RNA–Protein interactions for RNA: ENST00000486618.1

HDAC3-209, Transcript of histone deacetylase 3, humanhuman

TSL 3

Gene HDAC3, Length 711 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3-209ENST00000486618 IFNA2P01563 188 aa6.1□□□□□ -1.43
HDAC3-209ENST00000486618 MT-ND2P03891 347 aa6.1□□□□□ -1.43
HDAC3-209ENST00000486618 LCATP04180 440 aa6.1□□□□□ -1.43
HDAC3-209ENST00000486618 SBK2P0C263 348 aa6.1□□□□□ -1.43
HDAC3-209ENST00000486618 CTXN2P0C2S0 81 aa6.1□□□□□ -1.43
HDAC3-209ENST00000486618 SMIM10L1P0DMW3 83 aa6.1□□□□□ -1.43
HDAC3-209ENST00000486618 CCL3P10147 92 aa6.1□□□□□ -1.43
HDAC3-209ENST00000486618 FPR1P21462 350 aa6.1□□□□□ -1.43
HDAC3-209ENST00000486618 IL12BP29460 328 aa6.1□□□□□ -1.43
HDAC3-209ENST00000486618 RPL22P35268 128 aaKnown RBP6.1□□□□□ -1.43
HDAC3-209ENST00000486618 SLC1A2P43004 574 aa6.1□□□□□ -1.43
HDAC3-209ENST00000486618 MAGEA2P43356 314 aa6.1□□□□□ -1.43
HDAC3-209ENST00000486618 SLC6A12P48065 614 aa6.1□□□□□ -1.43
HDAC3-209ENST00000486618 KCNJ3P48549 501 aa6.1□□□□□ -1.43
HDAC3-209ENST00000486618 PNLIPRP2P54317 469 aa6.1□□□□□ -1.43
HDAC3-209ENST00000486618 AP1S2P56377 157 aa6.1□□□□□ -1.43
HDAC3-209ENST00000486618 RAB38P57729 211 aa6.1□□□□□ -1.43
HDAC3-209ENST00000486618 UBE2G2P60604 165 aa6.1□□□□□ -1.43
HDAC3-209ENST00000486618 STXBP1P61764 594 aaKnown RBP6.1□□□□□ -1.43
HDAC3-209ENST00000486618 RAB11AP62491 216 aa6.1□□□□□ -1.43
HDAC3-209ENST00000486618 VSNL1P62760 191 aa6.1□□□□□ -1.43
HDAC3-209ENST00000486618 BTN3A2P78410 334 aa6.1□□□□□ -1.43
HDAC3-209ENST00000486618 CCZ1BP86790 482 aa6.1□□□□□ -1.43
HDAC3-209ENST00000486618 CCZ1P86791 482 aaPredicted RBP6.1□□□□□ -1.43
HDAC3-209ENST00000486618 CTBP1Q13363 440 aa6.1□□□□□ -1.43
HDAC3-209ENST00000486618 PDE7AQ13946 482 aa6.1□□□□□ -1.43
HDAC3-209ENST00000486618 RAB11BQ15907 218 aa6.1□□□□□ -1.43
HDAC3-209ENST00000486618 PCK2Q16822 640 aa6.1□□□□□ -1.43
HDAC3-209ENST00000486618 ACSF3Q4G176 576 aaPredicted RBP6.1□□□□□ -1.43
HDAC3-209ENST00000486618 LIPNQ5VXI9 398 aa6.1□□□□□ -1.43
HDAC3-209ENST00000486618 NSUN5P2Q63ZY6 315 aa6.1□□□□□ -1.43
HDAC3-209ENST00000486618 BICRALQ6AI39 1079 aa6.1□□□□□ -1.43
HDAC3-209ENST00000486618 DGAT2L7PQ6IED9 249 aa6.1□□□□□ -1.43
HDAC3-209ENST00000486618 TMEM88Q6PEY1 159 aa6.1□□□□□ -1.43
HDAC3-209ENST00000486618 PAQR3Q6TCH7 311 aa6.1□□□□□ -1.43
HDAC3-209ENST00000486618 YTHDF3Q7Z739 585 aaKnown RBP6.1□□□□□ -1.43
HDAC3-209ENST00000486618 PRUNE1Q86TP1 453 aa6.1□□□□□ -1.43
HDAC3-209ENST00000486618 RBM45Q8IUH3 476 aaKnown RBP6.1□□□□□ -1.43
HDAC3-209ENST00000486618 UBQLNLQ8IYU4 475 aa6.1□□□□□ -1.43
HDAC3-209ENST00000486618 DND1Q8IYX4 353 aaKnown RBP6.1□□□□□ -1.43
HDAC3-209ENST00000486618 CIARTQ8N365 385 aaPredicted RBP6.1□□□□□ -1.43
HDAC3-209ENST00000486618 LRRC25Q8N386 305 aaPredicted RBP6.1□□□□□ -1.43
HDAC3-209ENST00000486618 LRRC57Q8N9N7 239 aa6.1□□□□□ -1.43
HDAC3-209ENST00000486618 OR5M1Q8NGP8 315 aa6.1□□□□□ -1.43
HDAC3-209ENST00000486618 OR13C9Q8NGT0 318 aa6.1□□□□□ -1.43
HDAC3-209ENST00000486618 OR52N1Q8NH53 320 aa6.1□□□□□ -1.43
HDAC3-209ENST00000486618 OR56A3Q8NH54 315 aa6.1□□□□□ -1.43
HDAC3-209ENST00000486618 CD200R1Q8TD46 325 aa6.1□□□□□ -1.43
HDAC3-209ENST00000486618 ADIPOR1Q96A54 375 aa6.1□□□□□ -1.43
HDAC3-209ENST00000486618 RRNAD1Q96FB5 475 aaKnown RBP6.1□□□□□ -1.43
HDAC3-209ENST00000486618 SMIM10Q96HG1 83 aa6.1□□□□□ -1.43
HDAC3-209ENST00000486618 CAPZA3Q96KX2 299 aa6.1□□□□□ -1.43
HDAC3-209ENST00000486618 VRK1Q99986 396 aaPredicted RBP6.1□□□□□ -1.43
HDAC3-209ENST00000486618 FAM110AQ9BQ89 295 aa6.1□□□□□ -1.43
HDAC3-209ENST00000486618 OR8D2Q9GZM6 311 aa6.1□□□□□ -1.43
HDAC3-209ENST00000486618 RACGAP1Q9H0H5 632 aa6.1□□□□□ -1.43
HDAC3-209ENST00000486618 RANBP3Q9H6Z4 567 aaPredicted RBP6.1□□□□□ -1.43
HDAC3-209ENST00000486618 ZNF703Q9H7S9 590 aaPredicted RBP6.1□□□□□ -1.43
HDAC3-209ENST00000486618 GEMIN7Q9H840 131 aaKnown RBP6.1□□□□□ -1.43
HDAC3-209ENST00000486618 MED20Q9H944 212 aa6.1□□□□□ -1.43
HDAC3-209ENST00000486618 PELI2Q9HAT8 420 aa6.1□□□□□ -1.43
HDAC3-209ENST00000486618 ABCB10Q9NRK6 738 aa6.1□□□□□ -1.43
HDAC3-209ENST00000486618 SLC6A13Q9NSD5 602 aa6.1□□□□□ -1.43
HDAC3-209ENST00000486618 MS4A12Q9NXJ0 267 aa6.1□□□□□ -1.43
HDAC3-209ENST00000486618 ARL15Q9NXU5 204 aa6.1□□□□□ -1.43
HDAC3-209ENST00000486618 HAO2Q9NYQ3 351 aa6.1□□□□□ -1.43
HDAC3-209ENST00000486618 PLEK2Q9NYT0 353 aa6.1□□□□□ -1.43
HDAC3-209ENST00000486618 COPS7AQ9UBW8 275 aa6.1□□□□□ -1.43
HDAC3-209ENST00000486618 NDRG3Q9UGV2 375 aa6.1□□□□□ -1.43
HDAC3-209ENST00000486618 ADAM21Q9UKJ8 722 aa6.1□□□□□ -1.43
HDAC3-209ENST00000486618 REXO2Q9Y3B8 237 aaKnown RBP6.1□□□□□ -1.43
HDAC3-209ENST00000486618 RHBDD3Q9Y3P4 386 aa6.1□□□□□ -1.43
HDAC3-209ENST00000486618 ABCA1O95477 2261 aa6.1□□□□□ -1.43
HDAC3-209ENST00000486618 KIAA1549Q9HCM3 1950 aa6.09□□□□□ -1.43
HDAC3-209ENST00000486618 NCKAP5O14513 1909 aa6.09□□□□□ -1.43
HDAC3-209ENST00000486618 USF3Q68DE3 2245 aa6.09□□□□□ -1.43
HDAC3-209ENST00000486618 MBD3L4A6NDZ8 208 aaPredicted RBP6.09□□□□□ -1.43
HDAC3-209ENST00000486618 MBD3L3A6NE82 208 aaPredicted RBP6.09□□□□□ -1.43
HDAC3-209ENST00000486618 CCNT2O60583 730 aaKnown RBP6.09□□□□□ -1.43
HDAC3-209ENST00000486618 CTNSO60931 367 aa6.09□□□□□ -1.43
HDAC3-209ENST00000486618 ERN1O75460 977 aaKnown RBP6.09□□□□□ -1.43
HDAC3-209ENST00000486618 LY86O95711 162 aa6.09□□□□□ -1.43
HDAC3-209ENST00000486618 OXSR1O95747 527 aaPredicted RBP6.09□□□□□ -1.43
HDAC3-209ENST00000486618 ANXA4P09525 319 aaPredicted RBP6.09□□□□□ -1.43
HDAC3-209ENST00000486618 CBR1P16152 277 aa6.09□□□□□ -1.43
HDAC3-209ENST00000486618 TPSB2P20231 275 aa6.09□□□□□ -1.43
HDAC3-209ENST00000486618 HNF1AP20823 631 aa6.09□□□□□ -1.43
HDAC3-209ENST00000486618 PPP2R1BP30154 601 aa6.09□□□□□ -1.43
HDAC3-209ENST00000486618 CD80P33681 288 aa6.09□□□□□ -1.43
HDAC3-209ENST00000486618 CHI3L1P36222 383 aaPredicted RBP6.09□□□□□ -1.43
HDAC3-209ENST00000486618 PIGAP37287 484 aa6.09□□□□□ -1.43
HDAC3-209ENST00000486618 RPL21P46778 160 aaKnown RBP6.09□□□□□ -1.43
HDAC3-209ENST00000486618 CDK9P50750 372 aaKnown RBP6.09□□□□□ -1.43
HDAC3-209ENST00000486618 ZNF136P52737 540 aa6.09□□□□□ -1.43
HDAC3-209ENST00000486618 TIRAPP58753 221 aa6.09□□□□□ -1.43
HDAC3-209ENST00000486618 C2orf54Q08AI8 447 aa6.09□□□□□ -1.43
HDAC3-209ENST00000486618 STX4Q12846 297 aa6.09□□□□□ -1.43
HDAC3-209ENST00000486618 PPP1R8Q12972 351 aaKnown RBP6.09□□□□□ -1.43
HDAC3-209ENST00000486618 DUSP8Q13202 625 aa6.09□□□□□ -1.43
HDAC3-209ENST00000486618 RUNX2Q13950 521 aa6.09□□□□□ -1.43
Retrieved 100 of 20,778 RNA–protein pairs in 25.4 ms