1Q96MG2 331 aaPredicted RBP3.65□□□□□ -1.82
VPS13A-212ENST00000493341 OR5M11Q96RB7 305 aa3.65□□□□□ -1.82
VPS13A-212ENST00000493341 SH3GL1Q99961 368 aa3.65□□□□□ -1.82
VPS13A-212ENST00000493341 UCK2Q9BZX2 261 aa3.65□□□□□ -1.82
VPS13A-212ENST00000493341 TMEM165Q9HC07 324 aa3.65□□□□□ -1.82
VPS13A-212ENST00000493341 ZC4H2Q9NQZ6 224 aa3.65□□□□□ -1.82
VPS13A-212ENST00000493341 TREM2Q9NZC2 230 aa3.65□□□□□ -1.82
VPS13A-212ENST00000493341 KCNIP1Q9NZI2 227 aa3.65□□□□□ -1.82
VPS13A-212ENST00000493341 V9GY05 133 aa3.65□□□□□ -1.82
VPS13A-212ENST00000493341 UBN2Q6ZU65 1347 aa3.65□□□□□ -1.83
VPS13A-212ENST00000493341 SH3TC1Q8TE82 1336 aa3.65□□□□□ -1.83
VPS13A-212ENST00000493341 MAGI1Q96QZ7 1491 aaPredicted RBP3.65□□□□□ -1.83
VPS13A-212ENST00000493341 PRR23AA6NEV1 266 aa3.65□□□□□ -1.83
VPS13A-212ENST00000493341 YKT6O15498 198 aa3.65□□□□□ -1.83
VPS13A-212ENST00000493341 KBTBD11O94819 623 aa3.65□□□□□ -1.83
VPS13A-212ENST00000493341 FASP25445 335 aa3.65□□□□□ -1.83
VPS13A-212ENST00000493341 CD82P27701 267 aa3.65□□□□□ -1.83
VPS13A-212ENST00000493341 FOXN2P32314 431 aa3.65□□□□□ -1.83
VPS13A-212ENST00000493341 CRISP1P54107 249 aa3.65□□□□□ -1.83
VPS13A-212ENST00000493341 ASAH1Q13510 395 aa3.65□□□□□ -1.83
VPS13A-212ENST00000493341 RUNX3Q13761 415 aa3.65□□□□□ -1.83
VPS13A-212ENST00000493341 FAM182AQ5T1J6 154 aa3.65□□□□□ -1.83
VPS13A-212ENST00000493341 STUMQ69YW2 141 aa3.65□□□□□ -1.83
VPS13A-212ENST00000493341 ZNF600Q6ZNG1 722 aa3.65□□□□□ -1.83
VPS13A-212ENST00000493341 STXBP4Q6ZWJ1 553 aa3.65□□□□□ -1.83
VPS13A-212ENST00000493341 USP43Q70EL4 1123 aa3.65□□□□□ -1.83
VPS13A-212ENST00000493341 FRA10AC1Q70Z53 315 aa3.65□□□□□ -1.83
VPS13A-212ENST00000493341 NAXDQ8IW45 347 aa3.65□□□□□ -1.83
VPS13A-212ENST00000493341 PUSL1Q8N0Z8 303 aaKnown RBP3.65□□□□□ -1.83
VPS13A-212ENST00000493341 JAGN1Q8N5M9 183 aa3.65□□□□□ -1.83
VPS13A-212ENST00000493341 ZNF502Q8TBZ5 544 aa3.65□□□□□ -1.83
VPS13A-212ENST00000493341 CXorf40AQ8TE69 158 aa3.65□□□□□ -1.83
VPS13A-212ENST00000493341 ASZ1Q8WWH4 475 aa3.65□□□□□ -1.83
VPS13A-212ENST00000493341 MYDGFQ969H8 173 aa3.65□□□□□ -1.83
VPS13A-212ENST00000493341 OPRPNQ99935 248 aaPredicted RBP3.65□□□□□ -1.83
VPS13A-212ENST00000493341 SLC7A5P2Q9GIP4 190 aa3.65□□□□□ -1.83
VPS13A-212ENST00000493341 GBA3Q9H227 469 aa3.65□□□□□ -1.83
VPS13A-212ENST00000493341 DPM3Q9P2X0 92 aa3.65□□□□□ -1.83
VPS13A-212ENST00000493341 FLVCR2Q9UPI3 526 aa3.65□□□□□ -1.83
VPS13A-212ENST00000493341 PCSK5Q92824 1860 aa3.64□□□□□ -1.83
VPS13A-212ENST00000493341 CLASP1Q7Z460 1538 aa3.64□□□□□ -1.83
VPS13A-212ENST00000493341 RIMBP3CA6NJZ7 1639 aa3.64□□□□□ -1.83
VPS13A-212ENST00000493341 RIMBP3BA6NNM3 1639 aa3.64□□□□□ -1.83
VPS13A-212ENST00000493341 RIMBP3Q9UFD9 1639 aa3.64□□□□□ -1.83
VPS13A-212ENST00000493341 A0A0G2JRQ6 117 aa3.64□□□□□ -1.83
Retrieved 100 of 20,778 RNA–protein pairs in 82.7 ms