RNA–Protein interactions for RNA: ENST00000487938.5

VIM-206, Transcript of vimentin, humanhuman

TSL 5

Gene VIM, Length 2,272 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-206ENST00000487938 FAM160A2Q8N612 972 aaPredicted RBP16.33■□□□□ 0.2
VIM-206ENST00000487938 DEFB119Q8N690 84 aa16.33■□□□□ 0.2
VIM-206ENST00000487938 ZNF680Q8NEM1 530 aa16.33■□□□□ 0.2
VIM-206ENST00000487938 CEP76Q8TAP6 659 aa16.33■□□□□ 0.2
VIM-206ENST00000487938 FCAMRQ8WWV6 532 aa16.33■□□□□ 0.2
VIM-206ENST00000487938 RLN3Q8WXF3 142 aa16.33■□□□□ 0.2
VIM-206ENST00000487938 TCTN2Q96GX1 697 aa16.33■□□□□ 0.2
VIM-206ENST00000487938 DPCDQ9BVM2 203 aaPredicted RBP16.33■□□□□ 0.2
VIM-206ENST00000487938 UBQLN4Q9NRR5 601 aa16.33■□□□□ 0.2
VIM-206ENST00000487938 EIF3KQ9UBQ5 218 aaKnown RBP16.33■□□□□ 0.2
VIM-206ENST00000487938 GRHPRQ9UBQ7 328 aa16.33■□□□□ 0.2
VIM-206ENST00000487938 IKZF2Q9UKS7 526 aa16.33■□□□□ 0.2
VIM-206ENST00000487938 ELF5Q9UKW6 265 aaPredicted RBP16.33■□□□□ 0.2
VIM-206ENST00000487938 COL4A2P08572 1712 aa16.33■□□□□ 0.2
VIM-206ENST00000487938 C17orf51A8MQB3 221 aa16.32■□□□□ 0.2
VIM-206ENST00000487938 LEUTXA8MZ59 168 aa16.32■□□□□ 0.2
VIM-206ENST00000487938 SCDO00767 359 aa16.32■□□□□ 0.2
VIM-206ENST00000487938 KRT33AO76009 404 aa16.32■□□□□ 0.2
VIM-206ENST00000487938 RAF1P04049 648 aa16.32■□□□□ 0.2
VIM-206ENST00000487938 MAS1P04201 325 aa16.32■□□□□ 0.2
VIM-206ENST00000487938 TMIGD3P0DMS9 266 aaPredicted RBP16.32■□□□□ 0.2
VIM-206ENST00000487938 PNMTP11086 282 aa16.32■□□□□ 0.2
VIM-206ENST00000487938 PSMB1P20618 241 aaKnown RBP16.32■□□□□ 0.2
VIM-206ENST00000487938 CDK2P24941 298 aa16.32■□□□□ 0.2
VIM-206ENST00000487938 SDHAP31040 664 aa16.32■□□□□ 0.2
VIM-206ENST00000487938 RPL18Q07020 188 aaKnown RBP16.32■□□□□ 0.2
VIM-206ENST00000487938 TMEM69Q5SWH9 247 aa16.32■□□□□ 0.2
VIM-206ENST00000487938 FNDC7Q5VTL7 733 aa16.32■□□□□ 0.2
VIM-206ENST00000487938 ZNF440Q8IYI8 595 aa16.32■□□□□ 0.2
VIM-206ENST00000487938 OR6V1Q8N148 313 aa16.32■□□□□ 0.2
VIM-206ENST00000487938 FAM109AQ8N4B1 249 aa16.32■□□□□ 0.2
VIM-206ENST00000487938 ZNF563Q8TA94 476 aa16.32■□□□□ 0.2
VIM-206ENST00000487938 RELTQ969Z4 430 aa16.32■□□□□ 0.2
VIM-206ENST00000487938 KLHDC7BQ96G42 594 aa16.32■□□□□ 0.2
VIM-206ENST00000487938 NXF5Q9H1B4 397 aaKnown RBP16.32■□□□□ 0.2
VIM-206ENST00000487938 METTL17Q9H7H0 456 aaPredicted RBP16.32■□□□□ 0.2
VIM-206ENST00000487938 HEXA-AS1Q9H8Q6 139 aa16.32■□□□□ 0.2
VIM-206ENST00000487938 WDR76Q9H967 626 aa16.32■□□□□ 0.2
VIM-206ENST00000487938 SOHLH2Q9NX45 425 aa16.32■□□□□ 0.2
VIM-206ENST00000487938 ING1Q9UK53 422 aaPredicted RBP16.32■□□□□ 0.2
VIM-206ENST00000487938 CEP290O15078 2479 aa16.32■□□□□ 0.2
VIM-206ENST00000487938 KHNYNO15037 678 aaKnown RBP16.31■□□□□ 0.2
VIM-206ENST00000487938 ARPC1BO15143 372 aaKnown RBP16.31■□□□□ 0.2
VIM-206ENST00000487938 ZNF749O43361 778 aa16.31■□□□□ 0.2
VIM-206ENST00000487938 SLC22A5O76082 557 aa16.31■□□□□ 0.2
VIM-206ENST00000487938 UTS2O95399 124 aa16.31■□□□□ 0.2
VIM-206ENST00000487938 TPOP07202 933 aa16.31■□□□□ 0.2
VIM-206ENST00000487938 HSD17B7P56937 341 aa16.31■□□□□ 0.2
VIM-206ENST00000487938 PLA2G7Q13093 441 aa16.31■□□□□ 0.2
VIM-206ENST00000487938 Q499Y3 187 aa16.31■□□□□ 0.2
VIM-206ENST00000487938 SLC6A19Q695T7 634 aa16.31■□□□□ 0.2
VIM-206ENST00000487938 Q6ZS52 159 aa16.31■□□□□ 0.2
VIM-206ENST00000487938 FGD2Q7Z6J4 655 aa16.31■□□□□ 0.2
VIM-206ENST00000487938 FAM71CQ8NEG0 241 aa16.31■□□□□ 0.2
VIM-206ENST00000487938 OR8K3Q8NH51 312 aa16.31■□□□□ 0.2
VIM-206ENST00000487938 PTPMT1Q8WUK0 201 aaPredicted RBP16.31■□□□□ 0.2
VIM-206ENST00000487938 PCNPQ8WW12 178 aaKnown RBP16.31■□□□□ 0.2
VIM-206ENST00000487938 TAAR8Q969N4 342 aa16.31■□□□□ 0.2
VIM-206ENST00000487938 TGM7Q96PF1 710 aa16.31■□□□□ 0.2
VIM-206ENST00000487938 ULBP3Q9BZM4 244 aa16.31■□□□□ 0.2
VIM-206ENST00000487938 CHIAQ9BZP6 476 aa16.31■□□□□ 0.2
VIM-206ENST00000487938 PLEKHA1Q9HB21 404 aa16.31■□□□□ 0.2
VIM-206ENST00000487938 B3GNT2Q9NY97 397 aa16.31■□□□□ 0.2
VIM-206ENST00000487938 PRODH2Q9UF12 536 aa16.31■□□□□ 0.2
VIM-206ENST00000487938 LAMP5Q9UJQ1 280 aa16.31■□□□□ 0.2
VIM-206ENST00000487938 GMEB2Q9UKD1 530 aa16.31■□□□□ 0.2
VIM-206ENST00000487938 FKBP7Q9Y680 259 aa16.31■□□□□ 0.2
VIM-206ENST00000487938 CHURC1-FNTBB4DL54 471 aa16.31■□□□□ 0.2
VIM-206ENST00000487938 ZNF264O43296 627 aa16.31■□□□□ 0.2
VIM-206ENST00000487938 PROS1P07225 676 aa16.31■□□□□ 0.2
VIM-206ENST00000487938 ASAH2BP0C7U1 165 aa16.31■□□□□ 0.2
VIM-206ENST00000487938 CD1CP29017 333 aa16.31■□□□□ 0.2
VIM-206ENST00000487938 TACR3P29371 465 aa16.31■□□□□ 0.2
VIM-206ENST00000487938 FNTBP49356 437 aa16.31■□□□□ 0.2
VIM-206ENST00000487938 ZNF81P51508 661 aa16.31■□□□□ 0.2
VIM-206ENST00000487938 P2RX1P51575 399 aa16.31■□□□□ 0.2
VIM-206ENST00000487938 SLC25A1P53007 311 aa16.31■□□□□ 0.2
VIM-206ENST00000487938 GFERP55789 205 aa16.31■□□□□ 0.2
VIM-206ENST00000487938 MESTQ5EB52 335 aa16.31■□□□□ 0.2
VIM-206ENST00000487938 FAM69AQ5T7M9 428 aa16.31■□□□□ 0.2
VIM-206ENST00000487938 NLRC3Q7RTR2 1065 aa16.31■□□□□ 0.2
VIM-206ENST00000487938 DPY19L4Q7Z388 723 aa16.31■□□□□ 0.2
VIM-206ENST00000487938 OR6N2Q8NGY6 317 aa16.31■□□□□ 0.2
VIM-206ENST00000487938 OR10AC1Q8NH08 325 aa16.31■□□□□ 0.2
VIM-206ENST00000487938 THEM6Q8WUY1 208 aa16.31■□□□□ 0.2
VIM-206ENST00000487938 ZNF578Q96N58 590 aaPredicted RBP16.31■□□□□ 0.2
VIM-206ENST00000487938 TSPAN32Q96QS1 320 aa16.31■□□□□ 0.2
VIM-206ENST00000487938 ADOQ96SZ5 270 aa16.31■□□□□ 0.2
VIM-206ENST00000487938 RTN4RQ9BZR6 473 aa16.31■□□□□ 0.2
VIM-206ENST00000487938 ZNF436Q9C0F3 470 aaPredicted RBP16.31■□□□□ 0.2
VIM-206ENST00000487938 OR8D2Q9GZM6 311 aa16.31■□□□□ 0.2
VIM-206ENST00000487938 IGHV5-51A0A0C4DH38 117 aa16.3■□□□□ 0.2
VIM-206ENST00000487938 MEN1O00255 615 aa16.3■□□□□ 0.2
VIM-206ENST00000487938 AKR7A3O95154 331 aa16.3■□□□□ 0.2
VIM-206ENST00000487938 ECDO95905 644 aaPredicted RBP16.3■□□□□ 0.2
VIM-206ENST00000487938 RAD52P43351 418 aa16.3■□□□□ 0.2
VIM-206ENST00000487938 CDC20BQ86Y33 519 aa16.3■□□□□ 0.2
VIM-206ENST00000487938 OR51A4Q8NGJ6 313 aa16.3■□□□□ 0.2
VIM-206ENST00000487938 OR2T35Q8NGX2 323 aa16.3■□□□□ 0.2
VIM-206ENST00000487938 OR2T4Q8NH00 348 aa16.3■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 33.2 ms